data_3R2B
#
_model_server_result.job_id            RFVQqFwk5XWszydQmhHIVA 
_model_server_result.datetime_utc      '2024-12-26 10:06:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1000}' 
#
_entry.id    3R2B 
#
_exptl.entry_id    3R2B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.434 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-[2-(1,3-benzodioxol-5-yl)pyrimidin-4-yl]-5',6'-dihydrospiro[piperidine-4,7'-pyrrolo[3,2-c]pyridin]-4'(1'H)-one" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R2B 
_cell.length_a            139.803 
_cell.length_b            180.249 
_cell.length_c            217.109 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,M 1 1 
B,N 2 1 
C 3 1 
D 4 1 
E 5 1 
F 6 1 
G 7 1 
H 8 1 
I 9 1 
J 10 1 
K 11 1 
L 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C22 H21 N5 O3' 
_chem_comp.formula_weight    403.434 
_chem_comp.id                05B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-[2-(1,3-benzodioxol-5-yl)pyrimidin-4-yl]-5',6'-dihydrospiro[piperidine-4,7'-pyrrolo[3,2-c]pyridin]-4'(1'H)-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 05B sing 1 n n 
C1 C6 05B sing 2 n n 
C1 C7 05B sing 3 n n 
C1 C11 05B sing 4 n n 
C2 N3 05B sing 5 n n 
N3 C4 05B sing 6 n n 
C4 O10 05B doub 7 n n 
C4 C12 05B sing 8 n n 
N5 C8 05B sing 9 n n 
N5 C9 05B sing 10 n n 
C6 C9 05B sing 11 n n 
C7 C8 05B sing 12 n n 
C11 C12 05B doub 13 n y 
C11 N15 05B sing 14 n y 
C12 C13 05B sing 15 n y 
C13 C14 05B doub 16 n y 
C14 N15 05B sing 17 n y 
C14 C16 05B sing 18 n y 
C16 C17 05B doub 19 n y 
C16 N21 05B sing 20 n y 
C17 C18 05B sing 21 n y 
C18 N19 05B doub 22 n y 
N19 C20 05B sing 23 n y 
C20 N21 05B doub 24 n y 
C20 C22 05B sing 25 n y 
C22 C23 05B doub 26 n y 
C22 C25 05B sing 27 n y 
C23 C24 05B sing 28 n y 
C24 C27 05B doub 29 n y 
C25 C26 05B doub 30 n y 
C26 C27 05B sing 31 n y 
C26 O30 05B sing 32 n n 
C27 O28 05B sing 33 n n 
O28 C29 05B sing 34 n n 
C29 O30 05B sing 35 n n 
C2 H2 05B sing 36 n n 
C2 H2A 05B sing 37 n n 
N3 HN3 05B sing 38 n n 
N5 HN5 05B sing 39 n n 
C6 H6 05B sing 40 n n 
C6 H6A 05B sing 41 n n 
C7 H7 05B sing 42 n n 
C7 H7A 05B sing 43 n n 
C8 H8 05B sing 44 n n 
C8 H8A 05B sing 45 n n 
C9 H9 05B sing 46 n n 
C9 H9A 05B sing 47 n n 
C13 H13 05B sing 48 n n 
N15 HN15 05B sing 49 n n 
C17 H17 05B sing 50 n n 
C18 H18 05B sing 51 n n 
C23 H23 05B sing 52 n n 
C24 H24 05B sing 53 n n 
C25 H25 05B sing 54 n n 
C29 H29 05B sing 55 n n 
C29 H29A 05B sing 56 n n 
#
_atom_sites.entry_id                     3R2B 
_atom_sites.fract_transf_matrix[1][1]    0.007153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 05B A 1 1000 1000 05B 05B . 
N 2 05B B 1 1000 1000 05B 05B . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 05B . . . N 2 -25.563 -36.298 -9.118 1 85.95 ? C1 05B 1000 B 1 
HETATM 2 C C2 05B . . . N 2 -25.736 -35.876 -7.649 1 85.87 ? C2 05B 1000 B 1 
HETATM 3 N N3 05B . . . N 2 -26.335 -34.56 -7.434 1 85.88 ? N3 05B 1000 B 1 
HETATM 4 C C4 05B . . . N 2 -27.183 -33.957 -8.302 1 85.71 ? C4 05B 1000 B 1 
HETATM 5 N N5 05B . . . N 2 -23.095 -37.792 -9.133 1 86.04 ? N5 05B 1000 B 1 
HETATM 6 C C6 05B . . . N 2 -24.286 -35.698 -9.732 1 86 ? C6 05B 1000 B 1 
HETATM 7 C C7 05B . . . N 2 -25.526 -37.833 -9.224 1 86.05 ? C7 05B 1000 B 1 
HETATM 8 C C8 05B . . . N 2 -24.283 -38.413 -8.543 1 86.03 ? C8 05B 1000 B 1 
HETATM 9 C C9 05B . . . N 2 -22.991 -36.329 -9.193 1 86.01 ? C9 05B 1000 B 1 
HETATM 10 O O10 05B . . . N 2 -27.664 -32.86 -8.091 1 85.13 ? O10 05B 1000 B 1 
HETATM 11 C C11 05B . . . N 2 -26.748 -35.804 -9.916 1 85.99 ? C11 05B 1000 B 1 
HETATM 12 C C12 05B . . . N 2 -27.504 -34.699 -9.527 1 85.87 ? C12 05B 1000 B 1 
HETATM 13 C C13 05B . . . N 2 -28.516 -34.51 -10.47 1 86.15 ? C13 05B 1000 B 1 
HETATM 14 C C14 05B . . . N 2 -28.352 -35.485 -11.406 1 86.51 ? C14 05B 1000 B 1 
HETATM 15 N N15 05B . . . N 2 -27.273 -36.261 -11.049 1 86.33 ? N15 05B 1000 B 1 
HETATM 16 C C16 05B . . . N 2 -29.177 -35.714 -12.604 1 87.14 ? C16 05B 1000 B 1 
HETATM 17 C C17 05B . . . N 2 -30.181 -34.823 -13.006 1 87.37 ? C17 05B 1000 B 1 
HETATM 18 C C18 05B . . . N 2 -30.904 -35.131 -14.145 1 87.68 ? C18 05B 1000 B 1 
HETATM 19 N N19 05B . . . N 2 -30.637 -36.246 -14.815 1 88.14 ? N19 05B 1000 B 1 
HETATM 20 C C20 05B . . . N 2 -29.68 -37.075 -14.406 1 88.64 ? C20 05B 1000 B 1 
HETATM 21 N N21 05B . . . N 2 -28.964 -36.815 -13.325 1 87.75 ? N21 05B 1000 B 1 
HETATM 22 C C22 05B . . . N 2 -29.382 -38.315 -15.16 1 89.81 ? C22 05B 1000 B 1 
HETATM 23 C C23 05B . . . N 2 -30.41 -39.141 -15.629 1 90.31 ? C23 05B 1000 B 1 
HETATM 24 C C24 05B . . . N 2 -30.102 -40.295 -16.33 1 90.67 ? C24 05B 1000 B 1 
HETATM 25 C C25 05B . . . N 2 -28.049 -38.666 -15.401 1 90.51 ? C25 05B 1000 B 1 
HETATM 26 C C26 05B . . . N 2 -27.745 -39.817 -16.102 1 90.95 ? C26 05B 1000 B 1 
HETATM 27 C C27 05B . . . N 2 -28.775 -40.639 -16.568 1 91.02 ? C27 05B 1000 B 1 
HETATM 28 O O28 05B . . . N 2 -28.213 -41.7 -17.22 1 91.37 ? O28 05B 1000 B 1 
HETATM 29 C C29 05B . . . N 2 -26.839 -41.737 -16.789 1 91.39 ? C29 05B 1000 B 1 
HETATM 30 O O30 05B . . . N 2 -26.545 -40.362 -16.459 1 91.27 ? O30 05B 1000 B 1 
#
_model_server_stats.io_time_ms              206 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#