data_3R2D
#
_model_server_result.job_id            D4Q_qVHpySNCq6s24nnsZQ 
_model_server_result.datetime_utc      '2024-11-04 23:11:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r2d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":152}' 
#
_entry.id    3R2D 
#
_exptl.entry_id    3R2D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R2D 
_cell.length_a            76.786 
_cell.length_b            79.94 
_cell.length_c            106.599 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R2D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,L,N,P,Q 1 1 
B,D,E,F,H,I,J,K,M,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 E N1 G 2 R G 2 1_555 F N3 C 11 S C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 E N2 G 2 R G 2 1_555 F O2 C 11 S C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 E O6 G 2 R G 2 1_555 F N4 C 11 S C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-A MISPAIR' hydrog4 E O6 G 2 R G 2 1_555 F N6 A 12 S A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 E N3 C 5 R C 5 1_555 F N1 G 10 S G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 E N4 C 5 R C 5 1_555 F O6 G 10 S G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 E O2 C 5 R C 5 1_555 F N2 G 10 S G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 E N3 C 6 R C 6 1_555 F N1 G 9 S G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 E N4 C 6 R C 6 1_555 F O6 G 9 S G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 E O2 C 6 R C 6 1_555 F N2 G 9 S G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog11 E N3 U 7 R U 7 1_555 F O4 U 8 S U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog12 E O2 U 7 R U 7 1_555 F N3 U 8 S U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog13 E N3 U 8 R U 8 1_555 F O2 U 7 S U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog14 E O4 U 8 R U 8 1_555 F N3 U 7 S U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 E N1 G 9 R G 9 1_555 F N3 C 6 S C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 E N2 G 9 R G 9 1_555 F O2 C 6 S C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 E O6 G 9 R G 9 1_555 F N4 C 6 S C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 E N1 G 10 R G 10 1_555 F N3 C 5 S C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 E N2 G 10 R G 10 1_555 F O2 C 5 S C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 E O6 G 10 R G 10 1_555 F N4 C 5 S C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 339 n n 
C1 C2 PEG sing 340 n n 
C1 H11 PEG sing 341 n n 
C1 H12 PEG sing 342 n n 
O1 HO1 PEG sing 343 n n 
C2 O2 PEG sing 344 n n 
C2 H21 PEG sing 345 n n 
C2 H22 PEG sing 346 n n 
O2 C3 PEG sing 347 n n 
C3 C4 PEG sing 348 n n 
C3 H31 PEG sing 349 n n 
C3 H32 PEG sing 350 n n 
C4 O4 PEG sing 351 n n 
C4 H41 PEG sing 352 n n 
C4 H42 PEG sing 353 n n 
O4 HO4 PEG sing 354 n n 
#
_atom_sites.entry_id                     3R2D 
_atom_sites.fract_transf_matrix[1][1]    0.013023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009381 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 PEG A 1 149 2 PEG PEG . 
H 4 PEG B 1 149 1 PEG PEG . 
I 4 PEG B 1 150 3 PEG PEG . 
J 4 PEG B 1 151 4 PEG PEG . 
K 4 PEG B 1 152 5 PEG PEG . 
L 5 HOH A 1 150 3 HOH HOH . 
L 5 HOH A 2 151 6 HOH HOH . 
L 5 HOH A 3 152 14 HOH HOH . 
L 5 HOH A 4 153 16 HOH HOH . 
L 5 HOH A 5 154 23 HOH HOH . 
L 5 HOH A 6 155 26 HOH HOH . 
L 5 HOH A 7 156 28 HOH HOH . 
L 5 HOH A 8 157 36 HOH HOH . 
L 5 HOH A 9 158 37 HOH HOH . 
L 5 HOH A 10 159 38 HOH HOH . 
L 5 HOH A 11 160 39 HOH HOH . 
L 5 HOH A 12 161 40 HOH HOH . 
L 5 HOH A 13 162 54 HOH HOH . 
L 5 HOH A 14 163 55 HOH HOH . 
L 5 HOH A 15 164 56 HOH HOH . 
L 5 HOH A 16 165 70 HOH HOH . 
L 5 HOH A 17 166 77 HOH HOH . 
L 5 HOH A 18 167 78 HOH HOH . 
L 5 HOH A 19 168 79 HOH HOH . 
L 5 HOH A 20 169 81 HOH HOH . 
L 5 HOH A 21 170 82 HOH HOH . 
L 5 HOH A 22 171 83 HOH HOH . 
L 5 HOH A 23 172 84 HOH HOH . 
L 5 HOH A 24 173 91 HOH HOH . 
M 5 HOH B 1 153 2 HOH HOH . 
M 5 HOH B 2 154 4 HOH HOH . 
M 5 HOH B 3 155 10 HOH HOH . 
M 5 HOH B 4 156 12 HOH HOH . 
M 5 HOH B 5 157 13 HOH HOH . 
M 5 HOH B 6 158 17 HOH HOH . 
M 5 HOH B 7 159 20 HOH HOH . 
M 5 HOH B 8 160 35 HOH HOH . 
M 5 HOH B 9 161 43 HOH HOH . 
M 5 HOH B 10 162 44 HOH HOH . 
M 5 HOH B 11 163 45 HOH HOH . 
M 5 HOH B 12 164 46 HOH HOH . 
M 5 HOH B 13 165 47 HOH HOH . 
M 5 HOH B 14 166 49 HOH HOH . 
M 5 HOH B 15 167 52 HOH HOH . 
M 5 HOH B 16 168 59 HOH HOH . 
M 5 HOH B 17 169 60 HOH HOH . 
M 5 HOH B 18 170 61 HOH HOH . 
M 5 HOH B 19 171 62 HOH HOH . 
M 5 HOH B 20 172 63 HOH HOH . 
M 5 HOH B 21 173 68 HOH HOH . 
M 5 HOH B 22 174 71 HOH HOH . 
M 5 HOH B 23 175 75 HOH HOH . 
M 5 HOH B 24 176 86 HOH HOH . 
M 5 HOH B 25 177 87 HOH HOH . 
M 5 HOH B 26 178 90 HOH HOH . 
M 5 HOH B 27 179 94 HOH HOH . 
M 5 HOH B 28 180 97 HOH HOH . 
M 5 HOH B 29 181 18 HOH HOH . 
N 5 HOH J 1 84 7 HOH HOH . 
N 5 HOH J 2 85 85 HOH HOH . 
N 5 HOH J 3 86 27 HOH HOH . 
N 5 HOH J 4 87 31 HOH HOH . 
N 5 HOH J 5 88 41 HOH HOH . 
N 5 HOH J 6 89 42 HOH HOH . 
N 5 HOH J 7 90 50 HOH HOH . 
N 5 HOH J 8 91 51 HOH HOH . 
N 5 HOH J 9 92 74 HOH HOH . 
O 5 HOH K 1 84 9 HOH HOH . 
O 5 HOH K 2 85 19 HOH HOH . 
O 5 HOH K 3 86 25 HOH HOH . 
O 5 HOH K 4 87 30 HOH HOH . 
O 5 HOH K 5 88 88 HOH HOH . 
O 5 HOH K 6 89 89 HOH HOH . 
O 5 HOH K 7 90 33 HOH HOH . 
O 5 HOH K 8 91 48 HOH HOH . 
O 5 HOH K 9 92 53 HOH HOH . 
O 5 HOH K 10 93 64 HOH HOH . 
O 5 HOH K 11 94 65 HOH HOH . 
O 5 HOH K 12 95 66 HOH HOH . 
O 5 HOH K 13 96 73 HOH HOH . 
O 5 HOH K 14 98 98 HOH HOH . 
P 5 HOH R 1 76 76 HOH HOH . 
P 5 HOH R 2 80 80 HOH HOH . 
P 5 HOH R 3 95 95 HOH HOH . 
P 5 HOH R 4 96 96 HOH HOH . 
Q 5 HOH S 1 13 1 HOH HOH . 
Q 5 HOH S 2 14 5 HOH HOH . 
Q 5 HOH S 3 15 15 HOH HOH . 
Q 5 HOH S 4 16 8 HOH HOH . 
Q 5 HOH S 5 17 11 HOH HOH . 
Q 5 HOH S 6 21 21 HOH HOH . 
Q 5 HOH S 7 22 22 HOH HOH . 
Q 5 HOH S 8 24 24 HOH HOH . 
Q 5 HOH S 9 29 29 HOH HOH . 
Q 5 HOH S 10 32 32 HOH HOH . 
Q 5 HOH S 11 34 34 HOH HOH . 
Q 5 HOH S 12 57 57 HOH HOH . 
Q 5 HOH S 13 58 58 HOH HOH . 
Q 5 HOH S 14 67 67 HOH HOH . 
Q 5 HOH S 15 69 69 HOH HOH . 
Q 5 HOH S 16 72 72 HOH HOH . 
Q 5 HOH S 17 92 92 HOH HOH . 
Q 5 HOH S 18 93 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . K 4 29.32 16.09 18.548 1 97.61 ? C1 PEG 152 B 1 
HETATM 2 O O1 PEG . . . K 4 29.837 14.795 18.685 1 108.73 ? O1 PEG 152 B 1 
HETATM 3 C C2 PEG . . . K 4 30.351 16.988 17.865 1 101.32 ? C2 PEG 152 B 1 
HETATM 4 O O2 PEG . . . K 4 30.972 16.312 16.804 1 104.68 ? O2 PEG 152 B 1 
HETATM 5 C C3 PEG . . . K 4 32.175 15.625 17.015 1 101 ? C3 PEG 152 B 1 
HETATM 6 C C4 PEG . . . K 4 32.343 14.5 15.997 1 86.06 ? C4 PEG 152 B 1 
HETATM 7 O O4 PEG . . . K 4 33.194 13.519 16.529 1 75.34 ? O4 PEG 152 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#