data_3R5N # _model_server_result.job_id 4pT30kOAwg72vFcUdHrgmg _model_server_result.datetime_utc '2024-12-05 14:20:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3R5N # _exptl.entry_id 3R5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R5N _cell.length_a 66.04 _cell.length_b 66.04 _cell.length_c 155.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C18 H18 O2' _chem_comp.formula_weight 266.334 _chem_comp.id MLO _chem_comp.mon_nstd_flag . _chem_comp.name "5,5'-di(prop-2-en-1-yl)biphenyl-2,2'-diol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms magnolol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAE MLO doub 237 n n CAA HAA MLO sing 238 n n CAA HAAA MLO sing 239 n n CAB CAF MLO doub 240 n n CAB HAB MLO sing 241 n n CAB HABA MLO sing 242 n n OAC CAO MLO sing 243 n n OAC HOAC MLO sing 244 n n OAD CAP MLO sing 245 n n OAD HOAD MLO sing 246 n n CAM CAE MLO sing 247 n n CAE HAE MLO sing 248 n n CAF CAN MLO sing 249 n n CAF HAF MLO sing 250 n n CAO CAG MLO doub 251 n y CAG CAI MLO sing 252 n y CAG HAG MLO sing 253 n n CAJ CAH MLO doub 254 n y CAH CAP MLO sing 255 n y CAH HAH MLO sing 256 n n CAQ CAI MLO doub 257 n y CAI HAI MLO sing 258 n n CAJ CAR MLO sing 259 n y CAJ HAJ MLO sing 260 n n CAS CAK MLO doub 261 n y CAK CAQ MLO sing 262 n y CAK HAK MLO sing 263 n n CAR CAL MLO doub 264 n y CAL CAT MLO sing 265 n y CAL HAL MLO sing 266 n n CAQ CAM MLO sing 267 n n CAM HAM MLO sing 268 n n CAM HAMA MLO sing 269 n n CAN CAR MLO sing 270 n n CAN HAN MLO sing 271 n n CAN HANA MLO sing 272 n n CAS CAO MLO sing 273 n y CAP CAT MLO doub 274 n y CAT CAS MLO sing 275 n y # _atom_sites.entry_id 3R5N _atom_sites.fract_transf_matrix[1][1] 0.015142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLO A 1 1 1 MLO MLO . C 2 MLO A 1 2 2 MLO MLO . D 3 HOH A 1 3 3 HOH HOH . D 3 HOH A 2 4 4 HOH HOH . D 3 HOH A 3 5 5 HOH HOH . D 3 HOH A 4 6 6 HOH HOH . D 3 HOH A 5 7 7 HOH HOH . D 3 HOH A 6 8 8 HOH HOH . D 3 HOH A 7 9 9 HOH HOH . D 3 HOH A 8 10 10 HOH HOH . D 3 HOH A 9 11 11 HOH HOH . D 3 HOH A 10 12 12 HOH HOH . D 3 HOH A 11 13 13 HOH HOH . D 3 HOH A 12 14 14 HOH HOH . D 3 HOH A 13 15 15 HOH HOH . D 3 HOH A 14 16 16 HOH HOH . D 3 HOH A 15 17 17 HOH HOH . D 3 HOH A 16 18 18 HOH HOH . D 3 HOH A 17 19 19 HOH HOH . D 3 HOH A 18 20 20 HOH HOH . D 3 HOH A 19 21 21 HOH HOH . D 3 HOH A 20 22 22 HOH HOH . D 3 HOH A 21 23 23 HOH HOH . D 3 HOH A 22 24 24 HOH HOH . D 3 HOH A 23 25 25 HOH HOH . D 3 HOH A 24 26 26 HOH HOH . D 3 HOH A 25 27 27 HOH HOH . D 3 HOH A 26 28 28 HOH HOH . D 3 HOH A 27 29 29 HOH HOH . D 3 HOH A 28 30 30 HOH HOH . D 3 HOH A 29 31 31 HOH HOH . D 3 HOH A 30 32 32 HOH HOH . D 3 HOH A 31 33 33 HOH HOH . D 3 HOH A 32 34 34 HOH HOH . D 3 HOH A 33 35 35 HOH HOH . D 3 HOH A 34 36 36 HOH HOH . D 3 HOH A 35 37 37 HOH HOH . D 3 HOH A 36 38 38 HOH HOH . D 3 HOH A 37 39 39 HOH HOH . D 3 HOH A 38 40 40 HOH HOH . D 3 HOH A 39 41 41 HOH HOH . D 3 HOH A 40 42 42 HOH HOH . D 3 HOH A 41 43 43 HOH HOH . D 3 HOH A 42 44 44 HOH HOH . D 3 HOH A 43 45 45 HOH HOH . D 3 HOH A 44 46 46 HOH HOH . D 3 HOH A 45 47 47 HOH HOH . D 3 HOH A 46 48 48 HOH HOH . D 3 HOH A 47 49 49 HOH HOH . D 3 HOH A 48 50 50 HOH HOH . D 3 HOH A 49 51 51 HOH HOH . D 3 HOH A 50 52 52 HOH HOH . D 3 HOH A 51 53 53 HOH HOH . D 3 HOH A 52 54 54 HOH HOH . D 3 HOH A 53 55 55 HOH HOH . D 3 HOH A 54 56 56 HOH HOH . D 3 HOH A 55 57 57 HOH HOH . D 3 HOH A 56 58 58 HOH HOH . D 3 HOH A 57 59 59 HOH HOH . D 3 HOH A 58 60 60 HOH HOH . D 3 HOH A 59 61 61 HOH HOH . D 3 HOH A 60 62 62 HOH HOH . D 3 HOH A 61 63 63 HOH HOH . D 3 HOH A 62 64 64 HOH HOH . D 3 HOH A 63 65 65 HOH HOH . D 3 HOH A 64 66 66 HOH HOH . D 3 HOH A 65 67 67 HOH HOH . D 3 HOH A 66 68 68 HOH HOH . D 3 HOH A 67 69 69 HOH HOH . D 3 HOH A 68 70 70 HOH HOH . D 3 HOH A 69 71 71 HOH HOH . D 3 HOH A 70 72 72 HOH HOH . D 3 HOH A 71 73 73 HOH HOH . D 3 HOH A 72 74 74 HOH HOH . D 3 HOH A 73 75 75 HOH HOH . D 3 HOH A 74 76 76 HOH HOH . D 3 HOH A 75 77 77 HOH HOH . D 3 HOH A 76 78 78 HOH HOH . D 3 HOH A 77 79 79 HOH HOH . D 3 HOH A 78 80 80 HOH HOH . D 3 HOH A 79 81 81 HOH HOH . D 3 HOH A 80 82 82 HOH HOH . D 3 HOH A 81 83 83 HOH HOH . D 3 HOH A 82 84 84 HOH HOH . D 3 HOH A 83 85 85 HOH HOH . D 3 HOH A 84 86 86 HOH HOH . D 3 HOH A 85 87 87 HOH HOH . D 3 HOH A 86 88 88 HOH HOH . D 3 HOH A 87 89 89 HOH HOH . D 3 HOH A 88 90 90 HOH HOH . D 3 HOH A 89 91 91 HOH HOH . D 3 HOH A 90 92 92 HOH HOH . D 3 HOH A 91 93 93 HOH HOH . D 3 HOH A 92 94 94 HOH HOH . D 3 HOH A 93 95 95 HOH HOH . D 3 HOH A 94 96 96 HOH HOH . D 3 HOH A 95 97 97 HOH HOH . D 3 HOH A 96 478 1 HOH HOH . D 3 HOH A 97 479 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA MLO . . . B 2 58.374 24.155 5.828 1 38.13 ? CAA MLO 1 A 1 HETATM 2 C CAB MLO . . . B 2 60.762 21.572 -1.405 1 38.53 ? CAB MLO 1 A 1 HETATM 3 O OAC MLO . . . B 2 53.163 22.159 1.62 1 37.55 ? OAC MLO 1 A 1 HETATM 4 O OAD MLO . . . B 2 53.619 23.576 -0.216 1 37.95 ? OAD MLO 1 A 1 HETATM 5 C CAE MLO . . . B 2 57.053 23.958 6.213 1 38.01 ? CAE MLO 1 A 1 HETATM 6 C CAF MLO . . . B 2 59.678 21.845 -0.577 1 38.72 ? CAF MLO 1 A 1 HETATM 7 C CAG MLO . . . B 2 53.365 22.851 3.869 1 37.43 ? CAG MLO 1 A 1 HETATM 8 C CAH MLO . . . B 2 55.629 23.457 -1.435 1 38.15 ? CAH MLO 1 A 1 HETATM 9 C CAI MLO . . . B 2 54.06 23.494 4.888 1 37.34 ? CAI MLO 1 A 1 HETATM 10 C CAJ MLO . . . B 2 57.016 23.356 -1.5 1 38.2 ? CAJ MLO 1 A 1 HETATM 11 C CAK MLO . . . B 2 55.809 24.043 3.312 1 37.37 ? CAK MLO 1 A 1 HETATM 12 C CAL MLO . . . B 2 57.1 23.287 0.912 1 37.6 ? CAL MLO 1 A 1 HETATM 13 C CAM MLO . . . B 2 56.055 24.797 5.726 1 37.77 ? CAM MLO 1 A 1 HETATM 14 C CAN MLO . . . B 2 59.283 23.163 -0.379 1 37.97 ? CAN MLO 1 A 1 HETATM 15 C CAO MLO . . . B 2 53.887 22.801 2.575 1 37.26 ? CAO MLO 1 A 1 HETATM 16 C CAP MLO . . . B 2 54.975 23.476 -0.203 1 37.68 ? CAP MLO 1 A 1 HETATM 17 C CAQ MLO . . . B 2 55.286 24.089 4.608 1 37.65 ? CAQ MLO 1 A 1 HETATM 18 C CAR MLO . . . B 2 57.754 23.269 -0.321 1 38.37 ? CAR MLO 1 A 1 HETATM 19 C CAS MLO . . . B 2 55.119 23.403 2.276 1 37.69 ? CAS MLO 1 A 1 HETATM 20 C CAT MLO . . . B 2 55.706 23.385 0.994 1 37.69 ? CAT MLO 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #