data_3R5M # _model_server_result.job_id 7itldHF1Pd2QWu991nVPuA _model_server_result.datetime_utc '2024-11-22 23:16:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3R5M # _exptl.entry_id 3R5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R5M _cell.length_a 65.95 _cell.length_b 65.83 _cell.length_c 110.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C18 H18 O2' _chem_comp.formula_weight 266.334 _chem_comp.id MLO _chem_comp.mon_nstd_flag . _chem_comp.name "5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms magnolol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAE MLO doub 237 n n CAA HAA MLO sing 238 n n CAA HAAA MLO sing 239 n n CAB CAF MLO doub 240 n n CAB HAB MLO sing 241 n n CAB HABA MLO sing 242 n n OAC CAO MLO sing 243 n n OAC HOAC MLO sing 244 n n OAD CAP MLO sing 245 n n OAD HOAD MLO sing 246 n n CAM CAE MLO sing 247 n n CAE HAE MLO sing 248 n n CAF CAN MLO sing 249 n n CAF HAF MLO sing 250 n n CAO CAG MLO doub 251 n y CAG CAI MLO sing 252 n y CAG HAG MLO sing 253 n n CAJ CAH MLO doub 254 n y CAH CAP MLO sing 255 n y CAH HAH MLO sing 256 n n CAQ CAI MLO doub 257 n y CAI HAI MLO sing 258 n n CAJ CAR MLO sing 259 n y CAJ HAJ MLO sing 260 n n CAS CAK MLO doub 261 n y CAK CAQ MLO sing 262 n y CAK HAK MLO sing 263 n n CAR CAL MLO doub 264 n y CAL CAT MLO sing 265 n y CAL HAL MLO sing 266 n n CAQ CAM MLO sing 267 n n CAM HAM MLO sing 268 n n CAM HAMA MLO sing 269 n n CAN CAR MLO sing 270 n n CAN HAN MLO sing 271 n n CAN HANA MLO sing 272 n n CAS CAO MLO sing 273 n y CAP CAT MLO doub 274 n y CAT CAS MLO sing 275 n y # _atom_sites.entry_id 3R5M _atom_sites.fract_transf_matrix[1][1] 0.015163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MLO A 1 1 1 MLO MLO . F 3 MLO C 1 1 1 MLO MLO . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 7 7 HOH HOH . G 4 HOH A 5 10 10 HOH HOH . G 4 HOH A 6 12 12 HOH HOH . G 4 HOH A 7 17 17 HOH HOH . G 4 HOH A 8 18 18 HOH HOH . G 4 HOH A 9 22 22 HOH HOH . G 4 HOH A 10 23 23 HOH HOH . G 4 HOH A 11 25 25 HOH HOH . G 4 HOH A 12 28 28 HOH HOH . G 4 HOH A 13 29 29 HOH HOH . G 4 HOH A 14 32 32 HOH HOH . G 4 HOH A 15 35 35 HOH HOH . G 4 HOH A 16 38 38 HOH HOH . G 4 HOH A 17 41 41 HOH HOH . G 4 HOH A 18 42 42 HOH HOH . G 4 HOH A 19 43 43 HOH HOH . G 4 HOH A 20 46 46 HOH HOH . G 4 HOH A 21 48 48 HOH HOH . G 4 HOH A 22 49 49 HOH HOH . G 4 HOH A 23 51 51 HOH HOH . G 4 HOH A 24 52 52 HOH HOH . G 4 HOH A 25 54 54 HOH HOH . G 4 HOH A 26 56 56 HOH HOH . G 4 HOH A 27 59 59 HOH HOH . G 4 HOH A 28 62 62 HOH HOH . G 4 HOH A 29 63 63 HOH HOH . G 4 HOH A 30 64 64 HOH HOH . G 4 HOH A 31 67 67 HOH HOH . G 4 HOH A 32 68 68 HOH HOH . G 4 HOH A 33 463 1 HOH HOH . H 4 HOH B 1 37 37 HOH HOH . H 4 HOH B 2 39 39 HOH HOH . I 4 HOH C 1 4 4 HOH HOH . I 4 HOH C 2 6 6 HOH HOH . I 4 HOH C 3 8 8 HOH HOH . I 4 HOH C 4 9 9 HOH HOH . I 4 HOH C 5 11 11 HOH HOH . I 4 HOH C 6 13 13 HOH HOH . I 4 HOH C 7 14 14 HOH HOH . I 4 HOH C 8 15 15 HOH HOH . I 4 HOH C 9 16 16 HOH HOH . I 4 HOH C 10 19 19 HOH HOH . I 4 HOH C 11 20 20 HOH HOH . I 4 HOH C 12 21 21 HOH HOH . I 4 HOH C 13 24 24 HOH HOH . I 4 HOH C 14 26 26 HOH HOH . I 4 HOH C 15 27 27 HOH HOH . I 4 HOH C 16 30 30 HOH HOH . I 4 HOH C 17 31 31 HOH HOH . I 4 HOH C 18 33 33 HOH HOH . I 4 HOH C 19 34 34 HOH HOH . I 4 HOH C 20 36 36 HOH HOH . I 4 HOH C 21 44 44 HOH HOH . I 4 HOH C 22 45 45 HOH HOH . I 4 HOH C 23 50 50 HOH HOH . I 4 HOH C 24 53 53 HOH HOH . I 4 HOH C 25 55 55 HOH HOH . I 4 HOH C 26 57 57 HOH HOH . I 4 HOH C 27 58 58 HOH HOH . I 4 HOH C 28 61 61 HOH HOH . I 4 HOH C 29 65 65 HOH HOH . J 4 HOH D 1 40 40 HOH HOH . J 4 HOH D 2 47 47 HOH HOH . J 4 HOH D 3 60 60 HOH HOH . J 4 HOH D 4 66 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA MLO . . . F 3 36.167 41.146 11.403 1 83.94 ? CAA MLO 1 C 1 HETATM 2 C CAB MLO . . . F 3 33.401 34.953 6.886 1 83.9 ? CAB MLO 1 C 1 HETATM 3 O OAC MLO . . . F 3 33.547 34.008 13.248 1 83.93 ? OAC MLO 1 C 1 HETATM 4 O OAD MLO . . . F 3 36.662 33.091 12.802 1 84.63 ? OAD MLO 1 C 1 HETATM 5 C CAE MLO . . . F 3 35.468 39.859 11.702 1 84.43 ? CAE MLO 1 C 1 HETATM 6 C CAF MLO . . . F 3 34.568 34.197 6.939 1 84.04 ? CAF MLO 1 C 1 HETATM 7 C CAG MLO . . . F 3 33.99 36.26 13.812 1 84.31 ? CAG MLO 1 C 1 HETATM 8 C CAH MLO . . . F 3 36.415 31.969 10.724 1 84.41 ? CAH MLO 1 C 1 HETATM 9 C CAI MLO . . . F 3 34.661 37.459 13.587 1 84.44 ? CAI MLO 1 C 1 HETATM 10 C CAJ MLO . . . F 3 35.898 31.928 9.428 1 84.51 ? CAJ MLO 1 C 1 HETATM 11 C CAK MLO . . . F 3 35.796 36.451 11.717 1 84.46 ? CAK MLO 1 C 1 HETATM 12 C CAL MLO . . . F 3 34.864 34.093 9.795 1 84.95 ? CAL MLO 1 C 1 HETATM 13 C CAM MLO . . . F 3 36.317 38.879 12.284 1 84.29 ? CAM MLO 1 C 1 HETATM 14 C CAN MLO . . . F 3 34.56 32.936 7.529 1 84.42 ? CAN MLO 1 C 1 HETATM 15 C CAO MLO . . . F 3 34.22 35.157 12.994 1 84.11 ? CAO MLO 1 C 1 HETATM 16 C CAP MLO . . . F 3 36.153 33.067 11.549 1 84.47 ? CAP MLO 1 C 1 HETATM 17 C CAQ MLO . . . F 3 35.566 37.56 12.533 1 84.27 ? CAQ MLO 1 C 1 HETATM 18 C CAR MLO . . . F 3 35.123 32.993 8.96 1 84.85 ? CAR MLO 1 C 1 HETATM 19 C CAS MLO . . . F 3 35.126 35.241 11.933 1 84.46 ? CAS MLO 1 C 1 HETATM 20 C CAT MLO . . . F 3 35.377 34.14 11.097 1 84.63 ? CAT MLO 1 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #