data_3R6B # _model_server_result.job_id A1VMHL-bxNRiMlxCIzHenQ _model_server_result.datetime_utc '2024-12-21 18:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":8}' # _entry.id 3R6B # _exptl.entry_id 3R6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R6B _cell.length_a 66.364 _cell.length_b 84.817 _cell.length_c 60.707 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 447 1_555 A SG CYS 60 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 451 1_555 A SG CYS 65 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 38 A CYS 462 1_555 A SG CYS 50 A CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 80 A CYS 504 1_555 A SG CYS 117 A CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 84 A CYS 508 1_555 A SG CYS 122 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 95 A CYS 519 1_555 A SG CYS 107 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3R6B _atom_sites.fract_transf_matrix[1][1] 0.015068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1 1 EDO EDO . C 2 EDO A 1 2 2 EDO EDO . D 2 EDO A 1 3 3 EDO EDO . E 2 EDO A 1 4 4 EDO EDO . F 2 EDO A 1 5 5 EDO EDO . G 2 EDO A 1 6 6 EDO EDO . H 2 EDO A 1 7 7 EDO EDO . I 2 EDO A 1 8 8 EDO EDO . J 3 HOH A 1 9 9 HOH HOH . J 3 HOH A 2 10 10 HOH HOH . J 3 HOH A 3 11 11 HOH HOH . J 3 HOH A 4 12 12 HOH HOH . J 3 HOH A 5 13 13 HOH HOH . J 3 HOH A 6 14 14 HOH HOH . J 3 HOH A 7 15 15 HOH HOH . J 3 HOH A 8 16 16 HOH HOH . J 3 HOH A 9 17 17 HOH HOH . J 3 HOH A 10 18 18 HOH HOH . J 3 HOH A 11 19 19 HOH HOH . J 3 HOH A 12 20 20 HOH HOH . J 3 HOH A 13 21 21 HOH HOH . J 3 HOH A 14 22 22 HOH HOH . J 3 HOH A 15 23 23 HOH HOH . J 3 HOH A 16 24 24 HOH HOH . J 3 HOH A 17 25 25 HOH HOH . J 3 HOH A 18 26 26 HOH HOH . J 3 HOH A 19 27 27 HOH HOH . J 3 HOH A 20 28 28 HOH HOH . J 3 HOH A 21 29 29 HOH HOH . J 3 HOH A 22 30 30 HOH HOH . J 3 HOH A 23 31 31 HOH HOH . J 3 HOH A 24 32 32 HOH HOH . J 3 HOH A 25 33 33 HOH HOH . J 3 HOH A 26 34 34 HOH HOH . J 3 HOH A 27 35 35 HOH HOH . J 3 HOH A 28 36 36 HOH HOH . J 3 HOH A 29 37 37 HOH HOH . J 3 HOH A 30 38 38 HOH HOH . J 3 HOH A 31 39 39 HOH HOH . J 3 HOH A 32 40 40 HOH HOH . J 3 HOH A 33 41 41 HOH HOH . J 3 HOH A 34 42 42 HOH HOH . J 3 HOH A 35 43 43 HOH HOH . J 3 HOH A 36 44 44 HOH HOH . J 3 HOH A 37 45 45 HOH HOH . J 3 HOH A 38 46 46 HOH HOH . J 3 HOH A 39 47 47 HOH HOH . J 3 HOH A 40 48 48 HOH HOH . J 3 HOH A 41 49 49 HOH HOH . J 3 HOH A 42 50 50 HOH HOH . J 3 HOH A 43 51 51 HOH HOH . J 3 HOH A 44 52 52 HOH HOH . J 3 HOH A 45 53 53 HOH HOH . J 3 HOH A 46 54 54 HOH HOH . J 3 HOH A 47 55 55 HOH HOH . J 3 HOH A 48 56 56 HOH HOH . J 3 HOH A 49 57 57 HOH HOH . J 3 HOH A 50 58 58 HOH HOH . J 3 HOH A 51 59 59 HOH HOH . J 3 HOH A 52 60 60 HOH HOH . J 3 HOH A 53 61 61 HOH HOH . J 3 HOH A 54 62 62 HOH HOH . J 3 HOH A 55 63 63 HOH HOH . J 3 HOH A 56 64 64 HOH HOH . J 3 HOH A 57 65 65 HOH HOH . J 3 HOH A 58 66 66 HOH HOH . J 3 HOH A 59 67 67 HOH HOH . J 3 HOH A 60 68 68 HOH HOH . J 3 HOH A 61 69 69 HOH HOH . J 3 HOH A 62 70 70 HOH HOH . J 3 HOH A 63 71 71 HOH HOH . J 3 HOH A 64 72 72 HOH HOH . J 3 HOH A 65 73 73 HOH HOH . J 3 HOH A 66 74 74 HOH HOH . J 3 HOH A 67 75 75 HOH HOH . J 3 HOH A 68 76 76 HOH HOH . J 3 HOH A 69 77 77 HOH HOH . J 3 HOH A 70 78 78 HOH HOH . J 3 HOH A 71 79 79 HOH HOH . J 3 HOH A 72 80 80 HOH HOH . J 3 HOH A 73 81 81 HOH HOH . J 3 HOH A 74 82 82 HOH HOH . J 3 HOH A 75 83 83 HOH HOH . J 3 HOH A 76 84 84 HOH HOH . J 3 HOH A 77 85 85 HOH HOH . J 3 HOH A 78 86 86 HOH HOH . J 3 HOH A 79 87 87 HOH HOH . J 3 HOH A 80 88 88 HOH HOH . J 3 HOH A 81 89 89 HOH HOH . J 3 HOH A 82 90 90 HOH HOH . J 3 HOH A 83 91 91 HOH HOH . J 3 HOH A 84 92 92 HOH HOH . J 3 HOH A 85 93 93 HOH HOH . J 3 HOH A 86 94 94 HOH HOH . J 3 HOH A 87 578 1 HOH HOH . J 3 HOH A 88 579 2 HOH HOH . J 3 HOH A 89 580 3 HOH HOH . J 3 HOH A 90 581 4 HOH HOH . J 3 HOH A 91 582 5 HOH HOH . J 3 HOH A 92 583 6 HOH HOH . J 3 HOH A 93 584 7 HOH HOH . J 3 HOH A 94 585 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 2 19.758 33.582 -14.665 1 75.42 ? C1 EDO 8 A 1 HETATM 2 O O1 EDO . . . I 2 18.511 33.035 -14.497 1 75.46 ? O1 EDO 8 A 1 HETATM 3 C C2 EDO . . . I 2 19.912 34.676 -15.656 1 74.95 ? C2 EDO 8 A 1 HETATM 4 O O2 EDO . . . I 2 20.737 34.454 -16.727 1 73.78 ? O2 EDO 8 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #