data_3R5K # _model_server_result.job_id CBLtskd80PBmzuRu7vXABw _model_server_result.datetime_utc '2024-11-22 19:35:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":7}' # _entry.id 3R5K # _exptl.entry_id 3R5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R5K _cell.length_a 89.85 _cell.length_b 89.85 _cell.length_c 185.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 3R5K _atom_sites.fract_transf_matrix[1][1] 0.01113 _atom_sites.fract_transf_matrix[1][2] 0.006426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 312 1 FMT FMT . D 2 FMT A 1 313 6 FMT FMT . E 2 FMT B 1 2 2 FMT FMT . F 2 FMT B 1 4 4 FMT FMT . G 2 FMT B 1 5 5 FMT FMT . H 2 FMT B 1 7 7 FMT FMT . I 3 HOH A 1 314 2 HOH HOH . I 3 HOH A 2 315 5 HOH HOH . I 3 HOH A 3 316 11 HOH HOH . I 3 HOH A 4 317 16 HOH HOH . I 3 HOH A 5 318 17 HOH HOH . I 3 HOH A 6 319 20 HOH HOH . I 3 HOH A 7 320 21 HOH HOH . I 3 HOH A 8 321 23 HOH HOH . I 3 HOH A 9 322 25 HOH HOH . I 3 HOH A 10 323 26 HOH HOH . I 3 HOH A 11 324 27 HOH HOH . I 3 HOH A 12 325 30 HOH HOH . I 3 HOH A 13 326 32 HOH HOH . I 3 HOH A 14 327 33 HOH HOH . I 3 HOH A 15 328 36 HOH HOH . I 3 HOH A 16 329 39 HOH HOH . I 3 HOH A 17 330 40 HOH HOH . I 3 HOH A 18 331 44 HOH HOH . I 3 HOH A 19 332 47 HOH HOH . I 3 HOH A 20 333 51 HOH HOH . I 3 HOH A 21 334 52 HOH HOH . I 3 HOH A 22 335 53 HOH HOH . I 3 HOH A 23 336 55 HOH HOH . I 3 HOH A 24 337 56 HOH HOH . I 3 HOH A 25 338 58 HOH HOH . I 3 HOH A 26 339 59 HOH HOH . I 3 HOH A 27 340 61 HOH HOH . I 3 HOH A 28 341 65 HOH HOH . I 3 HOH A 29 342 67 HOH HOH . I 3 HOH A 30 343 68 HOH HOH . I 3 HOH A 31 344 69 HOH HOH . I 3 HOH A 32 345 70 HOH HOH . I 3 HOH A 33 346 71 HOH HOH . I 3 HOH A 34 347 72 HOH HOH . I 3 HOH A 35 348 73 HOH HOH . I 3 HOH A 36 349 75 HOH HOH . I 3 HOH A 37 350 76 HOH HOH . I 3 HOH A 38 351 77 HOH HOH . I 3 HOH A 39 352 78 HOH HOH . I 3 HOH A 40 353 79 HOH HOH . I 3 HOH A 41 354 90 HOH HOH . I 3 HOH A 42 355 91 HOH HOH . I 3 HOH A 43 356 92 HOH HOH . I 3 HOH A 44 357 94 HOH HOH . I 3 HOH A 45 358 96 HOH HOH . I 3 HOH A 46 359 97 HOH HOH . I 3 HOH A 47 360 98 HOH HOH . I 3 HOH A 48 361 99 HOH HOH . I 3 HOH A 49 362 101 HOH HOH . I 3 HOH A 50 363 114 HOH HOH . I 3 HOH A 51 364 115 HOH HOH . I 3 HOH A 52 365 116 HOH HOH . I 3 HOH A 53 366 120 HOH HOH . J 3 HOH B 1 1 1 HOH HOH . J 3 HOH B 2 9 9 HOH HOH . J 3 HOH B 3 12 12 HOH HOH . J 3 HOH B 4 13 13 HOH HOH . J 3 HOH B 5 14 14 HOH HOH . J 3 HOH B 6 18 18 HOH HOH . J 3 HOH B 7 19 19 HOH HOH . J 3 HOH B 8 22 22 HOH HOH . J 3 HOH B 9 24 24 HOH HOH . J 3 HOH B 10 28 28 HOH HOH . J 3 HOH B 11 29 29 HOH HOH . J 3 HOH B 12 31 31 HOH HOH . J 3 HOH B 13 35 35 HOH HOH . J 3 HOH B 14 38 38 HOH HOH . J 3 HOH B 15 41 41 HOH HOH . J 3 HOH B 16 42 42 HOH HOH . J 3 HOH B 17 45 45 HOH HOH . J 3 HOH B 18 46 46 HOH HOH . J 3 HOH B 19 48 48 HOH HOH . J 3 HOH B 20 49 49 HOH HOH . J 3 HOH B 21 50 50 HOH HOH . J 3 HOH B 22 54 54 HOH HOH . J 3 HOH B 23 57 57 HOH HOH . J 3 HOH B 24 60 60 HOH HOH . J 3 HOH B 25 63 63 HOH HOH . J 3 HOH B 26 74 74 HOH HOH . J 3 HOH B 27 80 80 HOH HOH . J 3 HOH B 28 81 81 HOH HOH . J 3 HOH B 29 82 82 HOH HOH . J 3 HOH B 30 83 83 HOH HOH . J 3 HOH B 31 84 84 HOH HOH . J 3 HOH B 32 85 85 HOH HOH . J 3 HOH B 33 87 87 HOH HOH . J 3 HOH B 34 88 88 HOH HOH . J 3 HOH B 35 89 89 HOH HOH . J 3 HOH B 36 100 100 HOH HOH . J 3 HOH B 37 102 102 HOH HOH . J 3 HOH B 38 103 103 HOH HOH . J 3 HOH B 39 104 104 HOH HOH . J 3 HOH B 40 105 105 HOH HOH . J 3 HOH B 41 106 106 HOH HOH . J 3 HOH B 42 107 107 HOH HOH . J 3 HOH B 43 108 108 HOH HOH . J 3 HOH B 44 109 109 HOH HOH . J 3 HOH B 45 110 110 HOH HOH . J 3 HOH B 46 111 111 HOH HOH . J 3 HOH B 47 112 112 HOH HOH . J 3 HOH B 48 117 117 HOH HOH . J 3 HOH B 49 118 118 HOH HOH . J 3 HOH B 50 119 119 HOH HOH . J 3 HOH B 51 612 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 2 26.594 0.609 13.29 1 67.44 ? C FMT 7 B 1 HETATM 2 O O1 FMT . . . H 2 27.169 0.936 12.232 1 69.44 ? O1 FMT 7 B 1 HETATM 3 O O2 FMT . . . H 2 26.593 -0.599 13.611 1 66.2 ? O2 FMT 7 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #