data_3R5F # _model_server_result.job_id D3QiuEC5UwTmBj74wGfEuw _model_server_result.datetime_utc '2025-02-18 09:56:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":369}' # _entry.id 3R5F # _exptl.entry_id 3R5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R5F _cell.length_a 83.225 _cell.length_b 83.225 _cell.length_c 97.143 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 48.5715 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 319 A ASP 302 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 B O1A ATP . A ATP 368 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc3 B O3G ATP . A ATP 368 1_555 C MG MG . A MG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc4 C MG MG . A MG 369 1_555 D O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3R5F _atom_sites.fract_transf_matrix[1][1] 0.012016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 368 1 ATP ATP . C 3 MG A 1 369 1 MG MG . D 4 HOH A 1 370 1 HOH HOH . D 4 HOH A 2 371 2 HOH HOH . D 4 HOH A 3 372 3 HOH HOH . D 4 HOH A 4 373 4 HOH HOH . D 4 HOH A 5 374 5 HOH HOH . D 4 HOH A 6 375 6 HOH HOH . D 4 HOH A 7 376 7 HOH HOH . D 4 HOH A 8 377 8 HOH HOH . D 4 HOH A 9 378 9 HOH HOH . D 4 HOH A 10 379 10 HOH HOH . D 4 HOH A 11 380 11 HOH HOH . D 4 HOH A 12 381 12 HOH HOH . D 4 HOH A 13 382 13 HOH HOH . D 4 HOH A 14 383 14 HOH HOH . D 4 HOH A 15 384 15 HOH HOH . D 4 HOH A 16 385 16 HOH HOH . D 4 HOH A 17 386 17 HOH HOH . D 4 HOH A 18 387 18 HOH HOH . D 4 HOH A 19 388 19 HOH HOH . D 4 HOH A 20 389 20 HOH HOH . D 4 HOH A 21 390 21 HOH HOH . D 4 HOH A 22 391 22 HOH HOH . D 4 HOH A 23 392 23 HOH HOH . D 4 HOH A 24 393 24 HOH HOH . D 4 HOH A 25 394 25 HOH HOH . D 4 HOH A 26 395 26 HOH HOH . D 4 HOH A 27 396 27 HOH HOH . D 4 HOH A 28 397 28 HOH HOH . D 4 HOH A 29 398 29 HOH HOH . D 4 HOH A 30 399 30 HOH HOH . D 4 HOH A 31 400 31 HOH HOH . D 4 HOH A 32 401 32 HOH HOH . D 4 HOH A 33 402 33 HOH HOH . D 4 HOH A 34 403 34 HOH HOH . D 4 HOH A 35 404 35 HOH HOH . D 4 HOH A 36 405 36 HOH HOH . D 4 HOH A 37 406 37 HOH HOH . D 4 HOH A 38 407 38 HOH HOH . D 4 HOH A 39 408 39 HOH HOH . D 4 HOH A 40 409 40 HOH HOH . D 4 HOH A 41 410 41 HOH HOH . D 4 HOH A 42 411 42 HOH HOH . D 4 HOH A 43 412 43 HOH HOH . D 4 HOH A 44 413 44 HOH HOH . D 4 HOH A 45 414 45 HOH HOH . D 4 HOH A 46 415 46 HOH HOH . D 4 HOH A 47 416 47 HOH HOH . D 4 HOH A 48 417 48 HOH HOH . D 4 HOH A 49 418 49 HOH HOH . D 4 HOH A 50 419 50 HOH HOH . D 4 HOH A 51 420 51 HOH HOH . D 4 HOH A 52 421 52 HOH HOH . D 4 HOH A 53 422 53 HOH HOH . D 4 HOH A 54 423 54 HOH HOH . D 4 HOH A 55 424 55 HOH HOH . D 4 HOH A 56 425 56 HOH HOH . D 4 HOH A 57 426 57 HOH HOH . D 4 HOH A 58 427 58 HOH HOH . D 4 HOH A 59 428 59 HOH HOH . D 4 HOH A 60 429 60 HOH HOH . D 4 HOH A 61 430 61 HOH HOH . D 4 HOH A 62 431 62 HOH HOH . D 4 HOH A 63 432 63 HOH HOH . D 4 HOH A 64 433 64 HOH HOH . D 4 HOH A 65 434 65 HOH HOH . D 4 HOH A 66 435 66 HOH HOH . D 4 HOH A 67 436 67 HOH HOH . D 4 HOH A 68 437 68 HOH HOH . D 4 HOH A 69 438 69 HOH HOH . D 4 HOH A 70 439 70 HOH HOH . D 4 HOH A 71 440 71 HOH HOH . D 4 HOH A 72 441 72 HOH HOH . D 4 HOH A 73 442 73 HOH HOH . D 4 HOH A 74 443 74 HOH HOH . D 4 HOH A 75 444 75 HOH HOH . D 4 HOH A 76 445 76 HOH HOH . D 4 HOH A 77 446 77 HOH HOH . D 4 HOH A 78 447 78 HOH HOH . D 4 HOH A 79 448 79 HOH HOH . D 4 HOH A 80 449 80 HOH HOH . D 4 HOH A 81 450 81 HOH HOH . D 4 HOH A 82 451 82 HOH HOH . D 4 HOH A 83 452 83 HOH HOH . D 4 HOH A 84 453 84 HOH HOH . D 4 HOH A 85 454 85 HOH HOH . D 4 HOH A 86 455 86 HOH HOH . D 4 HOH A 87 456 87 HOH HOH . D 4 HOH A 88 457 88 HOH HOH . D 4 HOH A 89 458 89 HOH HOH . D 4 HOH A 90 459 90 HOH HOH . D 4 HOH A 91 460 91 HOH HOH . D 4 HOH A 92 461 92 HOH HOH . D 4 HOH A 93 462 93 HOH HOH . D 4 HOH A 94 463 94 HOH HOH . D 4 HOH A 95 464 95 HOH HOH . D 4 HOH A 96 465 96 HOH HOH . D 4 HOH A 97 466 97 HOH HOH . D 4 HOH A 98 467 98 HOH HOH . D 4 HOH A 99 468 99 HOH HOH . D 4 HOH A 100 469 100 HOH HOH . D 4 HOH A 101 470 101 HOH HOH . D 4 HOH A 102 471 102 HOH HOH . D 4 HOH A 103 472 103 HOH HOH . D 4 HOH A 104 473 104 HOH HOH . D 4 HOH A 105 474 105 HOH HOH . D 4 HOH A 106 475 106 HOH HOH . D 4 HOH A 107 476 107 HOH HOH . D 4 HOH A 108 477 108 HOH HOH . D 4 HOH A 109 478 109 HOH HOH . D 4 HOH A 110 479 110 HOH HOH . D 4 HOH A 111 480 111 HOH HOH . D 4 HOH A 112 481 112 HOH HOH . D 4 HOH A 113 482 113 HOH HOH . D 4 HOH A 114 483 114 HOH HOH . D 4 HOH A 115 484 115 HOH HOH . D 4 HOH A 116 485 116 HOH HOH . D 4 HOH A 117 486 117 HOH HOH . D 4 HOH A 118 487 118 HOH HOH . D 4 HOH A 119 488 119 HOH HOH . D 4 HOH A 120 489 120 HOH HOH . D 4 HOH A 121 490 121 HOH HOH . D 4 HOH A 122 491 122 HOH HOH . D 4 HOH A 123 492 123 HOH HOH . D 4 HOH A 124 493 124 HOH HOH . D 4 HOH A 125 494 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.934 _atom_site.Cartn_y 18.044 _atom_site.Cartn_z 18.503 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 369 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1051 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 1 #