data_3R6W # _model_server_result.job_id RyVUBUO0b8t59b52zQA_sw _model_server_result.datetime_utc '2024-11-04 23:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":213}' # _entry.id 3R6W # _exptl.entry_id 3R6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R6W _cell.length_a 82.202 _cell.length_b 82.202 _cell.length_c 108.462 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 72.308 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 3R6W _atom_sites.fract_transf_matrix[1][1] 0.012165 _atom_sites.fract_transf_matrix[1][2] 0.007024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1213 1213 FMN FMN . D 3 NFZ A 1 213 213 NFZ NFZ . E 3 NFZ A 1 214 214 NFZ NFZ . F 4 SO4 A 1 215 215 SO4 SO4 . G 5 GOL A 1 216 216 GOL GOL . H 5 GOL A 1 217 217 GOL GOL . I 5 GOL A 1 218 218 GOL GOL . J 5 GOL A 1 219 219 GOL GOL . K 5 GOL A 1 220 220 GOL GOL . L 2 FMN B 1 1213 1213 FMN FMN . M 5 GOL B 1 213 213 GOL GOL . N 5 GOL B 1 214 214 GOL GOL . O 6 HOH A 1 221 221 HOH HOH . O 6 HOH A 2 222 222 HOH HOH . O 6 HOH A 3 223 223 HOH HOH . O 6 HOH A 4 224 224 HOH HOH . O 6 HOH A 5 225 225 HOH HOH . O 6 HOH A 6 226 226 HOH HOH . O 6 HOH A 7 227 227 HOH HOH . O 6 HOH A 8 228 228 HOH HOH . O 6 HOH A 9 229 229 HOH HOH . O 6 HOH A 10 230 230 HOH HOH . O 6 HOH A 11 231 231 HOH HOH . O 6 HOH A 12 232 232 HOH HOH . O 6 HOH A 13 233 233 HOH HOH . O 6 HOH A 14 234 234 HOH HOH . O 6 HOH A 15 235 235 HOH HOH . O 6 HOH A 16 236 236 HOH HOH . O 6 HOH A 17 237 237 HOH HOH . O 6 HOH A 18 238 238 HOH HOH . O 6 HOH A 19 239 239 HOH HOH . O 6 HOH A 20 240 240 HOH HOH . O 6 HOH A 21 241 241 HOH HOH . O 6 HOH A 22 242 242 HOH HOH . O 6 HOH A 23 243 243 HOH HOH . O 6 HOH A 24 244 244 HOH HOH . O 6 HOH A 25 245 245 HOH HOH . O 6 HOH A 26 246 246 HOH HOH . O 6 HOH A 27 247 247 HOH HOH . O 6 HOH A 28 248 248 HOH HOH . O 6 HOH A 29 249 249 HOH HOH . O 6 HOH A 30 250 250 HOH HOH . O 6 HOH A 31 251 251 HOH HOH . O 6 HOH A 32 252 252 HOH HOH . O 6 HOH A 33 253 253 HOH HOH . O 6 HOH A 34 254 254 HOH HOH . O 6 HOH A 35 255 255 HOH HOH . O 6 HOH A 36 256 256 HOH HOH . O 6 HOH A 37 257 257 HOH HOH . O 6 HOH A 38 258 258 HOH HOH . O 6 HOH A 39 259 259 HOH HOH . O 6 HOH A 40 260 260 HOH HOH . O 6 HOH A 41 261 261 HOH HOH . O 6 HOH A 42 262 262 HOH HOH . O 6 HOH A 43 263 263 HOH HOH . O 6 HOH A 44 264 264 HOH HOH . O 6 HOH A 45 265 265 HOH HOH . O 6 HOH A 46 266 266 HOH HOH . O 6 HOH A 47 267 267 HOH HOH . O 6 HOH A 48 268 268 HOH HOH . O 6 HOH A 49 269 269 HOH HOH . O 6 HOH A 50 270 270 HOH HOH . O 6 HOH A 51 271 271 HOH HOH . O 6 HOH A 52 272 272 HOH HOH . O 6 HOH A 53 273 273 HOH HOH . O 6 HOH A 54 274 274 HOH HOH . O 6 HOH A 55 275 275 HOH HOH . O 6 HOH A 56 276 276 HOH HOH . O 6 HOH A 57 277 277 HOH HOH . O 6 HOH A 58 278 278 HOH HOH . O 6 HOH A 59 279 279 HOH HOH . O 6 HOH A 60 280 280 HOH HOH . O 6 HOH A 61 281 281 HOH HOH . O 6 HOH A 62 282 282 HOH HOH . O 6 HOH A 63 283 283 HOH HOH . O 6 HOH A 64 284 284 HOH HOH . O 6 HOH A 65 285 285 HOH HOH . O 6 HOH A 66 286 286 HOH HOH . O 6 HOH A 67 287 287 HOH HOH . O 6 HOH A 68 288 288 HOH HOH . O 6 HOH A 69 289 289 HOH HOH . O 6 HOH A 70 290 290 HOH HOH . O 6 HOH A 71 291 291 HOH HOH . O 6 HOH A 72 292 292 HOH HOH . O 6 HOH A 73 293 293 HOH HOH . O 6 HOH A 74 294 294 HOH HOH . O 6 HOH A 75 295 295 HOH HOH . O 6 HOH A 76 296 296 HOH HOH . O 6 HOH A 77 297 297 HOH HOH . O 6 HOH A 78 298 298 HOH HOH . O 6 HOH A 79 299 299 HOH HOH . O 6 HOH A 80 300 300 HOH HOH . O 6 HOH A 81 301 301 HOH HOH . O 6 HOH A 82 302 302 HOH HOH . O 6 HOH A 83 303 303 HOH HOH . O 6 HOH A 84 304 304 HOH HOH . O 6 HOH A 85 305 305 HOH HOH . O 6 HOH A 86 306 306 HOH HOH . O 6 HOH A 87 307 307 HOH HOH . O 6 HOH A 88 308 308 HOH HOH . O 6 HOH A 89 309 309 HOH HOH . O 6 HOH A 90 310 310 HOH HOH . O 6 HOH A 91 311 311 HOH HOH . O 6 HOH A 92 312 312 HOH HOH . O 6 HOH A 93 313 313 HOH HOH . O 6 HOH A 94 314 314 HOH HOH . O 6 HOH A 95 315 315 HOH HOH . O 6 HOH A 96 316 316 HOH HOH . O 6 HOH A 97 317 317 HOH HOH . O 6 HOH A 98 318 318 HOH HOH . O 6 HOH A 99 319 319 HOH HOH . O 6 HOH A 100 320 320 HOH HOH . O 6 HOH A 101 321 321 HOH HOH . O 6 HOH A 102 322 322 HOH HOH . O 6 HOH A 103 323 323 HOH HOH . O 6 HOH A 104 324 324 HOH HOH . O 6 HOH A 105 325 325 HOH HOH . O 6 HOH A 106 326 326 HOH HOH . O 6 HOH A 107 327 327 HOH HOH . O 6 HOH A 108 328 328 HOH HOH . O 6 HOH A 109 329 329 HOH HOH . O 6 HOH A 110 330 330 HOH HOH . O 6 HOH A 111 331 331 HOH HOH . O 6 HOH A 112 332 332 HOH HOH . O 6 HOH A 113 333 333 HOH HOH . O 6 HOH A 114 334 334 HOH HOH . O 6 HOH A 115 335 335 HOH HOH . O 6 HOH A 116 336 336 HOH HOH . O 6 HOH A 117 337 337 HOH HOH . O 6 HOH A 118 338 338 HOH HOH . O 6 HOH A 119 339 339 HOH HOH . O 6 HOH A 120 340 340 HOH HOH . O 6 HOH A 121 341 341 HOH HOH . O 6 HOH A 122 342 342 HOH HOH . O 6 HOH A 123 343 343 HOH HOH . O 6 HOH A 124 344 344 HOH HOH . O 6 HOH A 125 345 345 HOH HOH . O 6 HOH A 126 346 346 HOH HOH . O 6 HOH A 127 347 347 HOH HOH . O 6 HOH A 128 348 348 HOH HOH . O 6 HOH A 129 349 349 HOH HOH . O 6 HOH A 130 350 350 HOH HOH . O 6 HOH A 131 351 351 HOH HOH . O 6 HOH A 132 352 352 HOH HOH . O 6 HOH A 133 353 353 HOH HOH . O 6 HOH A 134 354 354 HOH HOH . O 6 HOH A 135 355 355 HOH HOH . O 6 HOH A 136 356 356 HOH HOH . O 6 HOH A 137 357 357 HOH HOH . O 6 HOH A 138 358 358 HOH HOH . O 6 HOH A 139 359 359 HOH HOH . O 6 HOH A 140 360 360 HOH HOH . O 6 HOH A 141 361 361 HOH HOH . O 6 HOH A 142 362 362 HOH HOH . O 6 HOH A 143 363 363 HOH HOH . O 6 HOH A 144 364 364 HOH HOH . O 6 HOH A 145 365 365 HOH HOH . P 6 HOH B 1 215 215 HOH HOH . P 6 HOH B 2 216 216 HOH HOH . P 6 HOH B 3 217 217 HOH HOH . P 6 HOH B 4 218 218 HOH HOH . P 6 HOH B 5 219 219 HOH HOH . P 6 HOH B 6 220 220 HOH HOH . P 6 HOH B 7 221 221 HOH HOH . P 6 HOH B 8 222 222 HOH HOH . P 6 HOH B 9 223 223 HOH HOH . P 6 HOH B 10 224 224 HOH HOH . P 6 HOH B 11 225 225 HOH HOH . P 6 HOH B 12 226 226 HOH HOH . P 6 HOH B 13 227 227 HOH HOH . P 6 HOH B 14 228 228 HOH HOH . P 6 HOH B 15 229 229 HOH HOH . P 6 HOH B 16 230 230 HOH HOH . P 6 HOH B 17 231 231 HOH HOH . P 6 HOH B 18 232 232 HOH HOH . P 6 HOH B 19 233 233 HOH HOH . P 6 HOH B 20 234 234 HOH HOH . P 6 HOH B 21 235 235 HOH HOH . P 6 HOH B 22 236 236 HOH HOH . P 6 HOH B 23 237 237 HOH HOH . P 6 HOH B 24 238 238 HOH HOH . P 6 HOH B 25 239 239 HOH HOH . P 6 HOH B 26 240 240 HOH HOH . P 6 HOH B 27 241 241 HOH HOH . P 6 HOH B 28 242 242 HOH HOH . P 6 HOH B 29 243 243 HOH HOH . P 6 HOH B 30 244 244 HOH HOH . P 6 HOH B 31 245 245 HOH HOH . P 6 HOH B 32 246 246 HOH HOH . P 6 HOH B 33 247 247 HOH HOH . P 6 HOH B 34 248 248 HOH HOH . P 6 HOH B 35 249 249 HOH HOH . P 6 HOH B 36 250 250 HOH HOH . P 6 HOH B 37 251 251 HOH HOH . P 6 HOH B 38 252 252 HOH HOH . P 6 HOH B 39 253 253 HOH HOH . P 6 HOH B 40 254 254 HOH HOH . P 6 HOH B 41 255 255 HOH HOH . P 6 HOH B 42 256 256 HOH HOH . P 6 HOH B 43 257 257 HOH HOH . P 6 HOH B 44 258 258 HOH HOH . P 6 HOH B 45 259 259 HOH HOH . P 6 HOH B 46 260 260 HOH HOH . P 6 HOH B 47 261 261 HOH HOH . P 6 HOH B 48 262 262 HOH HOH . P 6 HOH B 49 263 263 HOH HOH . P 6 HOH B 50 264 264 HOH HOH . P 6 HOH B 51 265 265 HOH HOH . P 6 HOH B 52 266 266 HOH HOH . P 6 HOH B 53 267 267 HOH HOH . P 6 HOH B 54 268 268 HOH HOH . P 6 HOH B 55 269 269 HOH HOH . P 6 HOH B 56 270 270 HOH HOH . P 6 HOH B 57 271 271 HOH HOH . P 6 HOH B 58 272 272 HOH HOH . P 6 HOH B 59 273 273 HOH HOH . P 6 HOH B 60 274 274 HOH HOH . P 6 HOH B 61 275 275 HOH HOH . P 6 HOH B 62 276 276 HOH HOH . P 6 HOH B 63 277 277 HOH HOH . P 6 HOH B 64 278 278 HOH HOH . P 6 HOH B 65 279 279 HOH HOH . P 6 HOH B 66 280 280 HOH HOH . P 6 HOH B 67 281 281 HOH HOH . P 6 HOH B 68 282 282 HOH HOH . P 6 HOH B 69 283 283 HOH HOH . P 6 HOH B 70 284 284 HOH HOH . P 6 HOH B 71 285 285 HOH HOH . P 6 HOH B 72 286 286 HOH HOH . P 6 HOH B 73 287 287 HOH HOH . P 6 HOH B 74 288 288 HOH HOH . P 6 HOH B 75 289 289 HOH HOH . P 6 HOH B 76 290 290 HOH HOH . P 6 HOH B 77 291 291 HOH HOH . P 6 HOH B 78 292 292 HOH HOH . P 6 HOH B 79 293 293 HOH HOH . P 6 HOH B 80 294 294 HOH HOH . P 6 HOH B 81 295 295 HOH HOH . P 6 HOH B 82 296 296 HOH HOH . P 6 HOH B 83 297 297 HOH HOH . P 6 HOH B 84 298 298 HOH HOH . P 6 HOH B 85 299 299 HOH HOH . P 6 HOH B 86 300 300 HOH HOH . P 6 HOH B 87 301 301 HOH HOH . P 6 HOH B 88 302 302 HOH HOH . P 6 HOH B 89 303 303 HOH HOH . P 6 HOH B 90 304 304 HOH HOH . P 6 HOH B 91 305 305 HOH HOH . P 6 HOH B 92 306 306 HOH HOH . P 6 HOH B 93 307 307 HOH HOH . P 6 HOH B 94 308 308 HOH HOH . P 6 HOH B 95 309 309 HOH HOH . P 6 HOH B 96 310 310 HOH HOH . P 6 HOH B 97 311 311 HOH HOH . P 6 HOH B 98 312 312 HOH HOH . P 6 HOH B 99 313 313 HOH HOH . P 6 HOH B 100 314 314 HOH HOH . P 6 HOH B 101 315 315 HOH HOH . P 6 HOH B 102 316 316 HOH HOH . P 6 HOH B 103 317 317 HOH HOH . P 6 HOH B 104 318 318 HOH HOH . P 6 HOH B 105 319 319 HOH HOH . P 6 HOH B 106 320 320 HOH HOH . P 6 HOH B 107 321 321 HOH HOH . P 6 HOH B 108 322 322 HOH HOH . P 6 HOH B 109 323 323 HOH HOH . P 6 HOH B 110 324 324 HOH HOH . P 6 HOH B 111 325 325 HOH HOH . P 6 HOH B 112 326 326 HOH HOH . P 6 HOH B 113 327 327 HOH HOH . P 6 HOH B 114 328 328 HOH HOH . P 6 HOH B 115 329 329 HOH HOH . P 6 HOH B 116 330 330 HOH HOH . P 6 HOH B 117 331 331 HOH HOH . P 6 HOH B 118 332 332 HOH HOH . P 6 HOH B 119 333 333 HOH HOH . P 6 HOH B 120 334 334 HOH HOH . P 6 HOH B 121 335 335 HOH HOH . P 6 HOH B 122 336 336 HOH HOH . P 6 HOH B 123 337 337 HOH HOH . P 6 HOH B 124 338 338 HOH HOH . P 6 HOH B 125 339 339 HOH HOH . P 6 HOH B 126 340 340 HOH HOH . P 6 HOH B 127 341 341 HOH HOH . P 6 HOH B 128 342 342 HOH HOH . P 6 HOH B 129 343 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 5 55.67 -19.273 46.755 1 53.49 ? C1 GOL 213 B 1 HETATM 2 O O1 GOL . . . M 5 56.193 -19.243 45.437 1 35.67 ? O1 GOL 213 B 1 HETATM 3 C C2 GOL . . . M 5 54.215 -19.749 46.784 1 61.07 ? C2 GOL 213 B 1 HETATM 4 O O2 GOL . . . M 5 53.645 -19.394 48.028 1 63.79 ? O2 GOL 213 B 1 HETATM 5 C C3 GOL . . . M 5 54.156 -21.27 46.632 1 65.12 ? C3 GOL 213 B 1 HETATM 6 O O3 GOL . . . M 5 53.149 -21.627 45.709 1 62.14 ? O3 GOL 213 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #