data_3R2K # _model_server_result.job_id inDKzr61eSwF-2hxUIip8w _model_server_result.datetime_utc '2024-10-19 08:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":155}' # _entry.id 3R2K # _exptl.entry_id 3R2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R2K _cell.length_a 172.59 _cell.length_b 172.59 _cell.length_c 172.59 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 18 A GLU 18 1_555 B NA NA . A NA 155 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 A OE2 GLU 18 A GLU 18 1_555 B NA NA . A NA 155 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc3 A OE1 GLU 51 A GLU 51 1_555 B NA NA . A NA 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 A OE2 GLU 51 A GLU 51 1_555 C NA NA . A NA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 A OE2 GLU 93 A GLU 93 1_555 C NA NA . A NA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 A OE1 GLU 93 A GLU 93 1_555 C NA NA . A NA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 A OE1 GLN 151 A GLN 151 1_555 D NA NA . A NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 B NA NA . A NA 155 1_555 E O HOH . A HOH 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3R2K _atom_sites.fract_transf_matrix[1][1] 0.005794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 155 1 NA NA . C 2 NA A 1 156 2 NA NA . D 2 NA A 1 157 3 NA NA . E 3 HOH A 1 158 158 HOH HOH . E 3 HOH A 2 159 159 HOH HOH . E 3 HOH A 3 160 160 HOH HOH . E 3 HOH A 4 161 161 HOH HOH . E 3 HOH A 5 162 162 HOH HOH . E 3 HOH A 6 163 163 HOH HOH . E 3 HOH A 7 164 164 HOH HOH . E 3 HOH A 8 165 1 HOH HOH . E 3 HOH A 9 166 2 HOH HOH . E 3 HOH A 10 167 3 HOH HOH . E 3 HOH A 11 168 4 HOH HOH . E 3 HOH A 12 169 5 HOH HOH . E 3 HOH A 13 170 6 HOH HOH . E 3 HOH A 14 171 7 HOH HOH . E 3 HOH A 15 172 8 HOH HOH . E 3 HOH A 16 173 9 HOH HOH . E 3 HOH A 17 174 10 HOH HOH . E 3 HOH A 18 175 11 HOH HOH . E 3 HOH A 19 176 12 HOH HOH . E 3 HOH A 20 177 13 HOH HOH . E 3 HOH A 21 178 14 HOH HOH . E 3 HOH A 22 179 15 HOH HOH . E 3 HOH A 23 180 16 HOH HOH . E 3 HOH A 24 181 17 HOH HOH . E 3 HOH A 25 182 18 HOH HOH . E 3 HOH A 26 183 19 HOH HOH . E 3 HOH A 27 184 20 HOH HOH . E 3 HOH A 28 185 21 HOH HOH . E 3 HOH A 29 186 22 HOH HOH . E 3 HOH A 30 187 23 HOH HOH . E 3 HOH A 31 188 24 HOH HOH . E 3 HOH A 32 189 25 HOH HOH . E 3 HOH A 33 190 26 HOH HOH . E 3 HOH A 34 191 27 HOH HOH . E 3 HOH A 35 192 28 HOH HOH . E 3 HOH A 36 193 29 HOH HOH . E 3 HOH A 37 194 30 HOH HOH . E 3 HOH A 38 195 31 HOH HOH . E 3 HOH A 39 196 32 HOH HOH . E 3 HOH A 40 197 33 HOH HOH . E 3 HOH A 41 198 34 HOH HOH . E 3 HOH A 42 199 35 HOH HOH . E 3 HOH A 43 200 36 HOH HOH . E 3 HOH A 44 201 37 HOH HOH . E 3 HOH A 45 202 38 HOH HOH . E 3 HOH A 46 203 39 HOH HOH . E 3 HOH A 47 204 40 HOH HOH . E 3 HOH A 48 205 41 HOH HOH . E 3 HOH A 49 206 42 HOH HOH . E 3 HOH A 50 207 43 HOH HOH . E 3 HOH A 51 208 44 HOH HOH . E 3 HOH A 52 209 45 HOH HOH . E 3 HOH A 53 210 46 HOH HOH . E 3 HOH A 54 211 47 HOH HOH . E 3 HOH A 55 212 48 HOH HOH . E 3 HOH A 56 213 49 HOH HOH . E 3 HOH A 57 214 50 HOH HOH . E 3 HOH A 58 215 51 HOH HOH . E 3 HOH A 59 216 52 HOH HOH . E 3 HOH A 60 217 53 HOH HOH . E 3 HOH A 61 218 54 HOH HOH . E 3 HOH A 62 219 55 HOH HOH . E 3 HOH A 63 220 56 HOH HOH . E 3 HOH A 64 221 57 HOH HOH . E 3 HOH A 65 222 58 HOH HOH . E 3 HOH A 66 223 59 HOH HOH . E 3 HOH A 67 224 60 HOH HOH . E 3 HOH A 68 225 61 HOH HOH . E 3 HOH A 69 226 62 HOH HOH . E 3 HOH A 70 227 63 HOH HOH . E 3 HOH A 71 228 64 HOH HOH . E 3 HOH A 72 229 65 HOH HOH . E 3 HOH A 73 230 66 HOH HOH . E 3 HOH A 74 231 67 HOH HOH . E 3 HOH A 75 232 68 HOH HOH . E 3 HOH A 76 233 69 HOH HOH . E 3 HOH A 77 234 70 HOH HOH . E 3 HOH A 78 235 71 HOH HOH . E 3 HOH A 79 236 72 HOH HOH . E 3 HOH A 80 237 73 HOH HOH . E 3 HOH A 81 238 74 HOH HOH . E 3 HOH A 82 239 75 HOH HOH . E 3 HOH A 83 240 76 HOH HOH . E 3 HOH A 84 241 77 HOH HOH . E 3 HOH A 85 242 78 HOH HOH . E 3 HOH A 86 243 79 HOH HOH . E 3 HOH A 87 244 80 HOH HOH . E 3 HOH A 88 245 81 HOH HOH . E 3 HOH A 89 246 82 HOH HOH . E 3 HOH A 90 247 83 HOH HOH . E 3 HOH A 91 248 84 HOH HOH . E 3 HOH A 92 249 85 HOH HOH . E 3 HOH A 93 250 86 HOH HOH . E 3 HOH A 94 251 87 HOH HOH . E 3 HOH A 95 252 88 HOH HOH . E 3 HOH A 96 253 89 HOH HOH . E 3 HOH A 97 254 90 HOH HOH . E 3 HOH A 98 255 91 HOH HOH . E 3 HOH A 99 256 92 HOH HOH . E 3 HOH A 100 257 93 HOH HOH . E 3 HOH A 101 258 94 HOH HOH . E 3 HOH A 102 259 95 HOH HOH . E 3 HOH A 103 260 96 HOH HOH . E 3 HOH A 104 261 97 HOH HOH . E 3 HOH A 105 262 98 HOH HOH . E 3 HOH A 106 263 99 HOH HOH . E 3 HOH A 107 264 100 HOH HOH . E 3 HOH A 108 265 101 HOH HOH . E 3 HOH A 109 266 102 HOH HOH . E 3 HOH A 110 267 103 HOH HOH . E 3 HOH A 111 268 104 HOH HOH . E 3 HOH A 112 269 105 HOH HOH . E 3 HOH A 113 270 106 HOH HOH . E 3 HOH A 114 271 107 HOH HOH . E 3 HOH A 115 272 108 HOH HOH . E 3 HOH A 116 273 109 HOH HOH . E 3 HOH A 117 274 110 HOH HOH . E 3 HOH A 118 275 111 HOH HOH . E 3 HOH A 119 276 112 HOH HOH . E 3 HOH A 120 277 113 HOH HOH . E 3 HOH A 121 278 114 HOH HOH . E 3 HOH A 122 279 115 HOH HOH . E 3 HOH A 123 280 116 HOH HOH . E 3 HOH A 124 281 117 HOH HOH . E 3 HOH A 125 282 118 HOH HOH . E 3 HOH A 126 283 119 HOH HOH . E 3 HOH A 127 284 120 HOH HOH . E 3 HOH A 128 285 121 HOH HOH . E 3 HOH A 129 286 122 HOH HOH . E 3 HOH A 130 287 123 HOH HOH . E 3 HOH A 131 288 124 HOH HOH . E 3 HOH A 132 289 125 HOH HOH . E 3 HOH A 133 290 126 HOH HOH . E 3 HOH A 134 291 127 HOH HOH . E 3 HOH A 135 292 128 HOH HOH . E 3 HOH A 136 293 129 HOH HOH . E 3 HOH A 137 294 130 HOH HOH . E 3 HOH A 138 295 131 HOH HOH . E 3 HOH A 139 296 132 HOH HOH . E 3 HOH A 140 297 133 HOH HOH . E 3 HOH A 141 298 134 HOH HOH . E 3 HOH A 142 299 135 HOH HOH . E 3 HOH A 143 300 136 HOH HOH . E 3 HOH A 144 301 137 HOH HOH . E 3 HOH A 145 302 138 HOH HOH . E 3 HOH A 146 303 139 HOH HOH . E 3 HOH A 147 304 140 HOH HOH . E 3 HOH A 148 305 141 HOH HOH . E 3 HOH A 149 306 142 HOH HOH . E 3 HOH A 150 307 143 HOH HOH . E 3 HOH A 151 308 144 HOH HOH . E 3 HOH A 152 309 145 HOH HOH . E 3 HOH A 153 310 146 HOH HOH . E 3 HOH A 154 311 147 HOH HOH . E 3 HOH A 155 312 148 HOH HOH . E 3 HOH A 156 313 149 HOH HOH . E 3 HOH A 157 314 150 HOH HOH . E 3 HOH A 158 315 151 HOH HOH . E 3 HOH A 159 316 152 HOH HOH . E 3 HOH A 160 317 153 HOH HOH . E 3 HOH A 161 318 154 HOH HOH . E 3 HOH A 162 319 155 HOH HOH . E 3 HOH A 163 320 156 HOH HOH . E 3 HOH A 164 321 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.826 _atom_site.Cartn_y -28.617 _atom_site.Cartn_z -35.441 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 155 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #