data_3R71 # _model_server_result.job_id y11KZvPKuIw81pmtdcWgKQ _model_server_result.datetime_utc '2025-08-05 15:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 3R71 # _exptl.entry_id 3R71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.38 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3-methoxypropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R71 _cell.length_a 53.82 _cell.length_b 71.81 _cell.length_c 72.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N5 O4' _chem_comp.formula_weight 359.38 _chem_comp.id X86 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3-methoxypropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C08 X86 sing 385 n n N01 C13 X86 sing 386 n n N01 HN01 X86 sing 387 n n N02 C12 X86 sing 388 n n N02 H102 X86 sing 389 n n N02 H202 X86 sing 390 n n N03 C16 X86 doub 391 n y N04 C19 X86 sing 392 n n N04 HN04 X86 sing 393 n n N05 O24 X86 doub 394 n n C06 C11 X86 sing 395 n y C06 H06 X86 sing 396 n n C07 C06 X86 doub 397 n y C07 C08 X86 sing 398 n y C08 C09 X86 doub 399 n y C09 C10 X86 sing 400 n y C09 H09 X86 sing 401 n n C10 N04 X86 sing 402 n n C11 N05 X86 sing 403 n n C11 C10 X86 doub 404 n y C12 C07 X86 sing 405 n n C13 C14 X86 sing 406 n n C13 H113 X86 sing 407 n n C13 H213 X86 sing 408 n n C14 C18 X86 sing 409 n y C15 C14 X86 doub 410 n y C15 N03 X86 sing 411 n y C15 H15 X86 sing 412 n n C16 C17 X86 sing 413 n y C16 H16 X86 sing 414 n n C17 H17 X86 sing 415 n n C18 C17 X86 doub 416 n y C18 H18 X86 sing 417 n n C19 C20 X86 sing 418 n n C19 H119 X86 sing 419 n n C19 H219 X86 sing 420 n n C20 C21 X86 sing 421 n n C20 H120 X86 sing 422 n n C20 H220 X86 sing 423 n n C21 H121 X86 sing 424 n n C21 H221 X86 sing 425 n n C22 H122 X86 sing 426 n n C22 H222 X86 sing 427 n n C22 H322 X86 sing 428 n n O23 C12 X86 doub 429 n n O25 N05 X86 sing 430 n n O26 C22 X86 sing 431 n n O26 C21 X86 sing 432 n n # _atom_sites.entry_id 3R71 _atom_sites.fract_transf_matrix[1][1] 0.01858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 799 1 EDO EDO . C 3 X86 A 1 800 1 X86 X86 . D 4 HOH A 1 299 2 HOH HOH . D 4 HOH A 2 300 3 HOH HOH . D 4 HOH A 3 301 4 HOH HOH . D 4 HOH A 4 302 5 HOH HOH . D 4 HOH A 5 303 6 HOH HOH . D 4 HOH A 6 306 9 HOH HOH . D 4 HOH A 7 307 10 HOH HOH . D 4 HOH A 8 308 11 HOH HOH . D 4 HOH A 9 309 12 HOH HOH . D 4 HOH A 10 310 13 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 314 17 HOH HOH . D 4 HOH A 13 315 18 HOH HOH . D 4 HOH A 14 316 19 HOH HOH . D 4 HOH A 15 317 20 HOH HOH . D 4 HOH A 16 319 22 HOH HOH . D 4 HOH A 17 320 23 HOH HOH . D 4 HOH A 18 322 25 HOH HOH . D 4 HOH A 19 323 26 HOH HOH . D 4 HOH A 20 324 27 HOH HOH . D 4 HOH A 21 325 28 HOH HOH . D 4 HOH A 22 326 29 HOH HOH . D 4 HOH A 23 327 30 HOH HOH . D 4 HOH A 24 328 31 HOH HOH . D 4 HOH A 25 329 32 HOH HOH . D 4 HOH A 26 330 33 HOH HOH . D 4 HOH A 27 331 34 HOH HOH . D 4 HOH A 28 332 35 HOH HOH . D 4 HOH A 29 334 37 HOH HOH . D 4 HOH A 30 335 38 HOH HOH . D 4 HOH A 31 337 40 HOH HOH . D 4 HOH A 32 338 41 HOH HOH . D 4 HOH A 33 339 42 HOH HOH . D 4 HOH A 34 340 43 HOH HOH . D 4 HOH A 35 341 44 HOH HOH . D 4 HOH A 36 343 46 HOH HOH . D 4 HOH A 37 344 47 HOH HOH . D 4 HOH A 38 346 49 HOH HOH . D 4 HOH A 39 347 50 HOH HOH . D 4 HOH A 40 350 53 HOH HOH . D 4 HOH A 41 351 54 HOH HOH . D 4 HOH A 42 352 55 HOH HOH . D 4 HOH A 43 353 56 HOH HOH . D 4 HOH A 44 355 58 HOH HOH . D 4 HOH A 45 356 59 HOH HOH . D 4 HOH A 46 358 61 HOH HOH . D 4 HOH A 47 359 62 HOH HOH . D 4 HOH A 48 360 63 HOH HOH . D 4 HOH A 49 361 64 HOH HOH . D 4 HOH A 50 362 65 HOH HOH . D 4 HOH A 51 363 66 HOH HOH . D 4 HOH A 52 364 67 HOH HOH . D 4 HOH A 53 366 69 HOH HOH . D 4 HOH A 54 368 71 HOH HOH . D 4 HOH A 55 370 73 HOH HOH . D 4 HOH A 56 371 74 HOH HOH . D 4 HOH A 57 372 75 HOH HOH . D 4 HOH A 58 374 77 HOH HOH . D 4 HOH A 59 380 83 HOH HOH . D 4 HOH A 60 382 85 HOH HOH . D 4 HOH A 61 383 86 HOH HOH . D 4 HOH A 62 384 87 HOH HOH . D 4 HOH A 63 385 88 HOH HOH . D 4 HOH A 64 386 89 HOH HOH . D 4 HOH A 65 387 90 HOH HOH . D 4 HOH A 66 389 92 HOH HOH . D 4 HOH A 67 391 94 HOH HOH . D 4 HOH A 68 393 96 HOH HOH . D 4 HOH A 69 394 97 HOH HOH . D 4 HOH A 70 395 98 HOH HOH . D 4 HOH A 71 397 100 HOH HOH . D 4 HOH A 72 398 101 HOH HOH . D 4 HOH A 73 399 102 HOH HOH . D 4 HOH A 74 400 103 HOH HOH . D 4 HOH A 75 402 105 HOH HOH . D 4 HOH A 76 403 106 HOH HOH . D 4 HOH A 77 405 108 HOH HOH . D 4 HOH A 78 406 109 HOH HOH . D 4 HOH A 79 408 111 HOH HOH . D 4 HOH A 80 416 119 HOH HOH . D 4 HOH A 81 417 120 HOH HOH . D 4 HOH A 82 418 121 HOH HOH . D 4 HOH A 83 420 123 HOH HOH . D 4 HOH A 84 423 126 HOH HOH . D 4 HOH A 85 425 128 HOH HOH . D 4 HOH A 86 426 129 HOH HOH . D 4 HOH A 87 427 130 HOH HOH . D 4 HOH A 88 428 131 HOH HOH . D 4 HOH A 89 429 132 HOH HOH . D 4 HOH A 90 430 133 HOH HOH . D 4 HOH A 91 433 136 HOH HOH . D 4 HOH A 92 434 137 HOH HOH . D 4 HOH A 93 436 139 HOH HOH . D 4 HOH A 94 444 147 HOH HOH . D 4 HOH A 95 445 148 HOH HOH . D 4 HOH A 96 446 149 HOH HOH . D 4 HOH A 97 447 150 HOH HOH . D 4 HOH A 98 451 154 HOH HOH . D 4 HOH A 99 454 157 HOH HOH . D 4 HOH A 100 457 160 HOH HOH . D 4 HOH A 101 458 161 HOH HOH . D 4 HOH A 102 463 166 HOH HOH . D 4 HOH A 103 466 169 HOH HOH . D 4 HOH A 104 467 170 HOH HOH . D 4 HOH A 105 470 173 HOH HOH . D 4 HOH A 106 475 178 HOH HOH . D 4 HOH A 107 479 182 HOH HOH . D 4 HOH A 108 480 183 HOH HOH . D 4 HOH A 109 481 184 HOH HOH . D 4 HOH A 110 482 185 HOH HOH . D 4 HOH A 111 483 186 HOH HOH . D 4 HOH A 112 484 187 HOH HOH . D 4 HOH A 113 485 188 HOH HOH . D 4 HOH A 114 486 189 HOH HOH . D 4 HOH A 115 487 190 HOH HOH . D 4 HOH A 116 491 194 HOH HOH . D 4 HOH A 117 493 196 HOH HOH . D 4 HOH A 118 494 197 HOH HOH . D 4 HOH A 119 495 198 HOH HOH . D 4 HOH A 120 499 202 HOH HOH . D 4 HOH A 121 500 203 HOH HOH . D 4 HOH A 122 501 204 HOH HOH . D 4 HOH A 123 503 206 HOH HOH . D 4 HOH A 124 504 207 HOH HOH . D 4 HOH A 125 507 210 HOH HOH . D 4 HOH A 126 508 211 HOH HOH . D 4 HOH A 127 509 212 HOH HOH . D 4 HOH A 128 513 216 HOH HOH . D 4 HOH A 129 515 218 HOH HOH . D 4 HOH A 130 516 219 HOH HOH . D 4 HOH A 131 517 220 HOH HOH . D 4 HOH A 132 518 221 HOH HOH . D 4 HOH A 133 519 222 HOH HOH . D 4 HOH A 134 520 223 HOH HOH . D 4 HOH A 135 526 229 HOH HOH . D 4 HOH A 136 527 230 HOH HOH . D 4 HOH A 137 530 233 HOH HOH . D 4 HOH A 138 531 234 HOH HOH . D 4 HOH A 139 535 238 HOH HOH . D 4 HOH A 140 536 239 HOH HOH . D 4 HOH A 141 538 241 HOH HOH . D 4 HOH A 142 546 249 HOH HOH . D 4 HOH A 143 547 250 HOH HOH . D 4 HOH A 144 549 252 HOH HOH . D 4 HOH A 145 550 253 HOH HOH . D 4 HOH A 146 551 254 HOH HOH . D 4 HOH A 147 552 255 HOH HOH . D 4 HOH A 148 558 261 HOH HOH . D 4 HOH A 149 559 262 HOH HOH . D 4 HOH A 150 560 263 HOH HOH . D 4 HOH A 151 561 264 HOH HOH . D 4 HOH A 152 562 265 HOH HOH . D 4 HOH A 153 565 268 HOH HOH . D 4 HOH A 154 568 271 HOH HOH . D 4 HOH A 155 570 273 HOH HOH . D 4 HOH A 156 575 278 HOH HOH . D 4 HOH A 157 577 280 HOH HOH . D 4 HOH A 158 579 282 HOH HOH . D 4 HOH A 159 581 284 HOH HOH . D 4 HOH A 160 585 288 HOH HOH . D 4 HOH A 161 586 289 HOH HOH . D 4 HOH A 162 588 291 HOH HOH . D 4 HOH A 163 589 292 HOH HOH . D 4 HOH A 164 590 293 HOH HOH . D 4 HOH A 165 591 294 HOH HOH . D 4 HOH A 166 593 296 HOH HOH . D 4 HOH A 167 595 298 HOH HOH . D 4 HOH A 168 596 299 HOH HOH . D 4 HOH A 169 599 302 HOH HOH . D 4 HOH A 170 600 303 HOH HOH . D 4 HOH A 171 619 322 HOH HOH . D 4 HOH A 172 625 328 HOH HOH . D 4 HOH A 173 626 329 HOH HOH . D 4 HOH A 174 638 341 HOH HOH . D 4 HOH A 175 640 343 HOH HOH . D 4 HOH A 176 644 347 HOH HOH . D 4 HOH A 177 646 349 HOH HOH . D 4 HOH A 178 648 351 HOH HOH . D 4 HOH A 179 649 352 HOH HOH . D 4 HOH A 180 651 354 HOH HOH . D 4 HOH A 181 652 355 HOH HOH . D 4 HOH A 182 654 357 HOH HOH . D 4 HOH A 183 657 360 HOH HOH . D 4 HOH A 184 666 369 HOH HOH . D 4 HOH A 185 670 373 HOH HOH . D 4 HOH A 186 678 381 HOH HOH . D 4 HOH A 187 680 383 HOH HOH . D 4 HOH A 188 681 384 HOH HOH . D 4 HOH A 189 684 387 HOH HOH . D 4 HOH A 190 686 389 HOH HOH . D 4 HOH A 191 688 391 HOH HOH . D 4 HOH A 192 690 393 HOH HOH . D 4 HOH A 193 691 394 HOH HOH . D 4 HOH A 194 700 403 HOH HOH . D 4 HOH A 195 703 406 HOH HOH . D 4 HOH A 196 705 408 HOH HOH . D 4 HOH A 197 713 416 HOH HOH . D 4 HOH A 198 715 418 HOH HOH . D 4 HOH A 199 716 419 HOH HOH . D 4 HOH A 200 717 420 HOH HOH . D 4 HOH A 201 722 425 HOH HOH . D 4 HOH A 202 727 430 HOH HOH . D 4 HOH A 203 735 438 HOH HOH . D 4 HOH A 204 741 444 HOH HOH . D 4 HOH A 205 745 448 HOH HOH . D 4 HOH A 206 747 450 HOH HOH . D 4 HOH A 207 748 451 HOH HOH . D 4 HOH A 208 749 452 HOH HOH . D 4 HOH A 209 751 454 HOH HOH . D 4 HOH A 210 752 455 HOH HOH . D 4 HOH A 211 753 456 HOH HOH . D 4 HOH A 212 756 459 HOH HOH . D 4 HOH A 213 757 460 HOH HOH . D 4 HOH A 214 758 461 HOH HOH . D 4 HOH A 215 761 464 HOH HOH . D 4 HOH A 216 762 465 HOH HOH . D 4 HOH A 217 763 466 HOH HOH . D 4 HOH A 218 764 467 HOH HOH . D 4 HOH A 219 765 468 HOH HOH . D 4 HOH A 220 766 469 HOH HOH . D 4 HOH A 221 769 472 HOH HOH . D 4 HOH A 222 770 473 HOH HOH . D 4 HOH A 223 771 474 HOH HOH . D 4 HOH A 224 772 475 HOH HOH . D 4 HOH A 225 773 476 HOH HOH . D 4 HOH A 226 774 477 HOH HOH . D 4 HOH A 227 775 478 HOH HOH . D 4 HOH A 228 776 479 HOH HOH . D 4 HOH A 229 778 481 HOH HOH . D 4 HOH A 230 779 482 HOH HOH . D 4 HOH A 231 781 484 HOH HOH . D 4 HOH A 232 782 485 HOH HOH . D 4 HOH A 233 783 486 HOH HOH . D 4 HOH A 234 785 488 HOH HOH . D 4 HOH A 235 786 489 HOH HOH . D 4 HOH A 236 788 491 HOH HOH . D 4 HOH A 237 789 492 HOH HOH . D 4 HOH A 238 790 493 HOH HOH . D 4 HOH A 239 792 495 HOH HOH . D 4 HOH A 240 793 496 HOH HOH . D 4 HOH A 241 794 497 HOH HOH . D 4 HOH A 242 795 498 HOH HOH . D 4 HOH A 243 796 499 HOH HOH . D 4 HOH A 244 797 500 HOH HOH . D 4 HOH A 245 798 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 X86 . . . C 3 63.872 46.249 -12.082 1 11.58 ? N01 X86 800 A 1 HETATM 2 N N02 X86 . . . C 3 67.137 46.247 -14.606 1 13.69 ? N02 X86 800 A 1 HETATM 3 N N03 X86 . . . C 3 62.639 49.394 -9.304 1 16.68 ? N03 X86 800 A 1 HETATM 4 N N04 X86 . . . C 3 66.419 44.023 -8.713 1 18.35 ? N04 X86 800 A 1 HETATM 5 N N05 X86 . . . C 3 68.677 44.368 -10.229 1 20.25 ? N05 X86 800 A 1 HETATM 6 C C06 X86 . . . C 3 67.447 45.453 -11.922 1 13.98 ? C06 X86 800 A 1 HETATM 7 C C07 X86 . . . C 3 66.205 45.952 -12.431 1 13.27 ? C07 X86 800 A 1 HETATM 8 C C08 X86 . . . C 3 65.02 45.794 -11.642 1 14.31 ? C08 X86 800 A 1 HETATM 9 C C09 X86 . . . C 3 65.118 45.123 -10.364 1 15.13 ? C09 X86 800 A 1 HETATM 10 C C10 X86 . . . C 3 66.353 44.625 -9.866 1 16.91 ? C10 X86 800 A 1 HETATM 11 C C11 X86 . . . C 3 67.535 44.794 -10.646 1 17.6 ? C11 X86 800 A 1 HETATM 12 C C12 X86 . . . C 3 66.185 46.567 -13.673 1 13.58 ? C12 X86 800 A 1 HETATM 13 C C13 X86 . . . C 3 62.567 46.14 -11.343 1 13.52 ? C13 X86 800 A 1 HETATM 14 C C14 X86 . . . C 3 62.476 47.118 -10.18 1 15.09 ? C14 X86 800 A 1 HETATM 15 C C15 X86 . . . C 3 62.714 48.503 -10.343 1 16.34 ? C15 X86 800 A 1 HETATM 16 C C16 X86 . . . C 3 62.318 48.91 -8.064 1 18.87 ? C16 X86 800 A 1 HETATM 17 C C17 X86 . . . C 3 62.065 47.552 -7.805 1 18.45 ? C17 X86 800 A 1 HETATM 18 C C18 X86 . . . C 3 62.15 46.656 -8.885 1 16.55 ? C18 X86 800 A 1 HETATM 19 C C19 X86 . . . C 3 65.249 43.861 -7.804 1 19.82 ? C19 X86 800 A 1 HETATM 20 C C20 X86 . . . C 3 65.61 42.874 -6.697 1 21 ? C20 X86 800 A 1 HETATM 21 C C21 X86 . . . C 3 66.476 43.582 -5.661 1 21.64 ? C21 X86 800 A 1 HETATM 22 C C22 X86 . . . C 3 68.632 44.68 -5.782 1 22.13 ? C22 X86 800 A 1 HETATM 23 O O23 X86 . . . C 3 65.317 47.373 -13.976 1 13.49 ? O23 X86 800 A 1 HETATM 24 O O24 X86 . . . C 3 68.816 43.806 -9.058 1 22.1 ? O24 X86 800 A 1 HETATM 25 O O25 X86 . . . C 3 69.756 44.524 -10.967 1 23.95 ? O25 X86 800 A 1 HETATM 26 O O26 X86 . . . C 3 67.797 43.611 -6.117 1 24.39 ? O26 X86 800 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #