data_3R5F
#
_model_server_result.job_id            aaF48E85ewWMOG4ER955KQ 
_model_server_result.datetime_utc      '2025-02-27 12:19:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":368}' 
#
_entry.id    3R5F 
#
_exptl.entry_id    3R5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R5F 
_cell.length_a            83.225 
_cell.length_b            83.225 
_cell.length_c            97.143 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 48.5715 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 319 A ASP 302 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc2 B O1A ATP . A ATP 368 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc3 B O3G ATP . A ATP 368 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc4 C MG MG . A MG 369 1_555 D O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3R5F 
_atom_sites.fract_transf_matrix[1][1]    0.012016 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010294 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 368 1 ATP ATP . 
C 3 MG A 1 369 1 MG MG . 
D 4 HOH A 1 370 1 HOH HOH . 
D 4 HOH A 2 371 2 HOH HOH . 
D 4 HOH A 3 372 3 HOH HOH . 
D 4 HOH A 4 373 4 HOH HOH . 
D 4 HOH A 5 374 5 HOH HOH . 
D 4 HOH A 6 375 6 HOH HOH . 
D 4 HOH A 7 376 7 HOH HOH . 
D 4 HOH A 8 377 8 HOH HOH . 
D 4 HOH A 9 378 9 HOH HOH . 
D 4 HOH A 10 379 10 HOH HOH . 
D 4 HOH A 11 380 11 HOH HOH . 
D 4 HOH A 12 381 12 HOH HOH . 
D 4 HOH A 13 382 13 HOH HOH . 
D 4 HOH A 14 383 14 HOH HOH . 
D 4 HOH A 15 384 15 HOH HOH . 
D 4 HOH A 16 385 16 HOH HOH . 
D 4 HOH A 17 386 17 HOH HOH . 
D 4 HOH A 18 387 18 HOH HOH . 
D 4 HOH A 19 388 19 HOH HOH . 
D 4 HOH A 20 389 20 HOH HOH . 
D 4 HOH A 21 390 21 HOH HOH . 
D 4 HOH A 22 391 22 HOH HOH . 
D 4 HOH A 23 392 23 HOH HOH . 
D 4 HOH A 24 393 24 HOH HOH . 
D 4 HOH A 25 394 25 HOH HOH . 
D 4 HOH A 26 395 26 HOH HOH . 
D 4 HOH A 27 396 27 HOH HOH . 
D 4 HOH A 28 397 28 HOH HOH . 
D 4 HOH A 29 398 29 HOH HOH . 
D 4 HOH A 30 399 30 HOH HOH . 
D 4 HOH A 31 400 31 HOH HOH . 
D 4 HOH A 32 401 32 HOH HOH . 
D 4 HOH A 33 402 33 HOH HOH . 
D 4 HOH A 34 403 34 HOH HOH . 
D 4 HOH A 35 404 35 HOH HOH . 
D 4 HOH A 36 405 36 HOH HOH . 
D 4 HOH A 37 406 37 HOH HOH . 
D 4 HOH A 38 407 38 HOH HOH . 
D 4 HOH A 39 408 39 HOH HOH . 
D 4 HOH A 40 409 40 HOH HOH . 
D 4 HOH A 41 410 41 HOH HOH . 
D 4 HOH A 42 411 42 HOH HOH . 
D 4 HOH A 43 412 43 HOH HOH . 
D 4 HOH A 44 413 44 HOH HOH . 
D 4 HOH A 45 414 45 HOH HOH . 
D 4 HOH A 46 415 46 HOH HOH . 
D 4 HOH A 47 416 47 HOH HOH . 
D 4 HOH A 48 417 48 HOH HOH . 
D 4 HOH A 49 418 49 HOH HOH . 
D 4 HOH A 50 419 50 HOH HOH . 
D 4 HOH A 51 420 51 HOH HOH . 
D 4 HOH A 52 421 52 HOH HOH . 
D 4 HOH A 53 422 53 HOH HOH . 
D 4 HOH A 54 423 54 HOH HOH . 
D 4 HOH A 55 424 55 HOH HOH . 
D 4 HOH A 56 425 56 HOH HOH . 
D 4 HOH A 57 426 57 HOH HOH . 
D 4 HOH A 58 427 58 HOH HOH . 
D 4 HOH A 59 428 59 HOH HOH . 
D 4 HOH A 60 429 60 HOH HOH . 
D 4 HOH A 61 430 61 HOH HOH . 
D 4 HOH A 62 431 62 HOH HOH . 
D 4 HOH A 63 432 63 HOH HOH . 
D 4 HOH A 64 433 64 HOH HOH . 
D 4 HOH A 65 434 65 HOH HOH . 
D 4 HOH A 66 435 66 HOH HOH . 
D 4 HOH A 67 436 67 HOH HOH . 
D 4 HOH A 68 437 68 HOH HOH . 
D 4 HOH A 69 438 69 HOH HOH . 
D 4 HOH A 70 439 70 HOH HOH . 
D 4 HOH A 71 440 71 HOH HOH . 
D 4 HOH A 72 441 72 HOH HOH . 
D 4 HOH A 73 442 73 HOH HOH . 
D 4 HOH A 74 443 74 HOH HOH . 
D 4 HOH A 75 444 75 HOH HOH . 
D 4 HOH A 76 445 76 HOH HOH . 
D 4 HOH A 77 446 77 HOH HOH . 
D 4 HOH A 78 447 78 HOH HOH . 
D 4 HOH A 79 448 79 HOH HOH . 
D 4 HOH A 80 449 80 HOH HOH . 
D 4 HOH A 81 450 81 HOH HOH . 
D 4 HOH A 82 451 82 HOH HOH . 
D 4 HOH A 83 452 83 HOH HOH . 
D 4 HOH A 84 453 84 HOH HOH . 
D 4 HOH A 85 454 85 HOH HOH . 
D 4 HOH A 86 455 86 HOH HOH . 
D 4 HOH A 87 456 87 HOH HOH . 
D 4 HOH A 88 457 88 HOH HOH . 
D 4 HOH A 89 458 89 HOH HOH . 
D 4 HOH A 90 459 90 HOH HOH . 
D 4 HOH A 91 460 91 HOH HOH . 
D 4 HOH A 92 461 92 HOH HOH . 
D 4 HOH A 93 462 93 HOH HOH . 
D 4 HOH A 94 463 94 HOH HOH . 
D 4 HOH A 95 464 95 HOH HOH . 
D 4 HOH A 96 465 96 HOH HOH . 
D 4 HOH A 97 466 97 HOH HOH . 
D 4 HOH A 98 467 98 HOH HOH . 
D 4 HOH A 99 468 99 HOH HOH . 
D 4 HOH A 100 469 100 HOH HOH . 
D 4 HOH A 101 470 101 HOH HOH . 
D 4 HOH A 102 471 102 HOH HOH . 
D 4 HOH A 103 472 103 HOH HOH . 
D 4 HOH A 104 473 104 HOH HOH . 
D 4 HOH A 105 474 105 HOH HOH . 
D 4 HOH A 106 475 106 HOH HOH . 
D 4 HOH A 107 476 107 HOH HOH . 
D 4 HOH A 108 477 108 HOH HOH . 
D 4 HOH A 109 478 109 HOH HOH . 
D 4 HOH A 110 479 110 HOH HOH . 
D 4 HOH A 111 480 111 HOH HOH . 
D 4 HOH A 112 481 112 HOH HOH . 
D 4 HOH A 113 482 113 HOH HOH . 
D 4 HOH A 114 483 114 HOH HOH . 
D 4 HOH A 115 484 115 HOH HOH . 
D 4 HOH A 116 485 116 HOH HOH . 
D 4 HOH A 117 486 117 HOH HOH . 
D 4 HOH A 118 487 118 HOH HOH . 
D 4 HOH A 119 488 119 HOH HOH . 
D 4 HOH A 120 489 120 HOH HOH . 
D 4 HOH A 121 490 121 HOH HOH . 
D 4 HOH A 122 491 122 HOH HOH . 
D 4 HOH A 123 492 123 HOH HOH . 
D 4 HOH A 124 493 124 HOH HOH . 
D 4 HOH A 125 494 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 10.685 16.697 15.369 1 77.68 ? PG ATP 368 A 1 
HETATM 2 O O1G ATP . . . B 2 11.38 17.915 14.778 1 75.01 ? O1G ATP 368 A 1 
HETATM 3 O O2G ATP . . . B 2 11.63 15.516 15.505 1 75.46 ? O2G ATP 368 A 1 
HETATM 4 O O3G ATP . . . B 2 9.775 16.938 16.58 1 75.11 ? O3G ATP 368 A 1 
HETATM 5 P PB ATP . . . B 2 8.49 15.22 14.508 1 73.9 ? PB ATP 368 A 1 
HETATM 6 O O1B ATP . . . B 2 8.296 15.018 16.003 1 73.76 ? O1B ATP 368 A 1 
HETATM 7 O O2B ATP . . . B 2 8.553 14.001 13.638 1 71.28 ? O2B ATP 368 A 1 
HETATM 8 O O3B ATP . . . B 2 9.663 16.274 14.207 1 73.39 ? O3B ATP 368 A 1 
HETATM 9 P PA ATP . . . B 2 6.64 17.414 14.647 1 63.88 ? PA ATP 368 A 1 
HETATM 10 O O1A ATP . . . B 2 7.467 18.001 15.774 1 66.54 ? O1A ATP 368 A 1 
HETATM 11 O O2A ATP . . . B 2 5.219 16.947 14.891 1 63.64 ? O2A ATP 368 A 1 
HETATM 12 O O3A ATP . . . B 2 7.277 16.114 13.919 1 69.86 ? O3A ATP 368 A 1 
HETATM 13 O O5' ATP . . . B 2 6.78 18.567 13.507 1 62.03 ? O5' ATP 368 A 1 
HETATM 14 C C5' ATP . . . B 2 8.025 19.224 13.238 1 55.79 ? C5' ATP 368 A 1 
HETATM 15 C C4' ATP . . . B 2 7.93 20.741 13.352 1 51.45 ? C4' ATP 368 A 1 
HETATM 16 O O4' ATP . . . B 2 7.029 21.242 12.361 1 49.04 ? O4' ATP 368 A 1 
HETATM 17 C C3' ATP . . . B 2 7.384 21.302 14.681 1 50.29 ? C3' ATP 368 A 1 
HETATM 18 O O3' ATP . . . B 2 8.387 21.611 15.638 1 52.03 ? O3' ATP 368 A 1 
HETATM 19 C C2' ATP . . . B 2 6.82 22.63 14.248 1 48.36 ? C2' ATP 368 A 1 
HETATM 20 O O2' ATP . . . B 2 7.915 23.522 13.98 1 53.35 ? O2' ATP 368 A 1 
HETATM 21 C C1' ATP . . . B 2 6.257 22.331 12.893 1 42.96 ? C1' ATP 368 A 1 
HETATM 22 N N9 ATP . . . B 2 4.853 21.905 13.042 1 36.11 ? N9 ATP 368 A 1 
HETATM 23 C C8 ATP . . . B 2 4.408 20.64 13.09 1 31.79 ? C8 ATP 368 A 1 
HETATM 24 N N7 ATP . . . B 2 3.053 20.643 13.178 1 32.84 ? N7 ATP 368 A 1 
HETATM 25 C C5 ATP . . . B 2 2.617 21.905 13.242 1 34.83 ? C5 ATP 368 A 1 
HETATM 26 C C6 ATP . . . B 2 1.291 22.594 13.361 1 32.24 ? C6 ATP 368 A 1 
HETATM 27 N N6 ATP . . . B 2 0.109 21.882 13.45 1 32.19 ? N6 ATP 368 A 1 
HETATM 28 N N1 ATP . . . B 2 1.342 23.951 13.374 1 29.98 ? N1 ATP 368 A 1 
HETATM 29 C C2 ATP . . . B 2 2.48 24.673 13.282 1 33.66 ? C2 ATP 368 A 1 
HETATM 30 N N3 ATP . . . B 2 3.697 24.106 13.177 1 33.93 ? N3 ATP 368 A 1 
HETATM 31 C C4 ATP . . . B 2 3.824 22.747 13.151 1 35.05 ? C4 ATP 368 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#