data_3R76 # _model_server_result.job_id NfofmczwIDWBG3uKg4_trA _model_server_result.datetime_utc '2024-11-27 05:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":900}' # _entry.id 3R76 # _exptl.entry_id 3R76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R76 _cell.length_a 258.166 _cell.length_b 97.792 _cell.length_c 53.988 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 527 A VAL 525 1_555 A N CYG 528 A CYG 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C CYG 528 A CYG 526 1_555 A N LEU 529 A LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C VAL 527 B VAL 525 1_555 B N CYG 528 B CYG 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale4 B C CYG 528 B CYG 526 1_555 B N LEU 529 B LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OE1 GLU 246 A GLU 244 1_555 C MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A OE2 GLU 384 A GLU 382 1_555 C MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 K O HOH . A HOH 657 1_555 C MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 K O HOH . A HOH 668 1_555 C MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc5 C MG MG . A MG 700 1_555 D O1 BEZ . A BEZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 C MG MG . A MG 700 1_555 D O2 BEZ . A BEZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B OE1 GLU 246 B GLU 244 1_555 G MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc8 B OE2 GLU 384 B GLU 382 1_555 G MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc9 L O HOH . B HOH 663 1_555 G MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc10 L O HOH . B HOH 692 1_555 G MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc11 G MG MG . B MG 700 1_555 H O1 BEZ . B BEZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc12 G MG MG . B MG 700 1_555 H O2 BEZ . B BEZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 304 n n P O2 PO4 sing 305 n n P O3 PO4 sing 306 n n P O4 PO4 sing 307 n n # _atom_sites.entry_id 3R76 _atom_sites.fract_transf_matrix[1][1] 0.003873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 700 700 MG MG . D 3 BEZ A 1 701 701 BEZ BEZ . E 4 PYR A 1 702 702 PYR PYR . F 5 PO4 A 1 900 900 PO4 PO4 . G 2 MG B 1 700 700 MG MG . H 3 BEZ B 1 701 701 BEZ BEZ . I 4 PYR B 1 702 702 PYR PYR . J 5 PO4 B 1 900 900 PO4 PO4 . K 6 HOH A 1 644 644 HOH HOH . K 6 HOH A 2 645 645 HOH HOH . K 6 HOH A 3 646 646 HOH HOH . K 6 HOH A 4 647 647 HOH HOH . K 6 HOH A 5 648 648 HOH HOH . K 6 HOH A 6 649 649 HOH HOH . K 6 HOH A 7 650 650 HOH HOH . K 6 HOH A 8 651 651 HOH HOH . K 6 HOH A 9 652 652 HOH HOH . K 6 HOH A 10 653 653 HOH HOH . K 6 HOH A 11 654 654 HOH HOH . K 6 HOH A 12 655 655 HOH HOH . K 6 HOH A 13 656 656 HOH HOH . K 6 HOH A 14 657 657 HOH HOH . K 6 HOH A 15 658 658 HOH HOH . K 6 HOH A 16 659 659 HOH HOH . K 6 HOH A 17 660 660 HOH HOH . K 6 HOH A 18 661 661 HOH HOH . K 6 HOH A 19 662 662 HOH HOH . K 6 HOH A 20 663 663 HOH HOH . K 6 HOH A 21 664 664 HOH HOH . K 6 HOH A 22 665 665 HOH HOH . K 6 HOH A 23 666 666 HOH HOH . K 6 HOH A 24 667 667 HOH HOH . K 6 HOH A 25 668 668 HOH HOH . K 6 HOH A 26 669 669 HOH HOH . K 6 HOH A 27 670 670 HOH HOH . K 6 HOH A 28 671 671 HOH HOH . K 6 HOH A 29 672 672 HOH HOH . K 6 HOH A 30 673 673 HOH HOH . K 6 HOH A 31 674 674 HOH HOH . K 6 HOH A 32 675 675 HOH HOH . K 6 HOH A 33 676 676 HOH HOH . K 6 HOH A 34 677 677 HOH HOH . K 6 HOH A 35 678 678 HOH HOH . K 6 HOH A 36 679 679 HOH HOH . K 6 HOH A 37 680 680 HOH HOH . K 6 HOH A 38 681 681 HOH HOH . K 6 HOH A 39 682 682 HOH HOH . K 6 HOH A 40 683 683 HOH HOH . K 6 HOH A 41 684 684 HOH HOH . K 6 HOH A 42 685 685 HOH HOH . K 6 HOH A 43 686 686 HOH HOH . K 6 HOH A 44 687 687 HOH HOH . K 6 HOH A 45 688 688 HOH HOH . K 6 HOH A 46 689 689 HOH HOH . K 6 HOH A 47 690 690 HOH HOH . K 6 HOH A 48 691 691 HOH HOH . K 6 HOH A 49 692 692 HOH HOH . K 6 HOH A 50 693 693 HOH HOH . K 6 HOH A 51 694 694 HOH HOH . K 6 HOH A 52 695 695 HOH HOH . K 6 HOH A 53 696 696 HOH HOH . K 6 HOH A 54 697 697 HOH HOH . K 6 HOH A 55 698 698 HOH HOH . K 6 HOH A 56 699 699 HOH HOH . K 6 HOH A 57 703 703 HOH HOH . K 6 HOH A 58 704 704 HOH HOH . K 6 HOH A 59 705 705 HOH HOH . K 6 HOH A 60 706 706 HOH HOH . K 6 HOH A 61 707 707 HOH HOH . K 6 HOH A 62 708 708 HOH HOH . K 6 HOH A 63 709 709 HOH HOH . K 6 HOH A 64 710 710 HOH HOH . K 6 HOH A 65 711 711 HOH HOH . K 6 HOH A 66 712 712 HOH HOH . K 6 HOH A 67 713 713 HOH HOH . K 6 HOH A 68 714 714 HOH HOH . K 6 HOH A 69 715 715 HOH HOH . K 6 HOH A 70 716 716 HOH HOH . K 6 HOH A 71 717 717 HOH HOH . K 6 HOH A 72 718 718 HOH HOH . K 6 HOH A 73 719 719 HOH HOH . K 6 HOH A 74 720 720 HOH HOH . K 6 HOH A 75 721 721 HOH HOH . K 6 HOH A 76 722 722 HOH HOH . K 6 HOH A 77 723 723 HOH HOH . K 6 HOH A 78 724 724 HOH HOH . K 6 HOH A 79 725 725 HOH HOH . K 6 HOH A 80 726 726 HOH HOH . K 6 HOH A 81 727 727 HOH HOH . K 6 HOH A 82 728 728 HOH HOH . K 6 HOH A 83 729 729 HOH HOH . K 6 HOH A 84 730 730 HOH HOH . K 6 HOH A 85 731 731 HOH HOH . K 6 HOH A 86 732 732 HOH HOH . K 6 HOH A 87 733 733 HOH HOH . K 6 HOH A 88 734 734 HOH HOH . K 6 HOH A 89 735 735 HOH HOH . K 6 HOH A 90 736 736 HOH HOH . K 6 HOH A 91 737 737 HOH HOH . K 6 HOH A 92 738 738 HOH HOH . K 6 HOH A 93 739 739 HOH HOH . K 6 HOH A 94 740 740 HOH HOH . K 6 HOH A 95 741 741 HOH HOH . K 6 HOH A 96 742 742 HOH HOH . K 6 HOH A 97 743 743 HOH HOH . K 6 HOH A 98 744 744 HOH HOH . K 6 HOH A 99 745 745 HOH HOH . K 6 HOH A 100 746 746 HOH HOH . K 6 HOH A 101 747 747 HOH HOH . K 6 HOH A 102 748 748 HOH HOH . K 6 HOH A 103 749 749 HOH HOH . K 6 HOH A 104 750 750 HOH HOH . K 6 HOH A 105 751 751 HOH HOH . K 6 HOH A 106 752 752 HOH HOH . K 6 HOH A 107 753 753 HOH HOH . K 6 HOH A 108 754 754 HOH HOH . K 6 HOH A 109 755 755 HOH HOH . K 6 HOH A 110 756 756 HOH HOH . K 6 HOH A 111 757 757 HOH HOH . K 6 HOH A 112 758 758 HOH HOH . K 6 HOH A 113 759 759 HOH HOH . K 6 HOH A 114 760 760 HOH HOH . K 6 HOH A 115 761 761 HOH HOH . K 6 HOH A 116 762 762 HOH HOH . K 6 HOH A 117 763 763 HOH HOH . K 6 HOH A 118 764 764 HOH HOH . K 6 HOH A 119 765 765 HOH HOH . K 6 HOH A 120 766 766 HOH HOH . K 6 HOH A 121 767 767 HOH HOH . K 6 HOH A 122 768 768 HOH HOH . K 6 HOH A 123 769 769 HOH HOH . K 6 HOH A 124 770 770 HOH HOH . K 6 HOH A 125 771 771 HOH HOH . K 6 HOH A 126 772 772 HOH HOH . K 6 HOH A 127 773 773 HOH HOH . K 6 HOH A 128 774 774 HOH HOH . K 6 HOH A 129 775 775 HOH HOH . K 6 HOH A 130 776 776 HOH HOH . K 6 HOH A 131 777 777 HOH HOH . K 6 HOH A 132 778 778 HOH HOH . K 6 HOH A 133 779 728 HOH HOH . L 6 HOH B 1 644 644 HOH HOH . L 6 HOH B 2 645 645 HOH HOH . L 6 HOH B 3 646 646 HOH HOH . L 6 HOH B 4 647 647 HOH HOH . L 6 HOH B 5 648 648 HOH HOH . L 6 HOH B 6 649 649 HOH HOH . L 6 HOH B 7 650 650 HOH HOH . L 6 HOH B 8 651 651 HOH HOH . L 6 HOH B 9 652 652 HOH HOH . L 6 HOH B 10 653 653 HOH HOH . L 6 HOH B 11 654 654 HOH HOH . L 6 HOH B 12 655 655 HOH HOH . L 6 HOH B 13 656 656 HOH HOH . L 6 HOH B 14 657 657 HOH HOH . L 6 HOH B 15 658 658 HOH HOH . L 6 HOH B 16 659 659 HOH HOH . L 6 HOH B 17 660 660 HOH HOH . L 6 HOH B 18 661 661 HOH HOH . L 6 HOH B 19 662 662 HOH HOH . L 6 HOH B 20 663 663 HOH HOH . L 6 HOH B 21 664 664 HOH HOH . L 6 HOH B 22 665 665 HOH HOH . L 6 HOH B 23 666 666 HOH HOH . L 6 HOH B 24 667 667 HOH HOH . L 6 HOH B 25 668 668 HOH HOH . L 6 HOH B 26 669 669 HOH HOH . L 6 HOH B 27 670 670 HOH HOH . L 6 HOH B 28 671 671 HOH HOH . L 6 HOH B 29 672 672 HOH HOH . L 6 HOH B 30 673 673 HOH HOH . L 6 HOH B 31 674 674 HOH HOH . L 6 HOH B 32 675 675 HOH HOH . L 6 HOH B 33 676 676 HOH HOH . L 6 HOH B 34 677 677 HOH HOH . L 6 HOH B 35 678 678 HOH HOH . L 6 HOH B 36 679 679 HOH HOH . L 6 HOH B 37 680 680 HOH HOH . L 6 HOH B 38 681 681 HOH HOH . L 6 HOH B 39 682 682 HOH HOH . L 6 HOH B 40 683 683 HOH HOH . L 6 HOH B 41 684 684 HOH HOH . L 6 HOH B 42 685 685 HOH HOH . L 6 HOH B 43 686 686 HOH HOH . L 6 HOH B 44 687 687 HOH HOH . L 6 HOH B 45 688 688 HOH HOH . L 6 HOH B 46 689 689 HOH HOH . L 6 HOH B 47 690 690 HOH HOH . L 6 HOH B 48 691 691 HOH HOH . L 6 HOH B 49 692 692 HOH HOH . L 6 HOH B 50 693 693 HOH HOH . L 6 HOH B 51 694 694 HOH HOH . L 6 HOH B 52 695 695 HOH HOH . L 6 HOH B 53 696 696 HOH HOH . L 6 HOH B 54 697 697 HOH HOH . L 6 HOH B 55 698 698 HOH HOH . L 6 HOH B 56 699 699 HOH HOH . L 6 HOH B 57 703 703 HOH HOH . L 6 HOH B 58 704 704 HOH HOH . L 6 HOH B 59 705 705 HOH HOH . L 6 HOH B 60 706 706 HOH HOH . L 6 HOH B 61 707 707 HOH HOH . L 6 HOH B 62 708 708 HOH HOH . L 6 HOH B 63 709 709 HOH HOH . L 6 HOH B 64 710 710 HOH HOH . L 6 HOH B 65 711 711 HOH HOH . L 6 HOH B 66 712 712 HOH HOH . L 6 HOH B 67 713 713 HOH HOH . L 6 HOH B 68 714 714 HOH HOH . L 6 HOH B 69 715 715 HOH HOH . L 6 HOH B 70 716 716 HOH HOH . L 6 HOH B 71 717 717 HOH HOH . L 6 HOH B 72 718 718 HOH HOH . L 6 HOH B 73 719 719 HOH HOH . L 6 HOH B 74 720 720 HOH HOH . L 6 HOH B 75 721 721 HOH HOH . L 6 HOH B 76 722 722 HOH HOH . L 6 HOH B 77 723 723 HOH HOH . L 6 HOH B 78 724 724 HOH HOH . L 6 HOH B 79 725 725 HOH HOH . L 6 HOH B 80 726 726 HOH HOH . L 6 HOH B 81 727 727 HOH HOH . L 6 HOH B 82 729 729 HOH HOH . L 6 HOH B 83 730 730 HOH HOH . L 6 HOH B 84 731 731 HOH HOH . L 6 HOH B 85 732 732 HOH HOH . L 6 HOH B 86 733 733 HOH HOH . L 6 HOH B 87 734 734 HOH HOH . L 6 HOH B 88 735 735 HOH HOH . L 6 HOH B 89 736 736 HOH HOH . L 6 HOH B 90 737 737 HOH HOH . L 6 HOH B 91 738 738 HOH HOH . L 6 HOH B 92 739 739 HOH HOH . L 6 HOH B 93 740 740 HOH HOH . L 6 HOH B 94 741 741 HOH HOH . L 6 HOH B 95 742 742 HOH HOH . L 6 HOH B 96 743 743 HOH HOH . L 6 HOH B 97 744 744 HOH HOH . L 6 HOH B 98 745 745 HOH HOH . L 6 HOH B 99 746 746 HOH HOH . L 6 HOH B 100 747 747 HOH HOH . L 6 HOH B 101 748 748 HOH HOH . L 6 HOH B 102 749 749 HOH HOH . L 6 HOH B 103 750 750 HOH HOH . L 6 HOH B 104 751 751 HOH HOH . L 6 HOH B 105 752 752 HOH HOH . L 6 HOH B 106 753 753 HOH HOH . L 6 HOH B 107 754 754 HOH HOH . L 6 HOH B 108 755 755 HOH HOH . L 6 HOH B 109 756 756 HOH HOH . L 6 HOH B 110 757 757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 5 63.156 48.086 20.677 1 102.96 ? P PO4 900 B 1 HETATM 2 O O1 PO4 . . . J 5 64.141 48.925 19.889 1 71.48 ? O1 PO4 900 B 1 HETATM 3 O O2 PO4 . . . J 5 61.851 47.913 19.918 1 106.86 ? O2 PO4 900 B 1 HETATM 4 O O3 PO4 . . . J 5 63.781 46.715 20.918 1 103.71 ? O3 PO4 900 B 1 HETATM 5 O O4 PO4 . . . J 5 62.815 48.761 21.997 1 96.58 ? O4 PO4 900 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #