data_3R60 # _model_server_result.job_id GNhe7CR5tObcX3ZJ0eRrAQ _model_server_result.datetime_utc '2024-10-12 21:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 3R60 # _exptl.entry_id 3R60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.5 _cell.angle_gamma 90 _cell.entry_id 3R60 _cell.length_a 49.68 _cell.length_b 45.9 _cell.length_c 74.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 10 A GLU 11 1_555 C FE FE2 . A FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 A OE1 GLU 10 A GLU 11 1_555 C FE FE2 . A FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc3 A ND1 HIS 76 A HIS 77 1_555 C FE FE2 . A FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 A OE2 GLU 101 A GLU 102 1_555 C FE FE2 . A FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OE1 GLU 101 A GLU 102 1_555 C FE FE2 . A FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 C FE FE2 . A FE2 143 1_555 H O HOH . A HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 B OE2 GLU 10 B GLU 11 1_555 E FE FE2 . B FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 B ND1 HIS 76 B HIS 77 1_555 E FE FE2 . B FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 B OE2 GLU 98 B GLU 99 1_555 E FE FE2 . B FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc10 B OE1 GLU 101 B GLU 102 1_555 E FE FE2 . B FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 B OE2 GLU 101 B GLU 102 1_555 E FE FE2 . B FE2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 E FE FE2 . B FE2 143 1_555 I O HOH . B HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 3R60 _atom_sites.fract_transf_matrix[1][1] 0.020129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001231 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 143 1 FE2 FE2 . D 3 EPE A 1 301 301 EPE EPE . E 2 FE2 B 1 143 2 FE2 FE2 . F 3 EPE B 1 302 302 EPE EPE . G 4 PGO B 1 303 303 PGO PGO . H 5 HOH A 1 144 1 HOH HOH . H 5 HOH A 2 145 5 HOH HOH . H 5 HOH A 3 146 6 HOH HOH . H 5 HOH A 4 147 9 HOH HOH . H 5 HOH A 5 148 10 HOH HOH . H 5 HOH A 6 149 13 HOH HOH . H 5 HOH A 7 150 14 HOH HOH . H 5 HOH A 8 151 15 HOH HOH . H 5 HOH A 9 152 17 HOH HOH . H 5 HOH A 10 153 20 HOH HOH . H 5 HOH A 11 154 22 HOH HOH . H 5 HOH A 12 155 23 HOH HOH . H 5 HOH A 13 156 25 HOH HOH . H 5 HOH A 14 157 26 HOH HOH . H 5 HOH A 15 158 27 HOH HOH . H 5 HOH A 16 159 159 HOH HOH . H 5 HOH A 17 160 28 HOH HOH . H 5 HOH A 18 161 32 HOH HOH . H 5 HOH A 19 162 162 HOH HOH . H 5 HOH A 20 163 163 HOH HOH . H 5 HOH A 21 164 33 HOH HOH . H 5 HOH A 22 165 35 HOH HOH . H 5 HOH A 23 166 166 HOH HOH . H 5 HOH A 24 167 36 HOH HOH . H 5 HOH A 25 168 168 HOH HOH . H 5 HOH A 26 169 169 HOH HOH . H 5 HOH A 27 170 170 HOH HOH . H 5 HOH A 28 171 37 HOH HOH . H 5 HOH A 29 172 41 HOH HOH . H 5 HOH A 30 173 42 HOH HOH . H 5 HOH A 31 174 46 HOH HOH . H 5 HOH A 32 175 175 HOH HOH . H 5 HOH A 33 176 176 HOH HOH . H 5 HOH A 34 177 47 HOH HOH . H 5 HOH A 35 178 178 HOH HOH . H 5 HOH A 36 179 179 HOH HOH . H 5 HOH A 37 180 180 HOH HOH . H 5 HOH A 38 181 181 HOH HOH . H 5 HOH A 39 182 48 HOH HOH . H 5 HOH A 40 183 50 HOH HOH . H 5 HOH A 41 184 51 HOH HOH . H 5 HOH A 42 185 185 HOH HOH . H 5 HOH A 43 186 56 HOH HOH . H 5 HOH A 44 187 57 HOH HOH . H 5 HOH A 45 188 61 HOH HOH . H 5 HOH A 46 189 189 HOH HOH . H 5 HOH A 47 190 190 HOH HOH . H 5 HOH A 48 191 67 HOH HOH . H 5 HOH A 49 192 69 HOH HOH . H 5 HOH A 50 193 193 HOH HOH . H 5 HOH A 51 194 73 HOH HOH . H 5 HOH A 52 195 74 HOH HOH . H 5 HOH A 53 196 76 HOH HOH . H 5 HOH A 54 197 77 HOH HOH . H 5 HOH A 55 198 80 HOH HOH . H 5 HOH A 56 199 84 HOH HOH . H 5 HOH A 57 200 200 HOH HOH . H 5 HOH A 58 201 89 HOH HOH . H 5 HOH A 59 202 90 HOH HOH . H 5 HOH A 60 203 203 HOH HOH . H 5 HOH A 61 204 204 HOH HOH . H 5 HOH A 62 205 205 HOH HOH . H 5 HOH A 63 206 91 HOH HOH . H 5 HOH A 64 207 92 HOH HOH . H 5 HOH A 65 208 93 HOH HOH . H 5 HOH A 66 209 94 HOH HOH . H 5 HOH A 67 210 98 HOH HOH . H 5 HOH A 68 211 104 HOH HOH . H 5 HOH A 69 212 212 HOH HOH . H 5 HOH A 70 213 105 HOH HOH . H 5 HOH A 71 214 214 HOH HOH . H 5 HOH A 72 215 106 HOH HOH . H 5 HOH A 73 216 107 HOH HOH . H 5 HOH A 74 217 111 HOH HOH . H 5 HOH A 75 218 117 HOH HOH . H 5 HOH A 76 219 122 HOH HOH . H 5 HOH A 77 220 220 HOH HOH . H 5 HOH A 78 221 123 HOH HOH . H 5 HOH A 79 222 124 HOH HOH . H 5 HOH A 80 223 125 HOH HOH . H 5 HOH A 81 224 126 HOH HOH . H 5 HOH A 82 225 130 HOH HOH . H 5 HOH A 83 226 131 HOH HOH . H 5 HOH A 84 227 143 HOH HOH . H 5 HOH A 85 231 231 HOH HOH . H 5 HOH A 86 238 238 HOH HOH . I 5 HOH B 1 144 2 HOH HOH . I 5 HOH B 2 145 145 HOH HOH . I 5 HOH B 3 146 3 HOH HOH . I 5 HOH B 4 147 147 HOH HOH . I 5 HOH B 5 148 4 HOH HOH . I 5 HOH B 6 149 149 HOH HOH . I 5 HOH B 7 150 7 HOH HOH . I 5 HOH B 8 151 8 HOH HOH . I 5 HOH B 9 152 152 HOH HOH . I 5 HOH B 10 153 153 HOH HOH . I 5 HOH B 11 154 11 HOH HOH . I 5 HOH B 12 155 155 HOH HOH . I 5 HOH B 13 156 12 HOH HOH . I 5 HOH B 14 157 16 HOH HOH . I 5 HOH B 15 158 18 HOH HOH . I 5 HOH B 16 159 21 HOH HOH . I 5 HOH B 17 160 24 HOH HOH . I 5 HOH B 18 161 161 HOH HOH . I 5 HOH B 19 162 29 HOH HOH . I 5 HOH B 20 163 30 HOH HOH . I 5 HOH B 21 164 164 HOH HOH . I 5 HOH B 22 165 165 HOH HOH . I 5 HOH B 23 166 31 HOH HOH . I 5 HOH B 24 167 34 HOH HOH . I 5 HOH B 25 168 38 HOH HOH . I 5 HOH B 26 169 39 HOH HOH . I 5 HOH B 27 170 40 HOH HOH . I 5 HOH B 28 171 171 HOH HOH . I 5 HOH B 29 172 43 HOH HOH . I 5 HOH B 30 173 173 HOH HOH . I 5 HOH B 31 174 44 HOH HOH . I 5 HOH B 32 175 45 HOH HOH . I 5 HOH B 33 176 49 HOH HOH . I 5 HOH B 34 177 177 HOH HOH . I 5 HOH B 35 178 52 HOH HOH . I 5 HOH B 36 179 53 HOH HOH . I 5 HOH B 37 180 55 HOH HOH . I 5 HOH B 38 181 58 HOH HOH . I 5 HOH B 39 182 60 HOH HOH . I 5 HOH B 40 183 62 HOH HOH . I 5 HOH B 41 184 63 HOH HOH . I 5 HOH B 42 185 64 HOH HOH . I 5 HOH B 43 186 65 HOH HOH . I 5 HOH B 44 187 187 HOH HOH . I 5 HOH B 45 188 68 HOH HOH . I 5 HOH B 46 189 70 HOH HOH . I 5 HOH B 47 190 75 HOH HOH . I 5 HOH B 48 191 191 HOH HOH . I 5 HOH B 49 192 192 HOH HOH . I 5 HOH B 50 193 78 HOH HOH . I 5 HOH B 51 194 194 HOH HOH . I 5 HOH B 52 195 195 HOH HOH . I 5 HOH B 53 196 79 HOH HOH . I 5 HOH B 54 197 197 HOH HOH . I 5 HOH B 55 198 198 HOH HOH . I 5 HOH B 56 199 199 HOH HOH . I 5 HOH B 57 200 83 HOH HOH . I 5 HOH B 58 201 86 HOH HOH . I 5 HOH B 59 202 95 HOH HOH . I 5 HOH B 60 203 96 HOH HOH . I 5 HOH B 61 204 100 HOH HOH . I 5 HOH B 62 205 101 HOH HOH . I 5 HOH B 63 206 206 HOH HOH . I 5 HOH B 64 207 207 HOH HOH . I 5 HOH B 65 208 103 HOH HOH . I 5 HOH B 66 209 209 HOH HOH . I 5 HOH B 67 210 210 HOH HOH . I 5 HOH B 68 211 108 HOH HOH . I 5 HOH B 69 212 109 HOH HOH . I 5 HOH B 70 213 213 HOH HOH . I 5 HOH B 71 214 110 HOH HOH . I 5 HOH B 72 215 113 HOH HOH . I 5 HOH B 73 216 216 HOH HOH . I 5 HOH B 74 217 217 HOH HOH . I 5 HOH B 75 218 115 HOH HOH . I 5 HOH B 76 219 116 HOH HOH . I 5 HOH B 77 220 128 HOH HOH . I 5 HOH B 78 221 221 HOH HOH . I 5 HOH B 79 222 129 HOH HOH . I 5 HOH B 80 223 132 HOH HOH . I 5 HOH B 81 224 134 HOH HOH . I 5 HOH B 82 225 225 HOH HOH . I 5 HOH B 83 226 135 HOH HOH . I 5 HOH B 84 227 136 HOH HOH . I 5 HOH B 85 228 139 HOH HOH . I 5 HOH B 86 229 229 HOH HOH . I 5 HOH B 87 230 230 HOH HOH . I 5 HOH B 88 231 140 HOH HOH . I 5 HOH B 89 232 232 HOH HOH . I 5 HOH B 90 233 141 HOH HOH . I 5 HOH B 91 234 142 HOH HOH . I 5 HOH B 92 236 236 HOH HOH . I 5 HOH B 93 237 237 HOH HOH . I 5 HOH B 94 239 239 HOH HOH . I 5 HOH B 95 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 3 -0.538 15.838 11.423 1 29.56 ? N1 EPE 302 B 1 HETATM 2 C C2 EPE . . . F 3 0.142 16.93 12.142 1 21.92 ? C2 EPE 302 B 1 HETATM 3 C C3 EPE . . . F 3 -0.375 18.279 11.583 1 34.28 ? C3 EPE 302 B 1 HETATM 4 N N4 EPE . . . F 3 -1.654 18.245 10.846 1 36.12 ? N4 EPE 302 B 1 HETATM 5 C C5 EPE . . . F 3 -2.405 17.029 10.585 1 33.7 ? C5 EPE 302 B 1 HETATM 6 C C6 EPE . . . F 3 -1.992 15.924 11.539 1 27.78 ? C6 EPE 302 B 1 HETATM 7 C C7 EPE . . . F 3 -2.381 19.468 10.554 1 40.33 ? C7 EPE 302 B 1 HETATM 8 C C8 EPE . . . F 3 -2.91 19.469 9.132 1 42.75 ? C8 EPE 302 B 1 HETATM 9 O O8 EPE . . . F 3 -4.208 18.906 9.09 1 41.87 ? O8 EPE 302 B 1 HETATM 10 C C9 EPE . . . F 3 -0.044 14.465 11.652 1 29.38 ? C9 EPE 302 B 1 HETATM 11 C C10 EPE . . . F 3 -0.755 13.889 12.875 1 29.16 ? C10 EPE 302 B 1 HETATM 12 S S EPE . . . F 3 0.139 12.55 13.701 1 27.57 ? S EPE 302 B 1 HETATM 13 O O1S EPE . . . F 3 0.855 11.84 12.657 1 19.2 ? O1S EPE 302 B 1 HETATM 14 O O2S EPE . . . F 3 -0.746 11.653 14.406 1 34.55 ? O2S EPE 302 B 1 HETATM 15 O O3S EPE . . . F 3 1.05 13.23 14.601 1 22.8 ? O3S EPE 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #