data_3R2F # _model_server_result.job_id 5uS1eX6PBj-9mMwzhmYaQA _model_server_result.datetime_utc '2024-10-19 16:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":394}' # _entry.id 3R2F # _exptl.entry_id 3R2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.803 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(2R,4R)-4-propoxypyrrolidin-2-yl]propan-2-yl}-4-phenylbutanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.53 _cell.angle_gamma 90 _cell.entry_id 3R2F _cell.length_a 86.306 _cell.length_b 130.255 _cell.length_c 86.927 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 155 1_555 A SG CYS 421 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf2 A SG CYS 279 A CYS 217 1_555 A SG CYS 444 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf3 A SG CYS 331 A CYS 269 1_555 A SG CYS 381 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf4 B SG CYS 217 B CYS 155 1_555 B SG CYS 421 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? disulf ? disulf5 B SG CYS 279 B CYS 217 1_555 B SG CYS 444 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf6 B SG CYS 331 B CYS 269 1_555 B SG CYS 381 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? disulf ? disulf7 C SG CYS 217 D CYS 155 1_555 C SG CYS 421 D CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf8 C SG CYS 331 D CYS 269 1_555 C SG CYS 381 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf9 D SG CYS 217 E CYS 155 1_555 D SG CYS 421 E CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf10 D SG CYS 279 E CYS 217 1_555 D SG CYS 444 E CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? disulf ? disulf11 D SG CYS 331 E CYS 269 1_555 D SG CYS 381 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? # _chem_comp.formula 'C36 H50 F2 N4 O5' _chem_comp.formula_weight 656.803 _chem_comp.id PB0 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(2R,4R)-4-propoxypyrrolidin-2-yl]propan-2-yl}-4-phenylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3R2F _atom_sites.fract_transf_matrix[1][1] 0.011587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001326 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PB0 A 1 394 1 PB0 PB0 . F 2 PB0 B 1 394 2 PB0 PB0 . G 2 PB0 D 1 394 3 PB0 PB0 . H 2 PB0 E 1 394 4 PB0 PB0 . I 3 HOH A 1 395 2 HOH HOH . I 3 HOH A 2 396 7 HOH HOH . I 3 HOH A 3 397 9 HOH HOH . I 3 HOH A 4 398 10 HOH HOH . I 3 HOH A 5 399 11 HOH HOH . I 3 HOH A 6 400 14 HOH HOH . I 3 HOH A 7 401 31 HOH HOH . I 3 HOH A 8 402 32 HOH HOH . I 3 HOH A 9 403 34 HOH HOH . I 3 HOH A 10 404 35 HOH HOH . I 3 HOH A 11 405 36 HOH HOH . I 3 HOH A 12 406 38 HOH HOH . I 3 HOH A 13 407 54 HOH HOH . I 3 HOH A 14 408 60 HOH HOH . I 3 HOH A 15 409 64 HOH HOH . I 3 HOH A 16 410 74 HOH HOH . I 3 HOH A 17 411 77 HOH HOH . I 3 HOH A 18 412 81 HOH HOH . I 3 HOH A 19 413 88 HOH HOH . I 3 HOH A 20 414 91 HOH HOH . I 3 HOH A 21 415 97 HOH HOH . I 3 HOH A 22 416 105 HOH HOH . I 3 HOH A 23 417 106 HOH HOH . I 3 HOH A 24 418 107 HOH HOH . I 3 HOH A 25 419 109 HOH HOH . I 3 HOH A 26 420 111 HOH HOH . I 3 HOH A 27 421 117 HOH HOH . I 3 HOH A 28 422 120 HOH HOH . J 3 HOH B 1 395 1 HOH HOH . J 3 HOH B 2 396 3 HOH HOH . J 3 HOH B 3 397 4 HOH HOH . J 3 HOH B 4 398 5 HOH HOH . J 3 HOH B 5 399 15 HOH HOH . J 3 HOH B 6 400 16 HOH HOH . J 3 HOH B 7 401 19 HOH HOH . J 3 HOH B 8 402 21 HOH HOH . J 3 HOH B 9 403 22 HOH HOH . J 3 HOH B 10 404 29 HOH HOH . J 3 HOH B 11 405 37 HOH HOH . J 3 HOH B 12 406 40 HOH HOH . J 3 HOH B 13 407 41 HOH HOH . J 3 HOH B 14 408 44 HOH HOH . J 3 HOH B 15 409 46 HOH HOH . J 3 HOH B 16 410 51 HOH HOH . J 3 HOH B 17 411 53 HOH HOH . J 3 HOH B 18 412 56 HOH HOH . J 3 HOH B 19 413 58 HOH HOH . J 3 HOH B 20 414 59 HOH HOH . J 3 HOH B 21 415 62 HOH HOH . J 3 HOH B 22 416 63 HOH HOH . J 3 HOH B 23 417 65 HOH HOH . J 3 HOH B 24 418 66 HOH HOH . J 3 HOH B 25 419 70 HOH HOH . J 3 HOH B 26 420 73 HOH HOH . J 3 HOH B 27 421 75 HOH HOH . J 3 HOH B 28 422 79 HOH HOH . J 3 HOH B 29 423 82 HOH HOH . J 3 HOH B 30 424 84 HOH HOH . J 3 HOH B 31 425 87 HOH HOH . J 3 HOH B 32 426 89 HOH HOH . J 3 HOH B 33 427 92 HOH HOH . J 3 HOH B 34 428 93 HOH HOH . J 3 HOH B 35 429 95 HOH HOH . J 3 HOH B 36 430 100 HOH HOH . J 3 HOH B 37 431 101 HOH HOH . J 3 HOH B 38 432 103 HOH HOH . J 3 HOH B 39 433 104 HOH HOH . J 3 HOH B 40 434 108 HOH HOH . J 3 HOH B 41 435 115 HOH HOH . J 3 HOH B 42 436 118 HOH HOH . J 3 HOH B 43 437 121 HOH HOH . J 3 HOH B 44 438 122 HOH HOH . K 3 HOH D 1 395 6 HOH HOH . K 3 HOH D 2 396 17 HOH HOH . K 3 HOH D 3 397 18 HOH HOH . K 3 HOH D 4 398 23 HOH HOH . K 3 HOH D 5 399 27 HOH HOH . K 3 HOH D 6 400 28 HOH HOH . K 3 HOH D 7 401 33 HOH HOH . K 3 HOH D 8 402 43 HOH HOH . K 3 HOH D 9 403 45 HOH HOH . K 3 HOH D 10 404 48 HOH HOH . K 3 HOH D 11 405 52 HOH HOH . K 3 HOH D 12 406 57 HOH HOH . K 3 HOH D 13 407 61 HOH HOH . K 3 HOH D 14 408 68 HOH HOH . K 3 HOH D 15 409 83 HOH HOH . K 3 HOH D 16 410 85 HOH HOH . K 3 HOH D 17 411 94 HOH HOH . K 3 HOH D 18 412 98 HOH HOH . K 3 HOH D 19 413 99 HOH HOH . K 3 HOH D 20 414 112 HOH HOH . K 3 HOH D 21 415 114 HOH HOH . K 3 HOH D 22 416 119 HOH HOH . L 3 HOH E 1 395 8 HOH HOH . L 3 HOH E 2 396 12 HOH HOH . L 3 HOH E 3 397 13 HOH HOH . L 3 HOH E 4 398 20 HOH HOH . L 3 HOH E 5 399 24 HOH HOH . L 3 HOH E 6 400 25 HOH HOH . L 3 HOH E 7 401 26 HOH HOH . L 3 HOH E 8 402 30 HOH HOH . L 3 HOH E 9 403 39 HOH HOH . L 3 HOH E 10 404 42 HOH HOH . L 3 HOH E 11 405 47 HOH HOH . L 3 HOH E 12 406 49 HOH HOH . L 3 HOH E 13 407 50 HOH HOH . L 3 HOH E 14 408 55 HOH HOH . L 3 HOH E 15 409 67 HOH HOH . L 3 HOH E 16 410 69 HOH HOH . L 3 HOH E 17 411 71 HOH HOH . L 3 HOH E 18 412 72 HOH HOH . L 3 HOH E 19 413 76 HOH HOH . L 3 HOH E 20 414 78 HOH HOH . L 3 HOH E 21 415 80 HOH HOH . L 3 HOH E 22 416 86 HOH HOH . L 3 HOH E 23 417 90 HOH HOH . L 3 HOH E 24 418 96 HOH HOH . L 3 HOH E 25 419 102 HOH HOH . L 3 HOH E 26 420 110 HOH HOH . L 3 HOH E 27 421 113 HOH HOH . L 3 HOH E 28 422 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PB0 . . . G 2 72.613 65.52 67.052 1 20.82 ? C1 PB0 394 D 1 HETATM 2 C C2 PB0 . . . G 2 73.298 64.513 67.736 1 21.98 ? C2 PB0 394 D 1 HETATM 3 C C3 PB0 . . . G 2 71.802 66.42 67.744 1 21.08 ? C3 PB0 394 D 1 HETATM 4 C C4 PB0 . . . G 2 73.167 64.401 69.121 1 19.84 ? C4 PB0 394 D 1 HETATM 5 C C5 PB0 . . . G 2 71.678 66.313 69.125 1 19.78 ? C5 PB0 394 D 1 HETATM 6 C C6 PB0 . . . G 2 75.124 70.286 75.589 1 19.53 ? C6 PB0 394 D 1 HETATM 7 C C7 PB0 . . . G 2 73.179 70.198 76.961 1 17.57 ? C7 PB0 394 D 1 HETATM 8 C C8 PB0 . . . G 2 73.496 72.047 75.419 1 18.02 ? C8 PB0 394 D 1 HETATM 9 C C9 PB0 . . . G 2 72.349 65.293 69.802 1 19.77 ? C9 PB0 394 D 1 HETATM 10 C C10 PB0 . . . G 2 74.381 69.631 76.564 1 17.67 ? C10 PB0 394 D 1 HETATM 11 C C11 PB0 . . . G 2 74.685 71.479 75.023 1 18.16 ? C11 PB0 394 D 1 HETATM 12 C C12 PB0 . . . G 2 72.743 71.393 76.393 1 19.76 ? C12 PB0 394 D 1 HETATM 13 C C13 PB0 . . . G 2 70.739 67.318 74.032 1 20.12 ? C13 PB0 394 D 1 HETATM 14 C C14 PB0 . . . G 2 68.407 68.091 72.387 1 25.33 ? C14 PB0 394 D 1 HETATM 15 C C15 PB0 . . . G 2 74.256 66.821 74.041 1 19.22 ? C15 PB0 394 D 1 HETATM 16 C C16 PB0 . . . G 2 70.878 69.694 73.631 1 17.13 ? C16 PB0 394 D 1 HETATM 17 C C17 PB0 . . . G 2 77.717 65.321 75.149 1 16.42 ? C17 PB0 394 D 1 HETATM 18 C C18 PB0 . . . G 2 72.227 68.988 73.491 1 18.86 ? C18 PB0 394 D 1 HETATM 19 C C19 PB0 . . . G 2 77.96 63.065 76.003 1 16.44 ? C19 PB0 394 D 1 HETATM 20 C C20 PB0 . . . G 2 78.698 64.138 75.215 1 16.95 ? C20 PB0 394 D 1 HETATM 21 C C21 PB0 . . . G 2 76.467 64.919 75.953 1 17.6 ? C21 PB0 394 D 1 HETATM 22 C C22 PB0 . . . G 2 70.013 68.604 74.274 1 20.87 ? C22 PB0 394 D 1 HETATM 23 C C23 PB0 . . . G 2 66.976 68.199 71.878 1 22.37 ? C23 PB0 394 D 1 HETATM 24 C C24 PB0 . . . G 2 81.829 65.841 77.512 1 12.25 ? C24 PB0 394 D 1 HETATM 25 C C25 PB0 . . . G 2 69.294 69.393 78.003 1 22.7 ? C25 PB0 394 D 1 HETATM 26 C C26 PB0 . . . G 2 67.844 70.028 76.168 1 19.94 ? C26 PB0 394 D 1 HETATM 27 C C27 PB0 . . . G 2 72.241 65.186 71.297 1 20 ? C27 PB0 394 D 1 HETATM 28 C C28 PB0 . . . G 2 74.849 68.33 77.198 1 19.19 ? C28 PB0 394 D 1 HETATM 29 C C29 PB0 . . . G 2 70.082 68.876 75.789 1 18.98 ? C29 PB0 394 D 1 HETATM 30 C C30 PB0 . . . G 2 81.519 66.301 76.076 1 16.28 ? C30 PB0 394 D 1 HETATM 31 C C31 PB0 . . . G 2 73.209 66.255 71.821 1 20.28 ? C31 PB0 394 D 1 HETATM 32 C C32 PB0 . . . G 2 80.86 65.234 75.179 1 15.68 ? C32 PB0 394 D 1 HETATM 33 C C33 PB0 . . . G 2 72.986 66.506 73.308 1 20.35 ? C33 PB0 394 D 1 HETATM 34 C C34 PB0 . . . G 2 75.887 66.036 76.861 1 16.59 ? C34 PB0 394 D 1 HETATM 35 C C35 PB0 . . . G 2 68.812 68.941 76.624 1 19.62 ? C35 PB0 394 D 1 HETATM 36 C C36 PB0 . . . G 2 75.312 67.283 76.168 1 17.88 ? C36 PB0 394 D 1 HETATM 37 N N37 PB0 . . . G 2 76.962 63.804 76.82 1 16.62 ? N37 PB0 394 D 1 HETATM 38 N N38 PB0 . . . G 2 71.989 67.546 73.605 1 19.8 ? N38 PB0 394 D 1 HETATM 39 N N39 PB0 . . . G 2 68.691 68.605 73.619 1 22.13 ? N39 PB0 394 D 1 HETATM 40 N N40 PB0 . . . G 2 74.15 66.962 75.361 1 18.36 ? N40 PB0 394 D 1 HETATM 41 O O41 PB0 . . . G 2 70.216 66.235 74.241 1 21.38 ? O41 PB0 394 D 1 HETATM 42 O O42 PB0 . . . G 2 69.228 67.539 71.646 1 23.71 ? O42 PB0 394 D 1 HETATM 43 O O43 PB0 . . . G 2 75.341 66.938 73.504 1 18.93 ? O43 PB0 394 D 1 HETATM 44 O O44 PB0 . . . G 2 76.926 66.491 77.727 1 17.26 ? O44 PB0 394 D 1 HETATM 45 O O45 PB0 . . . G 2 79.915 64.431 75.92 1 18.91 ? O45 PB0 394 D 1 HETATM 46 F F46 PB0 . . . G 2 75.404 72.092 74.086 1 19.21 ? F46 PB0 394 D 1 HETATM 47 F F47 PB0 . . . G 2 71.578 71.924 76.798 1 22.06 ? F47 PB0 394 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #