data_3R2A # _model_server_result.job_id 485wFxJSLii_Xr3jVShxzw _model_server_result.datetime_utc '2024-11-15 13:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3R2A # _exptl.entry_id 3R2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4,5-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R2A _cell.length_a 85.03 _cell.length_b 117.58 _cell.length_c 117.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C15 H8 O6' _chem_comp.formula_weight 284.22 _chem_comp.id RHN _chem_comp.mon_nstd_flag . _chem_comp.name '4,5-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Rhein;Rhubarb Yellow' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAL RHN doub 277 n n CAP OAB RHN doub 278 n n OAC CAQ RHN doub 279 n n CAL OAD RHN sing 280 n n OAD HOAD RHN sing 281 n n OAE CAN RHN sing 282 n n OAE HOAE RHN sing 283 n n OAF CAO RHN sing 284 n n OAF HOAF RHN sing 285 n n CAH CAG RHN doub 286 n y CAG CAI RHN sing 287 n y CAG HAG RHN sing 288 n n CAN CAH RHN sing 289 n y CAH HAH RHN sing 290 n n CAR CAI RHN doub 291 n y CAI HAI RHN sing 292 n n CAO CAJ RHN doub 293 n y CAJ CAM RHN sing 294 n y CAJ HAJ RHN sing 295 n n CAS CAK RHN sing 296 n y CAM CAK RHN doub 297 n y CAK HAK RHN sing 298 n n CAM CAL RHN sing 299 n n CAN CAT RHN doub 300 n y CAO CAU RHN sing 301 n y CAR CAP RHN sing 302 n n CAS CAP RHN sing 303 n n CAQ CAT RHN sing 304 n n CAQ CAU RHN sing 305 n n CAT CAR RHN sing 306 n y CAU CAS RHN doub 307 n y # _atom_sites.entry_id 3R2A _atom_sites.fract_transf_matrix[1][1] 0.011761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 RHN A 1 1 1 RHN RHN . H 3 RHN C 1 2 2 RHN RHN . I 4 HOH A 1 2 2 HOH HOH . I 4 HOH A 2 8 8 HOH HOH . I 4 HOH A 3 10 10 HOH HOH . I 4 HOH A 4 16 16 HOH HOH . I 4 HOH A 5 19 19 HOH HOH . I 4 HOH A 6 21 21 HOH HOH . I 4 HOH A 7 24 24 HOH HOH . I 4 HOH A 8 25 25 HOH HOH . I 4 HOH A 9 37 37 HOH HOH . I 4 HOH A 10 38 38 HOH HOH . I 4 HOH A 11 40 40 HOH HOH . I 4 HOH A 12 41 41 HOH HOH . I 4 HOH A 13 48 48 HOH HOH . I 4 HOH A 14 49 49 HOH HOH . I 4 HOH A 15 51 51 HOH HOH . I 4 HOH A 16 58 58 HOH HOH . I 4 HOH A 17 59 59 HOH HOH . J 4 HOH B 1 1 1 HOH HOH . J 4 HOH B 2 5 5 HOH HOH . J 4 HOH B 3 14 14 HOH HOH . J 4 HOH B 4 17 17 HOH HOH . J 4 HOH B 5 22 22 HOH HOH . J 4 HOH B 6 23 23 HOH HOH . J 4 HOH B 7 26 26 HOH HOH . J 4 HOH B 8 31 31 HOH HOH . J 4 HOH B 9 34 34 HOH HOH . J 4 HOH B 10 35 35 HOH HOH . J 4 HOH B 11 42 42 HOH HOH . J 4 HOH B 12 45 45 HOH HOH . J 4 HOH B 13 50 50 HOH HOH . J 4 HOH B 14 54 54 HOH HOH . J 4 HOH B 15 57 57 HOH HOH . K 4 HOH C 1 3 3 HOH HOH . K 4 HOH C 2 15 15 HOH HOH . K 4 HOH C 3 20 20 HOH HOH . K 4 HOH C 4 27 27 HOH HOH . K 4 HOH C 5 28 28 HOH HOH . K 4 HOH C 6 32 32 HOH HOH . K 4 HOH C 7 33 33 HOH HOH . K 4 HOH C 8 36 36 HOH HOH . K 4 HOH C 9 39 39 HOH HOH . K 4 HOH C 10 43 43 HOH HOH . K 4 HOH C 11 44 44 HOH HOH . K 4 HOH C 12 52 52 HOH HOH . K 4 HOH C 13 60 60 HOH HOH . L 4 HOH D 1 4 4 HOH HOH . L 4 HOH D 2 6 6 HOH HOH . L 4 HOH D 3 9 9 HOH HOH . L 4 HOH D 4 11 11 HOH HOH . L 4 HOH D 5 12 12 HOH HOH . L 4 HOH D 6 13 13 HOH HOH . L 4 HOH D 7 18 18 HOH HOH . L 4 HOH D 8 29 29 HOH HOH . L 4 HOH D 9 30 30 HOH HOH . L 4 HOH D 10 53 53 HOH HOH . L 4 HOH D 11 55 55 HOH HOH . L 4 HOH D 12 56 56 HOH HOH . M 4 HOH E 1 7 7 HOH HOH . M 4 HOH E 2 47 47 HOH HOH . N 4 HOH F 1 46 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA RHN . . . G 3 -47.365 -14.769 1.627 1 129.44 ? OAA RHN 1 A 1 HETATM 2 O OAB RHN . . . G 3 -49.686 -9.302 1.471 1 129.65 ? OAB RHN 1 A 1 HETATM 3 O OAC RHN . . . G 3 -52.048 -11.787 -2.535 1 129.63 ? OAC RHN 1 A 1 HETATM 4 O OAD RHN . . . G 3 -48.602 -14.065 3.254 1 129.38 ? OAD RHN 1 A 1 HETATM 5 O OAE RHN . . . G 3 -53.021 -9.776 -3.339 1 129.59 ? OAE RHN 1 A 1 HETATM 6 O OAF RHN . . . G 3 -51.145 -13.926 -1.866 1 129.64 ? OAF RHN 1 A 1 HETATM 7 C CAG RHN . . . G 3 -51.981 -7.061 -1.118 1 129.56 ? CAG RHN 1 A 1 HETATM 8 C CAH RHN . . . G 3 -52.603 -7.715 -2.177 1 129.61 ? CAH RHN 1 A 1 HETATM 9 C CAI RHN . . . G 3 -51.197 -7.789 -0.224 1 129.58 ? CAI RHN 1 A 1 HETATM 10 C CAJ RHN . . . G 3 -49.743 -14.035 0.074 1 129.61 ? CAJ RHN 1 A 1 HETATM 11 C CAK RHN . . . G 3 -49.292 -11.997 1.27 1 129.63 ? CAK RHN 1 A 1 HETATM 12 C CAL RHN . . . G 3 -48.336 -14.092 2.033 1 129.57 ? CAL RHN 1 A 1 HETATM 13 C CAM RHN . . . G 3 -49.121 -13.376 1.129 1 129.57 ? CAM RHN 1 A 1 HETATM 14 C CAN RHN . . . G 3 -52.434 -9.09 -2.324 1 129.64 ? CAN RHN 1 A 1 HETATM 15 C CAO RHN . . . G 3 -50.525 -13.311 -0.823 1 129.6 ? CAO RHN 1 A 1 HETATM 16 C CAP RHN . . . G 3 -50.237 -9.885 0.535 1 129.67 ? CAP RHN 1 A 1 HETATM 17 C CAQ RHN . . . G 3 -51.494 -11.211 -1.596 1 129.61 ? CAQ RHN 1 A 1 HETATM 18 C CAR RHN . . . G 3 -51.026 -9.169 -0.371 1 129.64 ? CAR RHN 1 A 1 HETATM 19 C CAS RHN . . . G 3 -50.08 -11.267 0.371 1 129.63 ? CAS RHN 1 A 1 HETATM 20 C CAT RHN . . . G 3 -51.652 -9.831 -1.433 1 129.64 ? CAT RHN 1 A 1 HETATM 21 C CAU RHN . . . G 3 -50.706 -11.929 -0.69 1 129.57 ? CAU RHN 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #