data_3R6I # _model_server_result.job_id rPPwE2rFogZ1uD4y7DJ0Og _model_server_result.datetime_utc '2024-11-24 03:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3R6I # _exptl.entry_id 3R6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R6I _cell.length_a 58.318 _cell.length_b 64.788 _cell.length_c 96.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 277 n n PA O2A NAP sing 278 n n PA O5B NAP sing 279 n n PA O3 NAP sing 280 n n O2A HOA2 NAP sing 281 n n O5B C5B NAP sing 282 n n C5B C4B NAP sing 283 n n C5B H51A NAP sing 284 n n C5B H52A NAP sing 285 n n C4B O4B NAP sing 286 n n C4B C3B NAP sing 287 n n C4B H4B NAP sing 288 n n O4B C1B NAP sing 289 n n C3B O3B NAP sing 290 n n C3B C2B NAP sing 291 n n C3B H3B NAP sing 292 n n O3B HO3A NAP sing 293 n n C2B O2B NAP sing 294 n n C2B C1B NAP sing 295 n n C2B H2B NAP sing 296 n n O2B P2B NAP sing 297 n n C1B N9A NAP sing 298 n n C1B H1B NAP sing 299 n n N9A C8A NAP sing 300 n y N9A C4A NAP sing 301 n y C8A N7A NAP doub 302 n y C8A H8A NAP sing 303 n n N7A C5A NAP sing 304 n y C5A C6A NAP sing 305 n y C5A C4A NAP doub 306 n y C6A N6A NAP sing 307 n n C6A N1A NAP doub 308 n y N6A H61A NAP sing 309 n n N6A H62A NAP sing 310 n n N1A C2A NAP sing 311 n y C2A N3A NAP doub 312 n y C2A H2A NAP sing 313 n n N3A C4A NAP sing 314 n y O3 PN NAP sing 315 n n PN O1N NAP doub 316 n n PN O2N NAP sing 317 n n PN O5D NAP sing 318 n n O5D C5D NAP sing 319 n n C5D C4D NAP sing 320 n n C5D H51N NAP sing 321 n n C5D H52N NAP sing 322 n n C4D O4D NAP sing 323 n n C4D C3D NAP sing 324 n n C4D H4D NAP sing 325 n n O4D C1D NAP sing 326 n n C3D O3D NAP sing 327 n n C3D C2D NAP sing 328 n n C3D H3D NAP sing 329 n n O3D HO3N NAP sing 330 n n C2D O2D NAP sing 331 n n C2D C1D NAP sing 332 n n C2D H2D NAP sing 333 n n O2D HO2N NAP sing 334 n n C1D N1N NAP sing 335 n n C1D H1D NAP sing 336 n n N1N C2N NAP sing 337 n y N1N C6N NAP doub 338 n y C2N C3N NAP doub 339 n y C2N H2N NAP sing 340 n n C3N C7N NAP sing 341 n n C3N C4N NAP sing 342 n y C7N O7N NAP doub 343 n n C7N N7N NAP sing 344 n n N7N H71N NAP sing 345 n n N7N H72N NAP sing 346 n n C4N C5N NAP doub 347 n y C4N H4N NAP sing 348 n n C5N C6N NAP sing 349 n y C5N H5N NAP sing 350 n n C6N H6N NAP sing 351 n n P2B O1X NAP doub 352 n n P2B O2X NAP sing 353 n n P2B O3X NAP sing 354 n n O2X HOP2 NAP sing 355 n n O3X HOP3 NAP sing 356 n n # _atom_sites.entry_id 3R6I _atom_sites.fract_transf_matrix[1][1] 0.017147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 JMS A 1 332 1 JMS JMS . D 4 EDO A 1 333 1 EDO EDO . E 4 EDO A 1 334 2 EDO EDO . F 5 HOH A 1 335 1 HOH HOH . F 5 HOH A 2 336 2 HOH HOH . F 5 HOH A 3 337 3 HOH HOH . F 5 HOH A 4 338 4 HOH HOH . F 5 HOH A 5 339 5 HOH HOH . F 5 HOH A 6 340 6 HOH HOH . F 5 HOH A 7 341 7 HOH HOH . F 5 HOH A 8 342 8 HOH HOH . F 5 HOH A 9 343 9 HOH HOH . F 5 HOH A 10 344 10 HOH HOH . F 5 HOH A 11 345 11 HOH HOH . F 5 HOH A 12 346 12 HOH HOH . F 5 HOH A 13 347 13 HOH HOH . F 5 HOH A 14 348 14 HOH HOH . F 5 HOH A 15 349 15 HOH HOH . F 5 HOH A 16 350 16 HOH HOH . F 5 HOH A 17 351 17 HOH HOH . F 5 HOH A 18 352 18 HOH HOH . F 5 HOH A 19 353 19 HOH HOH . F 5 HOH A 20 354 20 HOH HOH . F 5 HOH A 21 355 21 HOH HOH . F 5 HOH A 22 356 22 HOH HOH . F 5 HOH A 23 357 23 HOH HOH . F 5 HOH A 24 358 24 HOH HOH . F 5 HOH A 25 359 25 HOH HOH . F 5 HOH A 26 360 26 HOH HOH . F 5 HOH A 27 361 27 HOH HOH . F 5 HOH A 28 362 28 HOH HOH . F 5 HOH A 29 363 29 HOH HOH . F 5 HOH A 30 364 30 HOH HOH . F 5 HOH A 31 365 31 HOH HOH . F 5 HOH A 32 366 32 HOH HOH . F 5 HOH A 33 367 33 HOH HOH . F 5 HOH A 34 368 34 HOH HOH . F 5 HOH A 35 369 35 HOH HOH . F 5 HOH A 36 370 36 HOH HOH . F 5 HOH A 37 371 37 HOH HOH . F 5 HOH A 38 372 38 HOH HOH . F 5 HOH A 39 373 39 HOH HOH . F 5 HOH A 40 374 40 HOH HOH . F 5 HOH A 41 375 41 HOH HOH . F 5 HOH A 42 376 42 HOH HOH . F 5 HOH A 43 377 43 HOH HOH . F 5 HOH A 44 378 44 HOH HOH . F 5 HOH A 45 379 45 HOH HOH . F 5 HOH A 46 380 46 HOH HOH . F 5 HOH A 47 381 47 HOH HOH . F 5 HOH A 48 382 48 HOH HOH . F 5 HOH A 49 383 49 HOH HOH . F 5 HOH A 50 384 50 HOH HOH . F 5 HOH A 51 385 51 HOH HOH . F 5 HOH A 52 386 52 HOH HOH . F 5 HOH A 53 387 53 HOH HOH . F 5 HOH A 54 388 54 HOH HOH . F 5 HOH A 55 389 55 HOH HOH . F 5 HOH A 56 390 56 HOH HOH . F 5 HOH A 57 391 57 HOH HOH . F 5 HOH A 58 392 58 HOH HOH . F 5 HOH A 59 393 59 HOH HOH . F 5 HOH A 60 394 60 HOH HOH . F 5 HOH A 61 395 61 HOH HOH . F 5 HOH A 62 396 62 HOH HOH . F 5 HOH A 63 397 63 HOH HOH . F 5 HOH A 64 398 64 HOH HOH . F 5 HOH A 65 399 65 HOH HOH . F 5 HOH A 66 400 66 HOH HOH . F 5 HOH A 67 401 67 HOH HOH . F 5 HOH A 68 402 68 HOH HOH . F 5 HOH A 69 403 69 HOH HOH . F 5 HOH A 70 404 70 HOH HOH . F 5 HOH A 71 405 71 HOH HOH . F 5 HOH A 72 406 72 HOH HOH . F 5 HOH A 73 407 73 HOH HOH . F 5 HOH A 74 408 74 HOH HOH . F 5 HOH A 75 409 75 HOH HOH . F 5 HOH A 76 410 76 HOH HOH . F 5 HOH A 77 411 77 HOH HOH . F 5 HOH A 78 412 78 HOH HOH . F 5 HOH A 79 413 79 HOH HOH . F 5 HOH A 80 414 80 HOH HOH . F 5 HOH A 81 415 81 HOH HOH . F 5 HOH A 82 416 82 HOH HOH . F 5 HOH A 83 417 83 HOH HOH . F 5 HOH A 84 418 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 1.692 -3.746 -2.904 1 15.98 ? PA NAP 700 A 1 HETATM 2 O O1A NAP . . . B 2 3.162 -3.595 -2.951 1 15.99 ? O1A NAP 700 A 1 HETATM 3 O O2A NAP . . . B 2 1.145 -5.167 -2.734 1 12.48 ? O2A NAP 700 A 1 HETATM 4 O O5B NAP . . . B 2 0.962 -2.896 -1.698 1 18.32 ? O5B NAP 700 A 1 HETATM 5 C C5B NAP . . . B 2 -0.381 -3.089 -1.385 1 16.88 ? C5B NAP 700 A 1 HETATM 6 C C4B NAP . . . B 2 -0.8 -2.039 -0.272 1 19.12 ? C4B NAP 700 A 1 HETATM 7 O O4B NAP . . . B 2 0.197 -2.202 0.734 1 16.47 ? O4B NAP 700 A 1 HETATM 8 C C3B NAP . . . B 2 -0.447 -0.679 -0.787 1 20.9 ? C3B NAP 700 A 1 HETATM 9 O O3B NAP . . . B 2 -1.57 -0.158 -1.418 1 17.53 ? O3B NAP 700 A 1 HETATM 10 C C2B NAP . . . B 2 -0.05 0.121 0.471 1 20.04 ? C2B NAP 700 A 1 HETATM 11 O O2B NAP . . . B 2 -1.07 1.057 0.91 1 20.55 ? O2B NAP 700 A 1 HETATM 12 C C1B NAP . . . B 2 0.102 -0.937 1.468 1 20.71 ? C1B NAP 700 A 1 HETATM 13 N N9A NAP . . . B 2 1.424 -0.803 2.211 1 21.41 ? N9A NAP 700 A 1 HETATM 14 C C8A NAP . . . B 2 2.648 -0.472 1.728 1 20.32 ? C8A NAP 700 A 1 HETATM 15 N N7A NAP . . . B 2 3.543 -0.543 2.697 1 18.16 ? N7A NAP 700 A 1 HETATM 16 C C5A NAP . . . B 2 2.894 -0.917 3.801 1 19.72 ? C5A NAP 700 A 1 HETATM 17 C C6A NAP . . . B 2 3.287 -1.043 5.129 1 21.36 ? C6A NAP 700 A 1 HETATM 18 N N6A NAP . . . B 2 4.585 -0.868 5.495 1 19.21 ? N6A NAP 700 A 1 HETATM 19 N N1A NAP . . . B 2 2.349 -1.398 6.018 1 18.29 ? N1A NAP 700 A 1 HETATM 20 C C2A NAP . . . B 2 1.03 -1.603 5.675 1 20.79 ? C2A NAP 700 A 1 HETATM 21 N N3A NAP . . . B 2 0.6 -1.433 4.436 1 19.28 ? N3A NAP 700 A 1 HETATM 22 C C4A NAP . . . B 2 1.524 -1.073 3.496 1 24.75 ? C4A NAP 700 A 1 HETATM 23 O O3 NAP . . . B 2 0.931 -3.166 -4.24 1 14.1 ? O3 NAP 700 A 1 HETATM 24 P PN NAP . . . B 2 0.793 -3.479 -5.794 1 16.83 ? PN NAP 700 A 1 HETATM 25 O O1N NAP . . . B 2 0.462 -2.145 -6.319 1 20.37 ? O1N NAP 700 A 1 HETATM 26 O O2N NAP . . . B 2 -0.092 -4.689 -6.011 1 19.82 ? O2N NAP 700 A 1 HETATM 27 O O5D NAP . . . B 2 2.291 -3.963 -6.177 1 15.57 ? O5D NAP 700 A 1 HETATM 28 C C5D NAP . . . B 2 3.422 -2.947 -6.135 1 13.86 ? C5D NAP 700 A 1 HETATM 29 C C4D NAP . . . B 2 3.893 -2.493 -7.49 1 16.56 ? C4D NAP 700 A 1 HETATM 30 O O4D NAP . . . B 2 4.103 -3.651 -8.297 1 14.68 ? O4D NAP 700 A 1 HETATM 31 C C3D NAP . . . B 2 2.791 -1.754 -8.296 1 14.76 ? C3D NAP 700 A 1 HETATM 32 O O3D NAP . . . B 2 2.62 -0.436 -7.697 1 17.28 ? O3D NAP 700 A 1 HETATM 33 C C2D NAP . . . B 2 3.438 -1.743 -9.67 1 15.81 ? C2D NAP 700 A 1 HETATM 34 O O2D NAP . . . B 2 4.603 -0.897 -9.62 1 15.95 ? O2D NAP 700 A 1 HETATM 35 C C1D NAP . . . B 2 3.94 -3.243 -9.726 1 13.13 ? C1D NAP 700 A 1 HETATM 36 N N1N NAP . . . B 2 2.864 -4.146 -10.206 1 15.05 ? N1N NAP 700 A 1 HETATM 37 C C2N NAP . . . B 2 3.072 -4.657 -11.478 1 15.28 ? C2N NAP 700 A 1 HETATM 38 C C3N NAP . . . B 2 2.109 -5.538 -12.022 1 15.79 ? C3N NAP 700 A 1 HETATM 39 C C7N NAP . . . B 2 2.385 -6.132 -13.403 1 13.69 ? C7N NAP 700 A 1 HETATM 40 O O7N NAP . . . B 2 1.451 -6.556 -14.116 1 16.95 ? O7N NAP 700 A 1 HETATM 41 N N7N NAP . . . B 2 3.719 -6.317 -13.697 1 16.85 ? N7N NAP 700 A 1 HETATM 42 C C4N NAP . . . B 2 0.944 -5.823 -11.3 1 15.21 ? C4N NAP 700 A 1 HETATM 43 C C5N NAP . . . B 2 0.753 -5.28 -9.988 1 15.69 ? C5N NAP 700 A 1 HETATM 44 C C6N NAP . . . B 2 1.711 -4.415 -9.438 1 13.84 ? C6N NAP 700 A 1 HETATM 45 P P2B NAP . . . B 2 -0.589 2.672 1.12 1 23.77 ? P2B NAP 700 A 1 HETATM 46 O O1X NAP . . . B 2 -0.305 3.245 -0.244 1 23.44 ? O1X NAP 700 A 1 HETATM 47 O O2X NAP . . . B 2 -1.797 3.269 1.876 1 22.89 ? O2X NAP 700 A 1 HETATM 48 O O3X NAP . . . B 2 0.657 2.559 2.041 1 19.88 ? O3X NAP 700 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #