data_3R51 # _model_server_result.job_id iTkAyVozwro3X970Anq1Pg _model_server_result.datetime_utc '2024-10-10 06:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3R51 # _exptl.entry_id 3R51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R51 _cell.length_a 59.905 _cell.length_b 118.07 _cell.length_c 82.554 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 118.07 82.554 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 224 n n C1 O1 MMA sing 225 n n C1 O5 MMA sing 226 n n C1 H1 MMA sing 227 n n C2 C3 MMA sing 228 n n C2 O2 MMA sing 229 n n C2 H2 MMA sing 230 n n C3 C4 MMA sing 231 n n C3 O3 MMA sing 232 n n C3 H3 MMA sing 233 n n C4 C5 MMA sing 234 n n C4 O4 MMA sing 235 n n C4 H4 MMA sing 236 n n C5 C6 MMA sing 237 n n C5 O5 MMA sing 238 n n C5 H5 MMA sing 239 n n C6 O6 MMA sing 240 n n C6 H61 MMA sing 241 n n C6 H62 MMA sing 242 n n C7 O1 MMA sing 243 n n C7 H71 MMA sing 244 n n C7 H72 MMA sing 245 n n C7 H73 MMA sing 246 n n O2 HO2 MMA sing 247 n n O3 HO3 MMA sing 248 n n O4 HO4 MMA sing 249 n n O6 HO6 MMA sing 250 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 3R51 _atom_sites.fract_transf_matrix[1][1] 0.016693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MMA A 1 200 200 MMA MMA . D 3 HOH A 1 155 1 HOH HOH . D 3 HOH A 2 156 2 HOH HOH . D 3 HOH A 3 157 157 HOH HOH . D 3 HOH A 4 158 158 HOH HOH . D 3 HOH A 5 159 3 HOH HOH . D 3 HOH A 6 160 6 HOH HOH . D 3 HOH A 7 161 7 HOH HOH . D 3 HOH A 8 162 162 HOH HOH . D 3 HOH A 9 163 163 HOH HOH . D 3 HOH A 10 164 8 HOH HOH . D 3 HOH A 11 165 10 HOH HOH . D 3 HOH A 12 166 166 HOH HOH . D 3 HOH A 13 167 167 HOH HOH . D 3 HOH A 14 168 12 HOH HOH . D 3 HOH A 15 169 169 HOH HOH . D 3 HOH A 16 170 13 HOH HOH . D 3 HOH A 17 171 171 HOH HOH . D 3 HOH A 18 172 172 HOH HOH . D 3 HOH A 19 173 173 HOH HOH . D 3 HOH A 20 174 14 HOH HOH . D 3 HOH A 21 175 175 HOH HOH . D 3 HOH A 22 176 176 HOH HOH . D 3 HOH A 23 177 17 HOH HOH . D 3 HOH A 24 178 178 HOH HOH . D 3 HOH A 25 179 23 HOH HOH . D 3 HOH A 26 180 180 HOH HOH . D 3 HOH A 27 181 27 HOH HOH . D 3 HOH A 28 182 182 HOH HOH . D 3 HOH A 29 183 28 HOH HOH . D 3 HOH A 30 184 184 HOH HOH . D 3 HOH A 31 185 185 HOH HOH . D 3 HOH A 32 186 30 HOH HOH . D 3 HOH A 33 187 187 HOH HOH . D 3 HOH A 34 188 32 HOH HOH . D 3 HOH A 35 189 189 HOH HOH . D 3 HOH A 36 190 34 HOH HOH . D 3 HOH A 37 191 35 HOH HOH . D 3 HOH A 38 192 36 HOH HOH . D 3 HOH A 39 193 44 HOH HOH . D 3 HOH A 40 194 47 HOH HOH . D 3 HOH A 41 195 195 HOH HOH . D 3 HOH A 42 196 48 HOH HOH . D 3 HOH A 43 197 49 HOH HOH . D 3 HOH A 44 198 50 HOH HOH . D 3 HOH A 45 199 199 HOH HOH . D 3 HOH A 46 201 201 HOH HOH . D 3 HOH A 47 202 202 HOH HOH . D 3 HOH A 48 203 203 HOH HOH . D 3 HOH A 49 204 204 HOH HOH . D 3 HOH A 50 205 51 HOH HOH . D 3 HOH A 51 206 206 HOH HOH . D 3 HOH A 52 207 52 HOH HOH . D 3 HOH A 53 208 53 HOH HOH . D 3 HOH A 54 209 209 HOH HOH . D 3 HOH A 55 210 210 HOH HOH . D 3 HOH A 56 211 211 HOH HOH . D 3 HOH A 57 212 212 HOH HOH . D 3 HOH A 58 213 213 HOH HOH . D 3 HOH A 59 214 54 HOH HOH . D 3 HOH A 60 215 55 HOH HOH . D 3 HOH A 61 216 56 HOH HOH . D 3 HOH A 62 217 217 HOH HOH . D 3 HOH A 63 218 57 HOH HOH . D 3 HOH A 64 219 58 HOH HOH . D 3 HOH A 65 220 59 HOH HOH . D 3 HOH A 66 221 60 HOH HOH . D 3 HOH A 67 222 61 HOH HOH . D 3 HOH A 68 223 62 HOH HOH . D 3 HOH A 69 224 63 HOH HOH . D 3 HOH A 70 225 85 HOH HOH . D 3 HOH A 71 226 89 HOH HOH . D 3 HOH A 72 227 90 HOH HOH . D 3 HOH A 73 228 91 HOH HOH . D 3 HOH A 74 229 94 HOH HOH . D 3 HOH A 75 230 96 HOH HOH . D 3 HOH A 76 231 97 HOH HOH . D 3 HOH A 77 232 98 HOH HOH . D 3 HOH A 78 233 100 HOH HOH . D 3 HOH A 79 234 101 HOH HOH . D 3 HOH A 80 235 102 HOH HOH . D 3 HOH A 81 236 105 HOH HOH . D 3 HOH A 82 237 106 HOH HOH . D 3 HOH A 83 238 107 HOH HOH . D 3 HOH A 84 239 108 HOH HOH . D 3 HOH A 85 240 109 HOH HOH . D 3 HOH A 86 241 110 HOH HOH . D 3 HOH A 87 242 111 HOH HOH . D 3 HOH A 88 243 112 HOH HOH . D 3 HOH A 89 244 113 HOH HOH . D 3 HOH A 90 245 114 HOH HOH . D 3 HOH A 91 246 115 HOH HOH . D 3 HOH A 92 247 116 HOH HOH . D 3 HOH A 93 248 117 HOH HOH . D 3 HOH A 94 249 118 HOH HOH . D 3 HOH A 95 250 119 HOH HOH . D 3 HOH A 96 251 120 HOH HOH . D 3 HOH A 97 252 121 HOH HOH . D 3 HOH A 98 253 122 HOH HOH . D 3 HOH A 99 254 123 HOH HOH . D 3 HOH A 100 255 125 HOH HOH . D 3 HOH A 101 256 126 HOH HOH . D 3 HOH A 102 257 127 HOH HOH . D 3 HOH A 103 258 131 HOH HOH . D 3 HOH A 104 259 132 HOH HOH . D 3 HOH A 105 260 133 HOH HOH . D 3 HOH A 106 261 136 HOH HOH . D 3 HOH A 107 262 138 HOH HOH . D 3 HOH A 108 263 139 HOH HOH . D 3 HOH A 109 264 140 HOH HOH . D 3 HOH A 110 265 146 HOH HOH . D 3 HOH A 111 266 149 HOH HOH . E 3 HOH B 1 155 155 HOH HOH . E 3 HOH B 2 156 156 HOH HOH . E 3 HOH B 3 157 4 HOH HOH . E 3 HOH B 4 158 5 HOH HOH . E 3 HOH B 5 159 159 HOH HOH . E 3 HOH B 6 160 160 HOH HOH . E 3 HOH B 7 161 161 HOH HOH . E 3 HOH B 8 162 9 HOH HOH . E 3 HOH B 9 163 11 HOH HOH . E 3 HOH B 10 164 164 HOH HOH . E 3 HOH B 11 165 165 HOH HOH . E 3 HOH B 12 166 15 HOH HOH . E 3 HOH B 13 167 16 HOH HOH . E 3 HOH B 14 168 168 HOH HOH . E 3 HOH B 15 169 18 HOH HOH . E 3 HOH B 16 170 170 HOH HOH . E 3 HOH B 17 171 19 HOH HOH . E 3 HOH B 18 172 20 HOH HOH . E 3 HOH B 19 173 21 HOH HOH . E 3 HOH B 20 174 174 HOH HOH . E 3 HOH B 21 175 22 HOH HOH . E 3 HOH B 22 176 24 HOH HOH . E 3 HOH B 23 177 177 HOH HOH . E 3 HOH B 24 178 25 HOH HOH . E 3 HOH B 25 179 179 HOH HOH . E 3 HOH B 26 180 26 HOH HOH . E 3 HOH B 27 181 181 HOH HOH . E 3 HOH B 28 182 29 HOH HOH . E 3 HOH B 29 183 183 HOH HOH . E 3 HOH B 30 184 31 HOH HOH . E 3 HOH B 31 185 33 HOH HOH . E 3 HOH B 32 186 186 HOH HOH . E 3 HOH B 33 187 37 HOH HOH . E 3 HOH B 34 188 188 HOH HOH . E 3 HOH B 35 189 38 HOH HOH . E 3 HOH B 36 190 190 HOH HOH . E 3 HOH B 37 191 191 HOH HOH . E 3 HOH B 38 192 192 HOH HOH . E 3 HOH B 39 193 193 HOH HOH . E 3 HOH B 40 194 194 HOH HOH . E 3 HOH B 41 195 39 HOH HOH . E 3 HOH B 42 196 196 HOH HOH . E 3 HOH B 43 197 197 HOH HOH . E 3 HOH B 44 198 198 HOH HOH . E 3 HOH B 45 199 40 HOH HOH . E 3 HOH B 46 200 200 HOH HOH . E 3 HOH B 47 201 41 HOH HOH . E 3 HOH B 48 202 42 HOH HOH . E 3 HOH B 49 203 43 HOH HOH . E 3 HOH B 50 204 45 HOH HOH . E 3 HOH B 51 205 205 HOH HOH . E 3 HOH B 52 206 46 HOH HOH . E 3 HOH B 53 207 207 HOH HOH . E 3 HOH B 54 208 208 HOH HOH . E 3 HOH B 55 209 64 HOH HOH . E 3 HOH B 56 210 65 HOH HOH . E 3 HOH B 57 211 66 HOH HOH . E 3 HOH B 58 212 67 HOH HOH . E 3 HOH B 59 213 68 HOH HOH . E 3 HOH B 60 214 214 HOH HOH . E 3 HOH B 61 215 215 HOH HOH . E 3 HOH B 62 216 216 HOH HOH . E 3 HOH B 63 217 69 HOH HOH . E 3 HOH B 64 218 70 HOH HOH . E 3 HOH B 65 219 71 HOH HOH . E 3 HOH B 66 220 72 HOH HOH . E 3 HOH B 67 221 73 HOH HOH . E 3 HOH B 68 222 74 HOH HOH . E 3 HOH B 69 223 75 HOH HOH . E 3 HOH B 70 224 76 HOH HOH . E 3 HOH B 71 225 77 HOH HOH . E 3 HOH B 72 226 78 HOH HOH . E 3 HOH B 73 227 79 HOH HOH . E 3 HOH B 74 228 80 HOH HOH . E 3 HOH B 75 229 81 HOH HOH . E 3 HOH B 76 230 82 HOH HOH . E 3 HOH B 77 231 83 HOH HOH . E 3 HOH B 78 232 84 HOH HOH . E 3 HOH B 79 233 86 HOH HOH . E 3 HOH B 80 234 87 HOH HOH . E 3 HOH B 81 235 88 HOH HOH . E 3 HOH B 82 236 92 HOH HOH . E 3 HOH B 83 237 93 HOH HOH . E 3 HOH B 84 238 95 HOH HOH . E 3 HOH B 85 239 99 HOH HOH . E 3 HOH B 86 240 103 HOH HOH . E 3 HOH B 87 241 104 HOH HOH . E 3 HOH B 88 242 124 HOH HOH . E 3 HOH B 89 243 128 HOH HOH . E 3 HOH B 90 244 129 HOH HOH . E 3 HOH B 91 245 130 HOH HOH . E 3 HOH B 92 246 134 HOH HOH . E 3 HOH B 93 247 135 HOH HOH . E 3 HOH B 94 248 137 HOH HOH . E 3 HOH B 95 249 141 HOH HOH . E 3 HOH B 96 250 142 HOH HOH . E 3 HOH B 97 251 143 HOH HOH . E 3 HOH B 98 252 144 HOH HOH . E 3 HOH B 99 253 145 HOH HOH . E 3 HOH B 100 254 147 HOH HOH . E 3 HOH B 101 255 148 HOH HOH . E 3 HOH B 102 256 150 HOH HOH . E 3 HOH B 103 257 151 HOH HOH . E 3 HOH B 104 258 152 HOH HOH . E 3 HOH B 105 259 153 HOH HOH . E 3 HOH B 106 260 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . C 2 21.358 70.232 57.964 1 70.05 ? C1 MMA 200 A 1 HETATM 2 C C2 MMA . . . C 2 22.49 69.164 57.982 1 69.97 ? C2 MMA 200 A 1 HETATM 3 C C3 MMA . . . C 2 23.835 69.867 57.617 1 70.08 ? C3 MMA 200 A 1 HETATM 4 C C4 MMA . . . C 2 23.704 70.486 56.205 1 68.88 ? C4 MMA 200 A 1 HETATM 5 C C5 MMA . . . C 2 22.537 71.51 56.234 1 67.6 ? C5 MMA 200 A 1 HETATM 6 C C6 MMA . . . C 2 22.378 72.133 54.842 1 64.78 ? C6 MMA 200 A 1 HETATM 7 C C7 MMA . . . C 2 20.56 72.221 58.993 1 70.4 ? C7 MMA 200 A 1 HETATM 8 O O1 MMA . . . C 2 21.628 71.251 58.983 1 70.6 ? O1 MMA 200 A 1 HETATM 9 O O2 MMA . . . C 2 22.19 68.154 56.999 1 69.58 ? O2 MMA 200 A 1 HETATM 10 O O3 MMA . . . C 2 24.911 68.915 57.626 1 70.09 ? O3 MMA 200 A 1 HETATM 11 O O4 MMA . . . C 2 24.936 71.145 55.852 1 68.82 ? O4 MMA 200 A 1 HETATM 12 O O5 MMA . . . C 2 21.283 70.843 56.606 1 68.13 ? O5 MMA 200 A 1 HETATM 13 O O6 MMA . . . C 2 21.804 71.674 53.63 1 60.73 ? O6 MMA 200 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #