data_3R58 # _model_server_result.job_id SY_DyK6mgqQ4PnLUS66kBg _model_server_result.datetime_utc '2024-10-11 01:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":332}' # _entry.id 3R58 # _exptl.entry_id 3R58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.259 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R58 _cell.length_a 58.759 _cell.length_b 64.934 _cell.length_c 96.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H14 O3' _chem_comp.formula_weight 230.259 _chem_comp.id NPS _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAPROXEN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C15 NPS sing 326 n n C15 OXT NPS doub 327 n n C15 C14 NPS sing 328 n n C14 C10 NPS sing 329 n n C14 C8 NPS sing 330 n n C8 C7 NPS sing 331 n y C8 C11 NPS doub 332 n y C7 C4 NPS doub 333 n y C4 C3 NPS sing 334 n y C4 C5 NPS sing 335 n y C3 C2 NPS doub 336 n y C2 C1 NPS sing 337 n y C11 C13 NPS sing 338 n y C13 C5 NPS doub 339 n y C5 C6 NPS sing 340 n y C6 C1 NPS doub 341 n y C1 O2 NPS sing 342 n n O2 C12 NPS sing 343 n n O H NPS sing 344 n n C14 H14 NPS sing 345 n n C10 H101 NPS sing 346 n n C10 H102 NPS sing 347 n n C10 H103 NPS sing 348 n n C7 H7 NPS sing 349 n n C11 H11 NPS sing 350 n n C3 H3 NPS sing 351 n n C2 H2 NPS sing 352 n n C13 H13 NPS sing 353 n n C6 H6 NPS sing 354 n n C12 H121 NPS sing 355 n n C12 H122 NPS sing 356 n n C12 H123 NPS sing 357 n n # _atom_sites.entry_id 3R58 _atom_sites.fract_transf_matrix[1][1] 0.017019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 NPS A 1 332 1 NPS NPS . D 4 EDO A 1 333 1 EDO EDO . E 4 EDO A 1 334 2 EDO EDO . F 4 EDO A 1 335 3 EDO EDO . G 4 EDO A 1 336 4 EDO EDO . H 5 HOH A 1 337 1 HOH HOH . H 5 HOH A 2 338 2 HOH HOH . H 5 HOH A 3 339 3 HOH HOH . H 5 HOH A 4 340 4 HOH HOH . H 5 HOH A 5 341 5 HOH HOH . H 5 HOH A 6 342 6 HOH HOH . H 5 HOH A 7 343 7 HOH HOH . H 5 HOH A 8 344 9 HOH HOH . H 5 HOH A 9 345 10 HOH HOH . H 5 HOH A 10 346 11 HOH HOH . H 5 HOH A 11 347 12 HOH HOH . H 5 HOH A 12 348 13 HOH HOH . H 5 HOH A 13 349 14 HOH HOH . H 5 HOH A 14 350 15 HOH HOH . H 5 HOH A 15 351 16 HOH HOH . H 5 HOH A 16 352 17 HOH HOH . H 5 HOH A 17 353 18 HOH HOH . H 5 HOH A 18 354 19 HOH HOH . H 5 HOH A 19 355 20 HOH HOH . H 5 HOH A 20 356 21 HOH HOH . H 5 HOH A 21 357 22 HOH HOH . H 5 HOH A 22 358 23 HOH HOH . H 5 HOH A 23 359 24 HOH HOH . H 5 HOH A 24 360 25 HOH HOH . H 5 HOH A 25 361 26 HOH HOH . H 5 HOH A 26 362 27 HOH HOH . H 5 HOH A 27 363 28 HOH HOH . H 5 HOH A 28 364 29 HOH HOH . H 5 HOH A 29 365 30 HOH HOH . H 5 HOH A 30 366 31 HOH HOH . H 5 HOH A 31 367 32 HOH HOH . H 5 HOH A 32 368 33 HOH HOH . H 5 HOH A 33 369 34 HOH HOH . H 5 HOH A 34 370 35 HOH HOH . H 5 HOH A 35 371 36 HOH HOH . H 5 HOH A 36 372 37 HOH HOH . H 5 HOH A 37 373 38 HOH HOH . H 5 HOH A 38 374 39 HOH HOH . H 5 HOH A 39 375 40 HOH HOH . H 5 HOH A 40 376 41 HOH HOH . H 5 HOH A 41 377 42 HOH HOH . H 5 HOH A 42 378 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPS . . . C 3 -1.932 -9.91 -15.468 1 37.32 ? C1 NPS 332 A 1 HETATM 2 O O2 NPS . . . C 3 -1.96 -11.152 -15.968 1 36.78 ? O2 NPS 332 A 1 HETATM 3 C C2 NPS . . . C 3 -2.239 -9.891 -14.144 1 37.68 ? C2 NPS 332 A 1 HETATM 4 C C14 NPS . . . C 3 -1.672 -3.763 -12.99 1 48.13 ? C14 NPS 332 A 1 HETATM 5 C C3 NPS . . . C 3 -2.255 -8.709 -13.416 1 41.3 ? C3 NPS 332 A 1 HETATM 6 C C4 NPS . . . C 3 -1.968 -7.523 -13.988 1 41.99 ? C4 NPS 332 A 1 HETATM 7 C C5 NPS . . . C 3 -1.643 -7.54 -15.373 1 40.67 ? C5 NPS 332 A 1 HETATM 8 C C6 NPS . . . C 3 -1.627 -8.719 -16.148 1 38.36 ? C6 NPS 332 A 1 HETATM 9 C C7 NPS . . . C 3 -2.001 -6.359 -13.155 1 44.63 ? C7 NPS 332 A 1 HETATM 10 C C8 NPS . . . C 3 -1.707 -5.126 -13.769 1 44.42 ? C8 NPS 332 A 1 HETATM 11 C C10 NPS . . . C 3 -2.406 -2.594 -13.68 1 48.15 ? C10 NPS 332 A 1 HETATM 12 C C13 NPS . . . C 3 -1.365 -6.323 -15.94 1 38.74 ? C13 NPS 332 A 1 HETATM 13 C C11 NPS . . . C 3 -1.409 -5.162 -15.134 1 43.14 ? C11 NPS 332 A 1 HETATM 14 C C12 NPS . . . C 3 -1.913 -12.106 -14.821 1 32.81 ? C12 NPS 332 A 1 HETATM 15 O O NPS . . . C 3 0.043 -2.852 -11.623 1 50.23 ? O NPS 332 A 1 HETATM 16 O OXT NPS . . . C 3 0.648 -3.461 -13.662 1 46.1 ? OXT NPS 332 A 1 HETATM 17 C C15 NPS . . . C 3 -0.201 -3.335 -12.743 1 47.62 ? C15 NPS 332 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #