data_3R58
#
_model_server_result.job_id            VNHFaichph0OSc248M8Exw 
_model_server_result.datetime_utc      '2024-10-11 01:27:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":700}' 
#
_entry.id    3R58 
#
_exptl.entry_id    3R58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R58 
_cell.length_a            58.759 
_cell.length_b            64.934 
_cell.length_c            96.273 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 246 n n 
PA O2A NAP sing 247 n n 
PA O5B NAP sing 248 n n 
PA O3 NAP sing 249 n n 
O2A HOA2 NAP sing 250 n n 
O5B C5B NAP sing 251 n n 
C5B C4B NAP sing 252 n n 
C5B H51A NAP sing 253 n n 
C5B H52A NAP sing 254 n n 
C4B O4B NAP sing 255 n n 
C4B C3B NAP sing 256 n n 
C4B H4B NAP sing 257 n n 
O4B C1B NAP sing 258 n n 
C3B O3B NAP sing 259 n n 
C3B C2B NAP sing 260 n n 
C3B H3B NAP sing 261 n n 
O3B HO3A NAP sing 262 n n 
C2B O2B NAP sing 263 n n 
C2B C1B NAP sing 264 n n 
C2B H2B NAP sing 265 n n 
O2B P2B NAP sing 266 n n 
C1B N9A NAP sing 267 n n 
C1B H1B NAP sing 268 n n 
N9A C8A NAP sing 269 n y 
N9A C4A NAP sing 270 n y 
C8A N7A NAP doub 271 n y 
C8A H8A NAP sing 272 n n 
N7A C5A NAP sing 273 n y 
C5A C6A NAP sing 274 n y 
C5A C4A NAP doub 275 n y 
C6A N6A NAP sing 276 n n 
C6A N1A NAP doub 277 n y 
N6A H61A NAP sing 278 n n 
N6A H62A NAP sing 279 n n 
N1A C2A NAP sing 280 n y 
C2A N3A NAP doub 281 n y 
C2A H2A NAP sing 282 n n 
N3A C4A NAP sing 283 n y 
O3 PN NAP sing 284 n n 
PN O1N NAP doub 285 n n 
PN O2N NAP sing 286 n n 
PN O5D NAP sing 287 n n 
O5D C5D NAP sing 288 n n 
C5D C4D NAP sing 289 n n 
C5D H51N NAP sing 290 n n 
C5D H52N NAP sing 291 n n 
C4D O4D NAP sing 292 n n 
C4D C3D NAP sing 293 n n 
C4D H4D NAP sing 294 n n 
O4D C1D NAP sing 295 n n 
C3D O3D NAP sing 296 n n 
C3D C2D NAP sing 297 n n 
C3D H3D NAP sing 298 n n 
O3D HO3N NAP sing 299 n n 
C2D O2D NAP sing 300 n n 
C2D C1D NAP sing 301 n n 
C2D H2D NAP sing 302 n n 
O2D HO2N NAP sing 303 n n 
C1D N1N NAP sing 304 n n 
C1D H1D NAP sing 305 n n 
N1N C2N NAP sing 306 n y 
N1N C6N NAP doub 307 n y 
C2N C3N NAP doub 308 n y 
C2N H2N NAP sing 309 n n 
C3N C7N NAP sing 310 n n 
C3N C4N NAP sing 311 n y 
C7N O7N NAP doub 312 n n 
C7N N7N NAP sing 313 n n 
N7N H71N NAP sing 314 n n 
N7N H72N NAP sing 315 n n 
C4N C5N NAP doub 316 n y 
C4N H4N NAP sing 317 n n 
C5N C6N NAP sing 318 n y 
C5N H5N NAP sing 319 n n 
C6N H6N NAP sing 320 n n 
P2B O1X NAP doub 321 n n 
P2B O2X NAP sing 322 n n 
P2B O3X NAP sing 323 n n 
O2X HOP2 NAP sing 324 n n 
O3X HOP3 NAP sing 325 n n 
#
_atom_sites.entry_id                     3R58 
_atom_sites.fract_transf_matrix[1][1]    0.017019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 700 700 NAP NAP . 
C 3 NPS A 1 332 1 NPS NPS . 
D 4 EDO A 1 333 1 EDO EDO . 
E 4 EDO A 1 334 2 EDO EDO . 
F 4 EDO A 1 335 3 EDO EDO . 
G 4 EDO A 1 336 4 EDO EDO . 
H 5 HOH A 1 337 1 HOH HOH . 
H 5 HOH A 2 338 2 HOH HOH . 
H 5 HOH A 3 339 3 HOH HOH . 
H 5 HOH A 4 340 4 HOH HOH . 
H 5 HOH A 5 341 5 HOH HOH . 
H 5 HOH A 6 342 6 HOH HOH . 
H 5 HOH A 7 343 7 HOH HOH . 
H 5 HOH A 8 344 9 HOH HOH . 
H 5 HOH A 9 345 10 HOH HOH . 
H 5 HOH A 10 346 11 HOH HOH . 
H 5 HOH A 11 347 12 HOH HOH . 
H 5 HOH A 12 348 13 HOH HOH . 
H 5 HOH A 13 349 14 HOH HOH . 
H 5 HOH A 14 350 15 HOH HOH . 
H 5 HOH A 15 351 16 HOH HOH . 
H 5 HOH A 16 352 17 HOH HOH . 
H 5 HOH A 17 353 18 HOH HOH . 
H 5 HOH A 18 354 19 HOH HOH . 
H 5 HOH A 19 355 20 HOH HOH . 
H 5 HOH A 20 356 21 HOH HOH . 
H 5 HOH A 21 357 22 HOH HOH . 
H 5 HOH A 22 358 23 HOH HOH . 
H 5 HOH A 23 359 24 HOH HOH . 
H 5 HOH A 24 360 25 HOH HOH . 
H 5 HOH A 25 361 26 HOH HOH . 
H 5 HOH A 26 362 27 HOH HOH . 
H 5 HOH A 27 363 28 HOH HOH . 
H 5 HOH A 28 364 29 HOH HOH . 
H 5 HOH A 29 365 30 HOH HOH . 
H 5 HOH A 30 366 31 HOH HOH . 
H 5 HOH A 31 367 32 HOH HOH . 
H 5 HOH A 32 368 33 HOH HOH . 
H 5 HOH A 33 369 34 HOH HOH . 
H 5 HOH A 34 370 35 HOH HOH . 
H 5 HOH A 35 371 36 HOH HOH . 
H 5 HOH A 36 372 37 HOH HOH . 
H 5 HOH A 37 373 38 HOH HOH . 
H 5 HOH A 38 374 39 HOH HOH . 
H 5 HOH A 39 375 40 HOH HOH . 
H 5 HOH A 40 376 41 HOH HOH . 
H 5 HOH A 41 377 42 HOH HOH . 
H 5 HOH A 42 378 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 1.873 -3.735 -2.867 1 21.63 ? PA NAP 700 A 1 
HETATM 2 O O1A NAP . . . B 2 3.339 -3.471 -3.016 1 20.43 ? O1A NAP 700 A 1 
HETATM 3 O O2A NAP . . . B 2 1.468 -5.274 -2.733 1 17.31 ? O2A NAP 700 A 1 
HETATM 4 O O5B NAP . . . B 2 1.131 -2.933 -1.678 1 22.28 ? O5B NAP 700 A 1 
HETATM 5 C C5B NAP . . . B 2 -0.249 -3.025 -1.33 1 22.12 ? C5B NAP 700 A 1 
HETATM 6 C C4B NAP . . . B 2 -0.578 -2.028 -0.131 1 23.47 ? C4B NAP 700 A 1 
HETATM 7 O O4B NAP . . . B 2 0.41 -2.175 0.929 1 19.61 ? O4B NAP 700 A 1 
HETATM 8 C C3B NAP . . . B 2 -0.201 -0.674 -0.733 1 23.96 ? C3B NAP 700 A 1 
HETATM 9 O O3B NAP . . . B 2 -1.367 -0.128 -1.309 1 22.96 ? O3B NAP 700 A 1 
HETATM 10 C C2B NAP . . . B 2 0.33 0.143 0.465 1 22.56 ? C2B NAP 700 A 1 
HETATM 11 O O2B NAP . . . B 2 -0.689 0.986 0.956 1 19.16 ? O2B NAP 700 A 1 
HETATM 12 C C1B NAP . . . B 2 0.504 -0.905 1.592 1 22.88 ? C1B NAP 700 A 1 
HETATM 13 N N9A NAP . . . B 2 1.798 -0.812 2.301 1 23.82 ? N9A NAP 700 A 1 
HETATM 14 C C8A NAP . . . B 2 3.012 -0.47 1.821 1 22.2 ? C8A NAP 700 A 1 
HETATM 15 N N7A NAP . . . B 2 3.918 -0.54 2.788 1 21.89 ? N7A NAP 700 A 1 
HETATM 16 C C5A NAP . . . B 2 3.279 -0.91 3.883 1 24.17 ? C5A NAP 700 A 1 
HETATM 17 C C6A NAP . . . B 2 3.675 -1.074 5.197 1 23.47 ? C6A NAP 700 A 1 
HETATM 18 N N6A NAP . . . B 2 4.95 -0.897 5.567 1 25.37 ? N6A NAP 700 A 1 
HETATM 19 N N1A NAP . . . B 2 2.738 -1.424 6.089 1 25.58 ? N1A NAP 700 A 1 
HETATM 20 C C2A NAP . . . B 2 1.438 -1.592 5.77 1 26.12 ? C2A NAP 700 A 1 
HETATM 21 N N3A NAP . . . B 2 1.004 -1.413 4.515 1 28.82 ? N3A NAP 700 A 1 
HETATM 22 C C4A NAP . . . B 2 1.928 -1.08 3.573 1 26.27 ? C4A NAP 700 A 1 
HETATM 23 O O3 NAP . . . B 2 0.982 -3.096 -4.081 1 19.83 ? O3 NAP 700 A 1 
HETATM 24 P PN NAP . . . B 2 0.993 -3.301 -5.66 1 22.55 ? PN NAP 700 A 1 
HETATM 25 O O1N NAP . . . B 2 0.667 -2.001 -6.272 1 17.29 ? O1N NAP 700 A 1 
HETATM 26 O O2N NAP . . . B 2 0.108 -4.512 -5.958 1 22.69 ? O2N NAP 700 A 1 
HETATM 27 O O5D NAP . . . B 2 2.588 -3.841 -5.948 1 22.4 ? O5D NAP 700 A 1 
HETATM 28 C C5D NAP . . . B 2 3.63 -2.921 -6.1 1 25.28 ? C5D NAP 700 A 1 
HETATM 29 C C4D NAP . . . B 2 3.92 -2.529 -7.544 1 23.77 ? C4D NAP 700 A 1 
HETATM 30 O O4D NAP . . . B 2 4.21 -3.686 -8.46 1 22.79 ? O4D NAP 700 A 1 
HETATM 31 C C3D NAP . . . B 2 2.834 -1.79 -8.258 1 23.43 ? C3D NAP 700 A 1 
HETATM 32 O O3D NAP . . . B 2 2.705 -0.442 -7.751 1 25.12 ? O3D NAP 700 A 1 
HETATM 33 C C2D NAP . . . B 2 3.436 -1.773 -9.675 1 21.99 ? C2D NAP 700 A 1 
HETATM 34 O O2D NAP . . . B 2 4.598 -0.992 -9.608 1 22.18 ? O2D NAP 700 A 1 
HETATM 35 C C1D NAP . . . B 2 3.862 -3.245 -9.785 1 22.17 ? C1D NAP 700 A 1 
HETATM 36 N N1N NAP . . . B 2 2.784 -4.139 -10.25 1 18.93 ? N1N NAP 700 A 1 
HETATM 37 C C2N NAP . . . B 2 2.991 -4.693 -11.5 1 22.36 ? C2N NAP 700 A 1 
HETATM 38 C C3N NAP . . . B 2 2.074 -5.57 -12.072 1 25.78 ? C3N NAP 700 A 1 
HETATM 39 C C7N NAP . . . B 2 2.378 -6.159 -13.457 1 25.16 ? C7N NAP 700 A 1 
HETATM 40 O O7N NAP . . . B 2 1.418 -6.549 -14.136 1 23.52 ? O7N NAP 700 A 1 
HETATM 41 N N7N NAP . . . B 2 3.706 -6.174 -13.847 1 19.44 ? N7N NAP 700 A 1 
HETATM 42 C C4N NAP . . . B 2 0.878 -5.849 -11.391 1 25.29 ? C4N NAP 700 A 1 
HETATM 43 C C5N NAP . . . B 2 0.675 -5.271 -10.116 1 22.64 ? C5N NAP 700 A 1 
HETATM 44 C C6N NAP . . . B 2 1.632 -4.426 -9.534 1 21.37 ? C6N NAP 700 A 1 
HETATM 45 P P2B NAP . . . B 2 -0.388 2.595 1.15 1 26.45 ? P2B NAP 700 A 1 
HETATM 46 O O1X NAP . . . B 2 -0.089 3.303 -0.14 1 29.41 ? O1X NAP 700 A 1 
HETATM 47 O O2X NAP . . . B 2 -1.745 3.075 1.919 1 29.05 ? O2X NAP 700 A 1 
HETATM 48 O O3X NAP . . . B 2 0.897 2.598 2.056 1 28.12 ? O3X NAP 700 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           48 
#