data_3R6X # _model_server_result.job_id fER8uE5jqSCTJt9pnKWLxQ _model_server_result.datetime_utc '2025-04-07 04:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":778}' # _entry.id 3R6X # _exptl.entry_id 3R6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.353 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3-hydroxypropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R6X _cell.length_a 53.61 _cell.length_b 71.59 _cell.length_c 72.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N5 O4' _chem_comp.formula_weight 345.353 _chem_comp.id X84 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3-hydroxypropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C08 X84 sing 385 n n N01 C13 X84 sing 386 n n N01 HN01 X84 sing 387 n n N02 C12 X84 sing 388 n n N02 H102 X84 sing 389 n n N02 H202 X84 sing 390 n n N04 C19 X84 sing 391 n n N04 HN04 X84 sing 392 n n N05 O24 X84 sing 393 n n C06 C11 X84 sing 394 n y C06 H06 X84 sing 395 n n C07 C06 X84 doub 396 n y C07 C08 X84 sing 397 n y C08 C09 X84 doub 398 n y C09 C10 X84 sing 399 n y C09 H09 X84 sing 400 n n C10 N04 X84 sing 401 n n C11 N05 X84 sing 402 n n C11 C10 X84 doub 403 n y C12 C07 X84 sing 404 n n C13 C14 X84 sing 405 n n C13 H113 X84 sing 406 n n C13 H213 X84 sing 407 n n C14 C15 X84 sing 408 n y C15 N03 X84 doub 409 n y C15 H15 X84 sing 410 n n C16 N03 X84 sing 411 n y C16 H16 X84 sing 412 n n C17 C16 X84 doub 413 n y C17 H17 X84 sing 414 n n C18 C14 X84 doub 415 n y C18 C17 X84 sing 416 n y C18 H18 X84 sing 417 n n C19 C20 X84 sing 418 n n C19 H119 X84 sing 419 n n C19 H219 X84 sing 420 n n C20 C21 X84 sing 421 n n C20 H120 X84 sing 422 n n C20 H220 X84 sing 423 n n C21 O23 X84 sing 424 n n C21 H121 X84 sing 425 n n C21 H221 X84 sing 426 n n O22 C12 X84 doub 427 n n O23 HO23 X84 sing 428 n n O25 N05 X84 doub 429 n n # _atom_sites.entry_id 3R6X _atom_sites.fract_transf_matrix[1][1] 0.018653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 777 1 EDO EDO . C 3 X84 A 1 778 1 X84 X84 . D 4 HOH A 1 299 2 HOH HOH . D 4 HOH A 2 300 3 HOH HOH . D 4 HOH A 3 301 4 HOH HOH . D 4 HOH A 4 302 5 HOH HOH . D 4 HOH A 5 303 6 HOH HOH . D 4 HOH A 6 304 7 HOH HOH . D 4 HOH A 7 305 8 HOH HOH . D 4 HOH A 8 306 9 HOH HOH . D 4 HOH A 9 308 11 HOH HOH . D 4 HOH A 10 310 13 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 312 15 HOH HOH . D 4 HOH A 13 313 16 HOH HOH . D 4 HOH A 14 314 17 HOH HOH . D 4 HOH A 15 315 18 HOH HOH . D 4 HOH A 16 316 19 HOH HOH . D 4 HOH A 17 317 20 HOH HOH . D 4 HOH A 18 318 21 HOH HOH . D 4 HOH A 19 320 23 HOH HOH . D 4 HOH A 20 321 24 HOH HOH . D 4 HOH A 21 322 25 HOH HOH . D 4 HOH A 22 323 26 HOH HOH . D 4 HOH A 23 324 27 HOH HOH . D 4 HOH A 24 325 28 HOH HOH . D 4 HOH A 25 326 29 HOH HOH . D 4 HOH A 26 327 30 HOH HOH . D 4 HOH A 27 328 31 HOH HOH . D 4 HOH A 28 329 32 HOH HOH . D 4 HOH A 29 330 33 HOH HOH . D 4 HOH A 30 331 34 HOH HOH . D 4 HOH A 31 332 35 HOH HOH . D 4 HOH A 32 333 36 HOH HOH . D 4 HOH A 33 336 39 HOH HOH . D 4 HOH A 34 337 40 HOH HOH . D 4 HOH A 35 340 43 HOH HOH . D 4 HOH A 36 341 44 HOH HOH . D 4 HOH A 37 342 45 HOH HOH . D 4 HOH A 38 343 46 HOH HOH . D 4 HOH A 39 345 48 HOH HOH . D 4 HOH A 40 347 50 HOH HOH . D 4 HOH A 41 348 51 HOH HOH . D 4 HOH A 42 350 53 HOH HOH . D 4 HOH A 43 353 56 HOH HOH . D 4 HOH A 44 354 57 HOH HOH . D 4 HOH A 45 357 60 HOH HOH . D 4 HOH A 46 358 61 HOH HOH . D 4 HOH A 47 359 62 HOH HOH . D 4 HOH A 48 361 64 HOH HOH . D 4 HOH A 49 362 65 HOH HOH . D 4 HOH A 50 363 66 HOH HOH . D 4 HOH A 51 365 68 HOH HOH . D 4 HOH A 52 367 70 HOH HOH . D 4 HOH A 53 369 72 HOH HOH . D 4 HOH A 54 370 73 HOH HOH . D 4 HOH A 55 371 74 HOH HOH . D 4 HOH A 56 372 75 HOH HOH . D 4 HOH A 57 373 76 HOH HOH . D 4 HOH A 58 375 78 HOH HOH . D 4 HOH A 59 377 80 HOH HOH . D 4 HOH A 60 378 81 HOH HOH . D 4 HOH A 61 379 82 HOH HOH . D 4 HOH A 62 380 83 HOH HOH . D 4 HOH A 63 382 85 HOH HOH . D 4 HOH A 64 384 87 HOH HOH . D 4 HOH A 65 385 88 HOH HOH . D 4 HOH A 66 386 89 HOH HOH . D 4 HOH A 67 387 90 HOH HOH . D 4 HOH A 68 388 91 HOH HOH . D 4 HOH A 69 390 93 HOH HOH . D 4 HOH A 70 391 94 HOH HOH . D 4 HOH A 71 392 95 HOH HOH . D 4 HOH A 72 394 97 HOH HOH . D 4 HOH A 73 397 100 HOH HOH . D 4 HOH A 74 400 103 HOH HOH . D 4 HOH A 75 401 104 HOH HOH . D 4 HOH A 76 402 105 HOH HOH . D 4 HOH A 77 404 107 HOH HOH . D 4 HOH A 78 405 108 HOH HOH . D 4 HOH A 79 410 113 HOH HOH . D 4 HOH A 80 411 114 HOH HOH . D 4 HOH A 81 412 115 HOH HOH . D 4 HOH A 82 415 118 HOH HOH . D 4 HOH A 83 418 121 HOH HOH . D 4 HOH A 84 419 122 HOH HOH . D 4 HOH A 85 420 123 HOH HOH . D 4 HOH A 86 421 124 HOH HOH . D 4 HOH A 87 423 126 HOH HOH . D 4 HOH A 88 424 127 HOH HOH . D 4 HOH A 89 425 128 HOH HOH . D 4 HOH A 90 429 132 HOH HOH . D 4 HOH A 91 430 133 HOH HOH . D 4 HOH A 92 435 138 HOH HOH . D 4 HOH A 93 436 139 HOH HOH . D 4 HOH A 94 437 140 HOH HOH . D 4 HOH A 95 440 143 HOH HOH . D 4 HOH A 96 443 146 HOH HOH . D 4 HOH A 97 444 147 HOH HOH . D 4 HOH A 98 447 150 HOH HOH . D 4 HOH A 99 448 151 HOH HOH . D 4 HOH A 100 450 153 HOH HOH . D 4 HOH A 101 452 155 HOH HOH . D 4 HOH A 102 454 157 HOH HOH . D 4 HOH A 103 455 158 HOH HOH . D 4 HOH A 104 456 159 HOH HOH . D 4 HOH A 105 458 161 HOH HOH . D 4 HOH A 106 462 165 HOH HOH . D 4 HOH A 107 463 166 HOH HOH . D 4 HOH A 108 466 169 HOH HOH . D 4 HOH A 109 467 170 HOH HOH . D 4 HOH A 110 468 171 HOH HOH . D 4 HOH A 111 470 173 HOH HOH . D 4 HOH A 112 471 174 HOH HOH . D 4 HOH A 113 473 176 HOH HOH . D 4 HOH A 114 474 177 HOH HOH . D 4 HOH A 115 476 179 HOH HOH . D 4 HOH A 116 477 180 HOH HOH . D 4 HOH A 117 478 181 HOH HOH . D 4 HOH A 118 479 182 HOH HOH . D 4 HOH A 119 480 183 HOH HOH . D 4 HOH A 120 481 184 HOH HOH . D 4 HOH A 121 483 186 HOH HOH . D 4 HOH A 122 493 196 HOH HOH . D 4 HOH A 123 494 197 HOH HOH . D 4 HOH A 124 497 200 HOH HOH . D 4 HOH A 125 498 201 HOH HOH . D 4 HOH A 126 501 204 HOH HOH . D 4 HOH A 127 505 208 HOH HOH . D 4 HOH A 128 506 209 HOH HOH . D 4 HOH A 129 507 210 HOH HOH . D 4 HOH A 130 509 212 HOH HOH . D 4 HOH A 131 511 214 HOH HOH . D 4 HOH A 132 512 215 HOH HOH . D 4 HOH A 133 515 218 HOH HOH . D 4 HOH A 134 517 220 HOH HOH . D 4 HOH A 135 520 223 HOH HOH . D 4 HOH A 136 522 225 HOH HOH . D 4 HOH A 137 525 228 HOH HOH . D 4 HOH A 138 526 229 HOH HOH . D 4 HOH A 139 527 230 HOH HOH . D 4 HOH A 140 529 232 HOH HOH . D 4 HOH A 141 530 233 HOH HOH . D 4 HOH A 142 531 234 HOH HOH . D 4 HOH A 143 532 235 HOH HOH . D 4 HOH A 144 533 236 HOH HOH . D 4 HOH A 145 534 237 HOH HOH . D 4 HOH A 146 536 239 HOH HOH . D 4 HOH A 147 537 240 HOH HOH . D 4 HOH A 148 540 243 HOH HOH . D 4 HOH A 149 544 247 HOH HOH . D 4 HOH A 150 546 249 HOH HOH . D 4 HOH A 151 549 252 HOH HOH . D 4 HOH A 152 550 253 HOH HOH . D 4 HOH A 153 556 259 HOH HOH . D 4 HOH A 154 563 266 HOH HOH . D 4 HOH A 155 565 268 HOH HOH . D 4 HOH A 156 567 270 HOH HOH . D 4 HOH A 157 568 271 HOH HOH . D 4 HOH A 158 569 272 HOH HOH . D 4 HOH A 159 570 273 HOH HOH . D 4 HOH A 160 581 284 HOH HOH . D 4 HOH A 161 591 294 HOH HOH . D 4 HOH A 162 592 295 HOH HOH . D 4 HOH A 163 593 296 HOH HOH . D 4 HOH A 164 595 298 HOH HOH . D 4 HOH A 165 606 309 HOH HOH . D 4 HOH A 166 631 334 HOH HOH . D 4 HOH A 167 632 335 HOH HOH . D 4 HOH A 168 638 341 HOH HOH . D 4 HOH A 169 644 347 HOH HOH . D 4 HOH A 170 646 349 HOH HOH . D 4 HOH A 171 647 350 HOH HOH . D 4 HOH A 172 648 351 HOH HOH . D 4 HOH A 173 649 352 HOH HOH . D 4 HOH A 174 651 354 HOH HOH . D 4 HOH A 175 652 355 HOH HOH . D 4 HOH A 176 653 356 HOH HOH . D 4 HOH A 177 654 357 HOH HOH . D 4 HOH A 178 674 377 HOH HOH . D 4 HOH A 179 676 379 HOH HOH . D 4 HOH A 180 677 380 HOH HOH . D 4 HOH A 181 694 397 HOH HOH . D 4 HOH A 182 703 406 HOH HOH . D 4 HOH A 183 704 407 HOH HOH . D 4 HOH A 184 707 410 HOH HOH . D 4 HOH A 185 708 411 HOH HOH . D 4 HOH A 186 709 412 HOH HOH . D 4 HOH A 187 717 420 HOH HOH . D 4 HOH A 188 729 432 HOH HOH . D 4 HOH A 189 734 437 HOH HOH . D 4 HOH A 190 745 448 HOH HOH . D 4 HOH A 191 746 449 HOH HOH . D 4 HOH A 192 747 450 HOH HOH . D 4 HOH A 193 749 452 HOH HOH . D 4 HOH A 194 750 453 HOH HOH . D 4 HOH A 195 752 455 HOH HOH . D 4 HOH A 196 754 457 HOH HOH . D 4 HOH A 197 755 458 HOH HOH . D 4 HOH A 198 756 459 HOH HOH . D 4 HOH A 199 757 460 HOH HOH . D 4 HOH A 200 758 461 HOH HOH . D 4 HOH A 201 759 462 HOH HOH . D 4 HOH A 202 760 463 HOH HOH . D 4 HOH A 203 761 464 HOH HOH . D 4 HOH A 204 762 465 HOH HOH . D 4 HOH A 205 763 466 HOH HOH . D 4 HOH A 206 764 467 HOH HOH . D 4 HOH A 207 765 468 HOH HOH . D 4 HOH A 208 766 469 HOH HOH . D 4 HOH A 209 767 470 HOH HOH . D 4 HOH A 210 768 471 HOH HOH . D 4 HOH A 211 769 472 HOH HOH . D 4 HOH A 212 770 473 HOH HOH . D 4 HOH A 213 771 474 HOH HOH . D 4 HOH A 214 773 476 HOH HOH . D 4 HOH A 215 774 477 HOH HOH . D 4 HOH A 216 775 478 HOH HOH . D 4 HOH A 217 776 479 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X84 . . . C 3 -64.099 -10.189 23.982 1 22.63 ? N01 X84 778 A 1 HETATM 2 N N02 X84 . . . C 3 -66.981 -9.966 21.052 1 18.38 ? N02 X84 778 A 1 HETATM 3 N N03 X84 . . . C 3 -62.025 -11.506 28.13 1 28.25 ? N03 X84 778 A 1 HETATM 4 N N04 X84 . . . C 3 -67.042 -8.18 27.115 1 34.42 ? N04 X84 778 A 1 HETATM 5 N N05 X84 . . . C 3 -69.128 -8.349 25.268 1 31.93 ? N05 X84 778 A 1 HETATM 6 C C06 X84 . . . C 3 -67.668 -9.347 23.711 1 27.23 ? C06 X84 778 A 1 HETATM 7 C C07 X84 . . . C 3 -66.37 -9.834 23.353 1 24.15 ? C07 X84 778 A 1 HETATM 8 C C08 X84 . . . C 3 -65.287 -9.747 24.303 1 25.03 ? C08 X84 778 A 1 HETATM 9 C C09 X84 . . . C 3 -65.544 -9.172 25.59 1 28.45 ? C09 X84 778 A 1 HETATM 10 C C10 X84 . . . C 3 -66.845 -8.686 25.947 1 30.59 ? C10 X84 778 A 1 HETATM 11 C C11 X84 . . . C 3 -67.928 -8.773 24.993 1 30.26 ? C11 X84 778 A 1 HETATM 12 C C12 X84 . . . C 3 -66.193 -10.377 22.097 1 21.51 ? C12 X84 778 A 1 HETATM 13 C C13 X84 . . . C 3 -62.852 -9.928 24.748 1 24.52 ? C13 X84 778 A 1 HETATM 14 C C14 X84 . . . C 3 -62.642 -10.976 25.823 1 25.22 ? C14 X84 778 A 1 HETATM 15 C C15 X84 . . . C 3 -62.229 -10.601 27.109 1 27.1 ? C15 X84 778 A 1 HETATM 16 C C16 X84 . . . C 3 -62.246 -12.841 27.859 1 27.4 ? C16 X84 778 A 1 HETATM 17 C C17 X84 . . . C 3 -62.662 -13.313 26.603 1 26.49 ? C17 X84 778 A 1 HETATM 18 C C18 X84 . . . C 3 -62.86 -12.362 25.575 1 25.92 ? C18 X84 778 A 1 HETATM 19 C C19 X84 . . . C 3 -66.012 -7.364 27.811 1 35.84 ? C19 X84 778 A 1 HETATM 20 C C20 X84 . . . C 3 -65.779 -7.941 29.203 1 39.97 ? C20 X84 778 A 1 HETATM 21 C C21 X84 . . . C 3 -64.295 -8.204 29.402 1 41.18 ? C21 X84 778 A 1 HETATM 22 O O22 X84 . . . C 3 -65.349 -11.219 21.899 1 19.08 ? O22 X84 778 A 1 HETATM 23 O O23 X84 . . . C 3 -64.125 -9.35 30.201 1 43.83 ? O23 X84 778 A 1 HETATM 24 O O24 X84 . . . C 3 -69.392 -7.735 26.395 1 35.16 ? O24 X84 778 A 1 HETATM 25 O O25 X84 . . . C 3 -70.12 -8.534 24.417 1 33.28 ? O25 X84 778 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 582 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #