data_3R6S # _model_server_result.job_id eXHjbEOWUMuj4R-HaTjorw _model_server_result.datetime_utc '2025-03-04 21:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 3R6S # _exptl.entry_id 3R6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R6S _cell.length_a 111.248 _cell.length_b 111.248 _cell.length_c 186.951 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,H,J,P,R 1 1 B,I,Q 2 1,2 D,E,K,L,M,S,T 3 1 F,N,O,U 4 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -62.317 3 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -124.634 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3R6S _atom_sites.fract_transf_matrix[1][1] 0.008989 _atom_sites.fract_transf_matrix[1][2] 0.00519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CMP A 1 301 301 CMP CMP . H 3 HEZ A 1 228 1 HEZ HEZ . I 2 CMP B 1 301 301 CMP CMP . J 2 CMP C 1 301 301 CMP CMP . K 2 CMP D 1 301 301 CMP CMP . L 3 HEZ D 1 228 1 HEZ HEZ . M 2 CMP E 1 301 301 CMP CMP . N 2 CMP F 1 301 301 CMP CMP . O 3 HEZ F 1 228 1 HEZ HEZ . P 4 HOH A 1 229 6 HOH HOH . P 4 HOH A 2 230 7 HOH HOH . P 4 HOH A 3 231 19 HOH HOH . P 4 HOH A 4 232 54 HOH HOH . P 4 HOH A 5 233 58 HOH HOH . P 4 HOH A 6 234 59 HOH HOH . P 4 HOH A 7 235 67 HOH HOH . P 4 HOH A 8 236 88 HOH HOH . P 4 HOH A 9 237 97 HOH HOH . P 4 HOH A 10 238 101 HOH HOH . P 4 HOH A 11 239 105 HOH HOH . P 4 HOH A 12 240 112 HOH HOH . P 4 HOH A 13 241 133 HOH HOH . P 4 HOH A 14 242 151 HOH HOH . P 4 HOH A 15 243 165 HOH HOH . P 4 HOH A 16 244 169 HOH HOH . P 4 HOH A 17 245 199 HOH HOH . P 4 HOH A 18 246 200 HOH HOH . P 4 HOH A 19 247 210 HOH HOH . P 4 HOH A 20 248 212 HOH HOH . P 4 HOH A 21 249 249 HOH HOH . P 4 HOH A 22 250 301 HOH HOH . P 4 HOH A 23 253 253 HOH HOH . P 4 HOH A 24 256 256 HOH HOH . P 4 HOH A 25 258 258 HOH HOH . P 4 HOH A 26 264 264 HOH HOH . P 4 HOH A 27 266 266 HOH HOH . P 4 HOH A 28 294 294 HOH HOH . P 4 HOH A 29 299 299 HOH HOH . P 4 HOH A 30 304 304 HOH HOH . P 4 HOH A 31 309 309 HOH HOH . P 4 HOH A 32 311 311 HOH HOH . Q 4 HOH B 1 228 14 HOH HOH . Q 4 HOH B 2 229 20 HOH HOH . Q 4 HOH B 3 230 32 HOH HOH . Q 4 HOH B 4 231 33 HOH HOH . Q 4 HOH B 5 232 85 HOH HOH . Q 4 HOH B 6 233 153 HOH HOH . Q 4 HOH B 7 234 195 HOH HOH . Q 4 HOH B 8 235 211 HOH HOH . Q 4 HOH B 9 236 13 HOH HOH . Q 4 HOH B 10 237 14 HOH HOH . Q 4 HOH B 11 238 20 HOH HOH . Q 4 HOH B 12 263 263 HOH HOH . Q 4 HOH B 13 271 271 HOH HOH . Q 4 HOH B 14 272 272 HOH HOH . Q 4 HOH B 15 273 273 HOH HOH . Q 4 HOH B 16 274 274 HOH HOH . Q 4 HOH B 17 305 305 HOH HOH . Q 4 HOH B 18 306 306 HOH HOH . R 4 HOH C 1 228 29 HOH HOH . R 4 HOH C 2 229 38 HOH HOH . R 4 HOH C 3 230 81 HOH HOH . R 4 HOH C 4 231 93 HOH HOH . R 4 HOH C 5 232 98 HOH HOH . R 4 HOH C 6 233 115 HOH HOH . R 4 HOH C 7 234 116 HOH HOH . R 4 HOH C 8 235 235 HOH HOH . R 4 HOH C 9 236 132 HOH HOH . R 4 HOH C 10 237 136 HOH HOH . R 4 HOH C 11 238 149 HOH HOH . R 4 HOH C 12 239 157 HOH HOH . R 4 HOH C 13 240 158 HOH HOH . R 4 HOH C 14 241 162 HOH HOH . R 4 HOH C 15 242 163 HOH HOH . R 4 HOH C 16 243 183 HOH HOH . R 4 HOH C 17 244 191 HOH HOH . R 4 HOH C 18 245 201 HOH HOH . R 4 HOH C 19 246 202 HOH HOH . R 4 HOH C 20 247 206 HOH HOH . R 4 HOH C 21 251 251 HOH HOH . R 4 HOH C 22 252 252 HOH HOH . R 4 HOH C 23 277 277 HOH HOH . R 4 HOH C 24 278 278 HOH HOH . R 4 HOH C 25 282 282 HOH HOH . R 4 HOH C 26 307 307 HOH HOH . R 4 HOH C 27 310 310 HOH HOH . R 4 HOH C 28 312 312 HOH HOH . R 4 HOH C 29 313 313 HOH HOH . R 4 HOH C 30 314 314 HOH HOH . S 4 HOH D 1 229 55 HOH HOH . S 4 HOH D 2 230 108 HOH HOH . S 4 HOH D 3 231 111 HOH HOH . S 4 HOH D 4 232 118 HOH HOH . S 4 HOH D 5 233 159 HOH HOH . S 4 HOH D 6 234 167 HOH HOH . S 4 HOH D 7 235 222 HOH HOH . S 4 HOH D 8 236 236 HOH HOH . S 4 HOH D 9 291 291 HOH HOH . S 4 HOH D 10 295 295 HOH HOH . S 4 HOH D 11 296 296 HOH HOH . S 4 HOH D 12 298 298 HOH HOH . S 4 HOH D 13 317 317 HOH HOH . S 4 HOH D 14 329 329 HOH HOH . T 4 HOH E 1 228 9 HOH HOH . T 4 HOH E 2 229 11 HOH HOH . T 4 HOH E 3 230 12 HOH HOH . T 4 HOH E 4 231 16 HOH HOH . T 4 HOH E 5 232 31 HOH HOH . T 4 HOH E 6 233 35 HOH HOH . T 4 HOH E 7 234 42 HOH HOH . T 4 HOH E 8 235 45 HOH HOH . T 4 HOH E 9 236 50 HOH HOH . T 4 HOH E 10 237 60 HOH HOH . T 4 HOH E 11 238 61 HOH HOH . T 4 HOH E 12 239 68 HOH HOH . T 4 HOH E 13 240 240 HOH HOH . T 4 HOH E 14 241 71 HOH HOH . T 4 HOH E 15 242 242 HOH HOH . T 4 HOH E 16 243 74 HOH HOH . T 4 HOH E 17 244 78 HOH HOH . T 4 HOH E 18 245 79 HOH HOH . T 4 HOH E 19 246 84 HOH HOH . T 4 HOH E 20 247 247 HOH HOH . T 4 HOH E 21 248 103 HOH HOH . T 4 HOH E 22 249 106 HOH HOH . T 4 HOH E 23 250 107 HOH HOH . T 4 HOH E 24 251 110 HOH HOH . T 4 HOH E 25 252 113 HOH HOH . T 4 HOH E 26 253 125 HOH HOH . T 4 HOH E 27 254 130 HOH HOH . T 4 HOH E 28 255 134 HOH HOH . T 4 HOH E 29 256 135 HOH HOH . T 4 HOH E 30 257 156 HOH HOH . T 4 HOH E 31 258 180 HOH HOH . T 4 HOH E 32 259 204 HOH HOH . T 4 HOH E 33 260 213 HOH HOH . T 4 HOH E 34 261 220 HOH HOH . T 4 HOH E 35 262 18 HOH HOH . T 4 HOH E 36 263 23 HOH HOH . T 4 HOH E 37 268 268 HOH HOH . T 4 HOH E 38 275 275 HOH HOH . T 4 HOH E 39 281 281 HOH HOH . T 4 HOH E 40 297 297 HOH HOH . T 4 HOH E 41 319 319 HOH HOH . T 4 HOH E 42 320 320 HOH HOH . T 4 HOH E 43 322 322 HOH HOH . T 4 HOH E 44 323 323 HOH HOH . T 4 HOH E 45 324 324 HOH HOH . U 4 HOH F 1 229 4 HOH HOH . U 4 HOH F 2 230 10 HOH HOH . U 4 HOH F 3 231 36 HOH HOH . U 4 HOH F 4 232 43 HOH HOH . U 4 HOH F 5 233 44 HOH HOH . U 4 HOH F 6 234 76 HOH HOH . U 4 HOH F 7 235 100 HOH HOH . U 4 HOH F 8 236 117 HOH HOH . U 4 HOH F 9 237 122 HOH HOH . U 4 HOH F 10 238 181 HOH HOH . U 4 HOH F 11 239 184 HOH HOH . U 4 HOH F 12 240 187 HOH HOH . U 4 HOH F 13 241 223 HOH HOH . U 4 HOH F 14 242 2 HOH HOH . U 4 HOH F 15 243 6 HOH HOH . U 4 HOH F 16 244 7 HOH HOH . U 4 HOH F 17 245 8 HOH HOH . U 4 HOH F 18 293 293 HOH HOH . U 4 HOH F 19 325 325 HOH HOH . U 4 HOH F 20 326 326 HOH HOH . U 4 HOH F 21 327 327 HOH HOH . U 4 HOH F 22 328 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . J 2 -12.176 26.818 6.289 1 28.73 ? P CMP 301 C 1 HETATM 2 O O1P CMP . . . J 2 -13.655 26.782 6.417 1 30.75 ? O1P CMP 301 C 1 HETATM 3 O O2P CMP . . . J 2 -11.488 27.945 6.896 1 24.92 ? O2P CMP 301 C 1 HETATM 4 O O5' CMP . . . J 2 -11.624 25.406 6.83 1 29.21 ? O5' CMP 301 C 1 HETATM 5 C C5' CMP . . . J 2 -12.016 24.191 6.155 1 23.9 ? C5' CMP 301 C 1 HETATM 6 C C4' CMP . . . J 2 -11.469 24.264 4.761 1 23.95 ? C4' CMP 301 C 1 HETATM 7 O O4' CMP . . . J 2 -11.882 23.256 3.854 1 24.86 ? O4' CMP 301 C 1 HETATM 8 C C3' CMP . . . J 2 -12.231 25.46 4.201 1 24.3 ? C3' CMP 301 C 1 HETATM 9 O O3' CMP . . . J 2 -11.795 26.652 4.785 1 24.27 ? O3' CMP 301 C 1 HETATM 10 C C2' CMP . . . J 2 -11.81 25.362 2.748 1 23.14 ? C2' CMP 301 C 1 HETATM 11 O O2' CMP . . . J 2 -10.448 25.758 2.568 1 24.62 ? O2' CMP 301 C 1 HETATM 12 C C1' CMP . . . J 2 -11.937 23.853 2.535 1 24.88 ? C1' CMP 301 C 1 HETATM 13 N N9 CMP . . . J 2 -13.273 23.74 1.974 1 29.31 ? N9 CMP 301 C 1 HETATM 14 C C8 CMP . . . J 2 -14.448 23.945 2.586 1 27.08 ? C8 CMP 301 C 1 HETATM 15 N N7 CMP . . . J 2 -15.423 23.807 1.688 1 26.74 ? N7 CMP 301 C 1 HETATM 16 C C5 CMP . . . J 2 -14.896 23.512 0.514 1 29.37 ? C5 CMP 301 C 1 HETATM 17 C C6 CMP . . . J 2 -15.425 23.272 -0.767 1 32.73 ? C6 CMP 301 C 1 HETATM 18 N N6 CMP . . . J 2 -16.746 23.249 -1.028 1 33.07 ? N6 CMP 301 C 1 HETATM 19 N N1 CMP . . . J 2 -14.562 23.013 -1.76 1 33.19 ? N1 CMP 301 C 1 HETATM 20 C C2 CMP . . . J 2 -13.241 23.006 -1.527 1 36.72 ? C2 CMP 301 C 1 HETATM 21 N N3 CMP . . . J 2 -12.709 23.259 -0.32 1 33.99 ? N3 CMP 301 C 1 HETATM 22 C C4 CMP . . . J 2 -13.523 23.492 0.702 1 30.2 ? C4 CMP 301 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 576 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #