data_3R2J
#
_model_server_result.job_id            WoDUwTaTNBMFbOjXoK2Nzg 
_model_server_result.datetime_utc      '2024-12-21 16:14:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":311}' 
#
_entry.id    3R2J 
#
_exptl.entry_id    3R2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              123.109 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICOTINIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R2J 
_cell.length_a            123.386 
_cell.length_b            123.386 
_cell.length_c            114.993 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O,P 1 1 
C,D,J,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 82 A ASP 73 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 A NE2 HIS 84 A HIS 75 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc3 A NE2 HIS 101 A HIS 92 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 E ZN ZN . A ZN 301 1_555 F N NIO . A NIO 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc5 B OD2 ASP 82 B ASP 73 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc6 B NE2 HIS 84 B HIS 75 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc7 B NE2 HIS 101 B HIS 92 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc8 G ZN ZN . B ZN 301 1_555 H N NIO . B NIO 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc9 C OD2 ASP 82 C ASP 73 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc10 C NE2 HIS 84 C HIS 75 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc11 C NE2 HIS 101 C HIS 92 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc12 J ZN ZN . C ZN 301 1_555 K N NIO . C NIO 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc13 D OD2 ASP 82 D ASP 73 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc14 D NE2 HIS 84 D HIS 75 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc15 D NE2 HIS 101 D HIS 92 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc16 L ZN ZN . D ZN 301 1_555 M N NIO . D NIO 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C6 H5 N O2' 
_chem_comp.formula_weight    123.109 
_chem_comp.id                NIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICOTINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C1 NIO doub 237 n y 
N C5 NIO sing 238 n y 
C1 C2 NIO sing 239 n y 
C1 H1 NIO sing 240 n n 
C2 C3 NIO doub 241 n y 
C2 C6 NIO sing 242 n n 
C3 C4 NIO sing 243 n y 
C3 H3 NIO sing 244 n n 
C4 C5 NIO doub 245 n y 
C4 H4 NIO sing 246 n n 
C5 H5 NIO sing 247 n n 
C6 O1 NIO doub 248 n n 
C6 O2 NIO sing 249 n n 
O2 HO2 NIO sing 250 n n 
#
_atom_sites.entry_id                     3R2J 
_atom_sites.fract_transf_matrix[1][1]    0.008105 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 301 301 ZN ZN . 
F 3 NIO A 1 311 311 NIO NIO . 
G 2 ZN B 1 301 301 ZN ZN . 
H 3 NIO B 1 311 311 NIO NIO . 
I 4 CL B 1 321 321 CL CL . 
J 2 ZN C 1 301 301 ZN ZN . 
K 3 NIO C 1 311 311 NIO NIO . 
L 2 ZN D 1 301 301 ZN ZN . 
M 3 NIO D 1 311 311 NIO NIO . 
N 4 CL D 1 321 321 CL CL . 
O 5 HOH A 1 401 401 HOH HOH . 
O 5 HOH A 2 402 402 HOH HOH . 
O 5 HOH A 3 403 403 HOH HOH . 
O 5 HOH A 4 404 404 HOH HOH . 
O 5 HOH A 5 405 405 HOH HOH . 
O 5 HOH A 6 406 406 HOH HOH . 
O 5 HOH A 7 407 407 HOH HOH . 
O 5 HOH A 8 408 408 HOH HOH . 
O 5 HOH A 9 409 409 HOH HOH . 
O 5 HOH A 10 410 410 HOH HOH . 
O 5 HOH A 11 411 411 HOH HOH . 
O 5 HOH A 12 412 412 HOH HOH . 
O 5 HOH A 13 413 413 HOH HOH . 
O 5 HOH A 14 414 414 HOH HOH . 
O 5 HOH A 15 415 415 HOH HOH . 
O 5 HOH A 16 416 416 HOH HOH . 
O 5 HOH A 17 417 417 HOH HOH . 
O 5 HOH A 18 418 418 HOH HOH . 
O 5 HOH A 19 419 419 HOH HOH . 
O 5 HOH A 20 420 420 HOH HOH . 
O 5 HOH A 21 421 421 HOH HOH . 
O 5 HOH A 22 422 422 HOH HOH . 
O 5 HOH A 23 423 423 HOH HOH . 
O 5 HOH A 24 424 424 HOH HOH . 
O 5 HOH A 25 425 425 HOH HOH . 
O 5 HOH A 26 426 426 HOH HOH . 
O 5 HOH A 27 427 427 HOH HOH . 
P 5 HOH B 1 401 401 HOH HOH . 
P 5 HOH B 2 402 402 HOH HOH . 
P 5 HOH B 3 403 403 HOH HOH . 
P 5 HOH B 4 404 404 HOH HOH . 
P 5 HOH B 5 405 405 HOH HOH . 
P 5 HOH B 6 406 406 HOH HOH . 
P 5 HOH B 7 407 407 HOH HOH . 
P 5 HOH B 8 408 408 HOH HOH . 
P 5 HOH B 9 409 409 HOH HOH . 
P 5 HOH B 10 410 410 HOH HOH . 
P 5 HOH B 11 411 411 HOH HOH . 
P 5 HOH B 12 412 412 HOH HOH . 
P 5 HOH B 13 413 413 HOH HOH . 
P 5 HOH B 14 414 414 HOH HOH . 
P 5 HOH B 15 415 415 HOH HOH . 
P 5 HOH B 16 416 416 HOH HOH . 
P 5 HOH B 17 417 417 HOH HOH . 
P 5 HOH B 18 418 418 HOH HOH . 
P 5 HOH B 19 419 419 HOH HOH . 
P 5 HOH B 20 420 420 HOH HOH . 
P 5 HOH B 21 421 421 HOH HOH . 
P 5 HOH B 22 422 422 HOH HOH . 
P 5 HOH B 23 423 423 HOH HOH . 
P 5 HOH B 24 424 424 HOH HOH . 
P 5 HOH B 25 425 425 HOH HOH . 
P 5 HOH B 26 426 426 HOH HOH . 
P 5 HOH B 27 427 427 HOH HOH . 
P 5 HOH B 28 428 428 HOH HOH . 
P 5 HOH B 29 429 429 HOH HOH . 
P 5 HOH B 30 430 430 HOH HOH . 
P 5 HOH B 31 431 431 HOH HOH . 
P 5 HOH B 32 432 432 HOH HOH . 
P 5 HOH B 33 433 433 HOH HOH . 
P 5 HOH B 34 434 434 HOH HOH . 
P 5 HOH B 35 435 435 HOH HOH . 
Q 5 HOH C 1 401 401 HOH HOH . 
Q 5 HOH C 2 402 402 HOH HOH . 
Q 5 HOH C 3 403 403 HOH HOH . 
Q 5 HOH C 4 404 404 HOH HOH . 
Q 5 HOH C 5 405 405 HOH HOH . 
Q 5 HOH C 6 406 406 HOH HOH . 
Q 5 HOH C 7 407 407 HOH HOH . 
Q 5 HOH C 8 408 408 HOH HOH . 
Q 5 HOH C 9 409 409 HOH HOH . 
Q 5 HOH C 10 410 410 HOH HOH . 
Q 5 HOH C 11 411 411 HOH HOH . 
Q 5 HOH C 12 412 412 HOH HOH . 
Q 5 HOH C 13 413 413 HOH HOH . 
Q 5 HOH C 14 414 414 HOH HOH . 
Q 5 HOH C 15 415 415 HOH HOH . 
Q 5 HOH C 16 416 416 HOH HOH . 
Q 5 HOH C 17 417 417 HOH HOH . 
Q 5 HOH C 18 418 418 HOH HOH . 
Q 5 HOH C 19 419 419 HOH HOH . 
Q 5 HOH C 20 420 420 HOH HOH . 
Q 5 HOH C 21 421 421 HOH HOH . 
Q 5 HOH C 22 422 422 HOH HOH . 
Q 5 HOH C 23 423 423 HOH HOH . 
Q 5 HOH C 24 424 424 HOH HOH . 
Q 5 HOH C 25 425 425 HOH HOH . 
Q 5 HOH C 26 426 426 HOH HOH . 
Q 5 HOH C 27 427 427 HOH HOH . 
Q 5 HOH C 28 428 428 HOH HOH . 
Q 5 HOH C 29 429 429 HOH HOH . 
Q 5 HOH C 30 430 430 HOH HOH . 
Q 5 HOH C 31 431 431 HOH HOH . 
R 5 HOH D 1 401 401 HOH HOH . 
R 5 HOH D 2 402 402 HOH HOH . 
R 5 HOH D 3 403 403 HOH HOH . 
R 5 HOH D 4 404 404 HOH HOH . 
R 5 HOH D 5 405 405 HOH HOH . 
R 5 HOH D 6 406 406 HOH HOH . 
R 5 HOH D 7 407 407 HOH HOH . 
R 5 HOH D 8 408 408 HOH HOH . 
R 5 HOH D 9 409 409 HOH HOH . 
R 5 HOH D 10 410 410 HOH HOH . 
R 5 HOH D 11 411 411 HOH HOH . 
R 5 HOH D 12 412 412 HOH HOH . 
R 5 HOH D 13 413 413 HOH HOH . 
R 5 HOH D 14 414 414 HOH HOH . 
R 5 HOH D 15 415 415 HOH HOH . 
R 5 HOH D 16 416 416 HOH HOH . 
R 5 HOH D 17 417 417 HOH HOH . 
R 5 HOH D 18 418 418 HOH HOH . 
R 5 HOH D 19 419 419 HOH HOH . 
R 5 HOH D 20 420 420 HOH HOH . 
R 5 HOH D 21 421 421 HOH HOH . 
R 5 HOH D 22 422 422 HOH HOH . 
R 5 HOH D 23 423 423 HOH HOH . 
R 5 HOH D 24 424 424 HOH HOH . 
R 5 HOH D 25 425 425 HOH HOH . 
R 5 HOH D 26 426 426 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NIO . . . M 3 76.059 71.703 38.248 1 29.52 ? N NIO 311 D 1 
HETATM 2 C C1 NIO . . . M 3 77.183 71.245 38.8 1 27.84 ? C1 NIO 311 D 1 
HETATM 3 C C2 NIO . . . M 3 77.238 70.845 40.141 1 28.6 ? C2 NIO 311 D 1 
HETATM 4 C C3 NIO . . . M 3 76.065 70.94 40.891 1 30.42 ? C3 NIO 311 D 1 
HETATM 5 C C4 NIO . . . M 3 74.898 71.425 40.286 1 31.74 ? C4 NIO 311 D 1 
HETATM 6 C C5 NIO . . . M 3 74.93 71.8 38.941 1 31.16 ? C5 NIO 311 D 1 
HETATM 7 C C6 NIO . . . M 3 78.573 70.327 40.763 1 27.83 ? C6 NIO 311 D 1 
HETATM 8 O O1 NIO . . . M 3 79.288 69.597 40.043 1 27.5 ? O1 NIO 311 D 1 
HETATM 9 O O2 NIO . . . M 3 78.911 70.681 41.92 1 26.82 ? O2 NIO 311 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#