data_3R79
#
_model_server_result.job_id            ZzHFxBjCOjXhXiySZEcecQ 
_model_server_result.datetime_utc      '2025-04-01 10:22:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":243}' 
#
_entry.id    3R79 
#
_exptl.entry_id    3R79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              140.908 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PRASEODYMIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R79 
_cell.length_a            52.687 
_cell.length_b            89.128 
_cell.length_c            109.731 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
B,D,E,F,H 3 1 
A,C,G 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_475 x-1/2,-y+5/2,-z 1 0 0 0 -1 0 0 0 -1 -26.3435 222.82 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 4 A MSE 2 1_555 A N GLU 5 A GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C LEU 164 A LEU 162 1_555 A N MSE 165 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C MSE 165 A MSE 163 1_555 A N CYS 166 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C SER 194 A SER 192 1_555 A N MSE 195 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C MSE 195 A MSE 193 1_555 A N GLY 196 A GLY 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C GLY 196 A GLY 194 1_555 A N MSE 197 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C MSE 197 A MSE 195 1_555 A N SER 198 A SER 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C LEU 164 B LEU 162 1_555 B N MSE 165 B MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 B C MSE 165 B MSE 163 1_555 B N CYS 166 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 B C SER 194 B SER 192 1_555 B N MSE 195 B MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C MSE 195 B MSE 193 1_555 B N GLY 196 B GLY 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C GLY 196 B GLY 194 1_555 B N MSE 197 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale13 B C MSE 197 B MSE 195 1_555 B N SER 198 B SER 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OE2 GLU 7 A GLU 5 1_555 C PR PR . A PR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc2 A OE2 GLU 11 A GLU 9 1_555 C PR PR . A PR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc3 A OE1 GLU 11 A GLU 9 1_555 C PR PR . A PR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc4 C PR PR . A PR 243 1_555 G O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc5 C PR PR . A PR 243 1_555 G O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? 
metalc ? metalc6 C PR PR . A PR 243 1_555 B OE2 GLU 206 B GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc7 C PR PR . A PR 243 1_555 B OE1 GLU 206 B GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc8 C PR PR . A PR 243 1_555 H O HOH . B HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc9 C PR PR . A PR 243 1_555 H O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc10 D PR PR . B PR 243 1_555 E O ACT . B ACT 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? 
metalc ? metalc11 D PR PR . B PR 243 1_555 E OXT ACT . B ACT 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? 
metalc ? metalc12 D PR PR . B PR 243 1_555 F O1P PLP . B PLP 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc13 D PR PR . B PR 243 1_555 H O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc14 D PR PR . B PR 243 1_555 H O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc15 D PR PR . B PR 243 1_555 H O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
#
_chem_comp.formula           'Pr 3' 
_chem_comp.formula_weight    140.908 
_chem_comp.id                PR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PRASEODYMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3R79 
_atom_sites.fract_transf_matrix[1][1]    0.01898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009113 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PR A 1 243 1 PR PR . 
D 2 PR B 1 243 2 PR PR . 
E 3 ACT B 1 244 3 ACT ACT . 
F 4 PLP B 1 258 258 PLP PLP . 
G 5 HOH A 1 244 2 HOH TIP . 
G 5 HOH A 2 245 3 HOH TIP . 
G 5 HOH A 3 246 6 HOH TIP . 
G 5 HOH A 4 247 7 HOH TIP . 
G 5 HOH A 5 248 8 HOH TIP . 
G 5 HOH A 6 249 9 HOH TIP . 
G 5 HOH A 7 250 10 HOH TIP . 
G 5 HOH A 8 251 11 HOH TIP . 
G 5 HOH A 9 252 12 HOH TIP . 
G 5 HOH A 10 253 14 HOH TIP . 
G 5 HOH A 11 254 16 HOH TIP . 
G 5 HOH A 12 255 17 HOH TIP . 
G 5 HOH A 13 256 21 HOH TIP . 
G 5 HOH A 14 257 22 HOH TIP . 
G 5 HOH A 15 258 23 HOH TIP . 
G 5 HOH A 16 259 25 HOH TIP . 
G 5 HOH A 17 260 26 HOH TIP . 
G 5 HOH A 18 261 27 HOH TIP . 
G 5 HOH A 19 262 28 HOH TIP . 
G 5 HOH A 20 263 29 HOH TIP . 
G 5 HOH A 21 264 30 HOH TIP . 
G 5 HOH A 22 265 31 HOH TIP . 
G 5 HOH A 23 266 32 HOH TIP . 
G 5 HOH A 24 267 33 HOH TIP . 
G 5 HOH A 25 268 35 HOH TIP . 
G 5 HOH A 26 269 36 HOH TIP . 
G 5 HOH A 27 270 39 HOH TIP . 
G 5 HOH A 28 271 40 HOH TIP . 
G 5 HOH A 29 272 42 HOH TIP . 
G 5 HOH A 30 273 43 HOH TIP . 
G 5 HOH A 31 274 46 HOH TIP . 
G 5 HOH A 32 275 49 HOH TIP . 
G 5 HOH A 33 276 51 HOH TIP . 
G 5 HOH A 34 277 52 HOH TIP . 
G 5 HOH A 35 278 53 HOH TIP . 
G 5 HOH A 36 279 56 HOH TIP . 
G 5 HOH A 37 280 59 HOH TIP . 
G 5 HOH A 38 281 62 HOH TIP . 
G 5 HOH A 39 282 65 HOH TIP . 
G 5 HOH A 40 283 66 HOH TIP . 
G 5 HOH A 41 284 68 HOH TIP . 
G 5 HOH A 42 285 69 HOH TIP . 
G 5 HOH A 43 286 70 HOH TIP . 
G 5 HOH A 44 287 71 HOH TIP . 
G 5 HOH A 45 288 72 HOH TIP . 
G 5 HOH A 46 289 73 HOH TIP . 
G 5 HOH A 47 290 74 HOH TIP . 
G 5 HOH A 48 291 77 HOH TIP . 
G 5 HOH A 49 292 79 HOH TIP . 
G 5 HOH A 50 293 80 HOH TIP . 
G 5 HOH A 51 294 84 HOH TIP . 
G 5 HOH A 52 295 88 HOH TIP . 
G 5 HOH A 53 296 91 HOH TIP . 
G 5 HOH A 54 297 93 HOH TIP . 
G 5 HOH A 55 298 95 HOH TIP . 
G 5 HOH A 56 299 98 HOH TIP . 
G 5 HOH A 57 300 100 HOH TIP . 
G 5 HOH A 58 301 102 HOH TIP . 
G 5 HOH A 59 302 105 HOH TIP . 
G 5 HOH A 60 303 107 HOH TIP . 
G 5 HOH A 61 304 110 HOH TIP . 
G 5 HOH A 62 305 113 HOH TIP . 
G 5 HOH A 63 306 116 HOH TIP . 
G 5 HOH A 64 307 120 HOH TIP . 
G 5 HOH A 65 308 123 HOH TIP . 
G 5 HOH A 66 309 124 HOH TIP . 
G 5 HOH A 67 310 125 HOH TIP . 
G 5 HOH A 68 311 126 HOH TIP . 
G 5 HOH A 69 312 130 HOH TIP . 
G 5 HOH A 70 313 132 HOH TIP . 
G 5 HOH A 71 314 135 HOH TIP . 
G 5 HOH A 72 315 139 HOH TIP . 
G 5 HOH A 73 316 140 HOH TIP . 
G 5 HOH A 74 317 143 HOH TIP . 
G 5 HOH A 75 318 144 HOH TIP . 
G 5 HOH A 76 320 147 HOH TIP . 
G 5 HOH A 77 321 149 HOH TIP . 
G 5 HOH A 78 322 151 HOH TIP . 
G 5 HOH A 79 323 152 HOH TIP . 
G 5 HOH A 80 324 157 HOH TIP . 
G 5 HOH A 81 325 159 HOH TIP . 
G 5 HOH A 82 326 160 HOH TIP . 
G 5 HOH A 83 327 161 HOH TIP . 
G 5 HOH A 84 328 162 HOH TIP . 
G 5 HOH A 85 329 164 HOH TIP . 
G 5 HOH A 86 330 165 HOH TIP . 
G 5 HOH A 87 331 168 HOH TIP . 
G 5 HOH A 88 332 173 HOH TIP . 
H 5 HOH B 1 245 1 HOH TIP . 
H 5 HOH B 2 246 4 HOH TIP . 
H 5 HOH B 3 247 5 HOH TIP . 
H 5 HOH B 4 248 13 HOH TIP . 
H 5 HOH B 5 249 15 HOH TIP . 
H 5 HOH B 6 250 18 HOH TIP . 
H 5 HOH B 7 251 19 HOH TIP . 
H 5 HOH B 8 252 20 HOH TIP . 
H 5 HOH B 9 253 24 HOH TIP . 
H 5 HOH B 10 254 34 HOH TIP . 
H 5 HOH B 11 255 37 HOH TIP . 
H 5 HOH B 12 256 38 HOH TIP . 
H 5 HOH B 13 257 41 HOH TIP . 
H 5 HOH B 14 259 44 HOH TIP . 
H 5 HOH B 15 260 45 HOH TIP . 
H 5 HOH B 16 261 47 HOH TIP . 
H 5 HOH B 17 262 48 HOH TIP . 
H 5 HOH B 18 263 50 HOH TIP . 
H 5 HOH B 19 264 54 HOH TIP . 
H 5 HOH B 20 265 55 HOH TIP . 
H 5 HOH B 21 266 57 HOH TIP . 
H 5 HOH B 22 267 58 HOH TIP . 
H 5 HOH B 23 268 60 HOH TIP . 
H 5 HOH B 24 269 61 HOH TIP . 
H 5 HOH B 25 270 63 HOH TIP . 
H 5 HOH B 26 271 64 HOH TIP . 
H 5 HOH B 27 272 67 HOH TIP . 
H 5 HOH B 28 273 75 HOH TIP . 
H 5 HOH B 29 274 76 HOH TIP . 
H 5 HOH B 30 275 78 HOH TIP . 
H 5 HOH B 31 276 81 HOH TIP . 
H 5 HOH B 32 277 82 HOH TIP . 
H 5 HOH B 33 278 83 HOH TIP . 
H 5 HOH B 34 279 85 HOH TIP . 
H 5 HOH B 35 280 86 HOH TIP . 
H 5 HOH B 36 281 89 HOH TIP . 
H 5 HOH B 37 282 92 HOH TIP . 
H 5 HOH B 38 283 94 HOH TIP . 
H 5 HOH B 39 284 96 HOH TIP . 
H 5 HOH B 40 285 97 HOH TIP . 
H 5 HOH B 41 286 99 HOH TIP . 
H 5 HOH B 42 287 101 HOH TIP . 
H 5 HOH B 43 288 103 HOH TIP . 
H 5 HOH B 44 289 104 HOH TIP . 
H 5 HOH B 45 290 106 HOH TIP . 
H 5 HOH B 46 291 108 HOH TIP . 
H 5 HOH B 47 292 109 HOH TIP . 
H 5 HOH B 48 293 112 HOH TIP . 
H 5 HOH B 49 294 114 HOH TIP . 
H 5 HOH B 50 295 115 HOH TIP . 
H 5 HOH B 51 296 118 HOH TIP . 
H 5 HOH B 52 297 119 HOH TIP . 
H 5 HOH B 53 298 129 HOH TIP . 
H 5 HOH B 54 299 131 HOH TIP . 
H 5 HOH B 55 300 134 HOH TIP . 
H 5 HOH B 56 301 136 HOH TIP . 
H 5 HOH B 57 302 137 HOH TIP . 
H 5 HOH B 58 303 138 HOH TIP . 
H 5 HOH B 59 304 141 HOH TIP . 
H 5 HOH B 60 305 142 HOH TIP . 
H 5 HOH B 61 306 148 HOH TIP . 
H 5 HOH B 62 307 150 HOH TIP . 
H 5 HOH B 63 308 153 HOH TIP . 
H 5 HOH B 64 309 154 HOH TIP . 
H 5 HOH B 65 310 155 HOH TIP . 
H 5 HOH B 66 311 156 HOH TIP . 
H 5 HOH B 67 312 158 HOH TIP . 
H 5 HOH B 68 313 163 HOH TIP . 
H 5 HOH B 69 314 166 HOH TIP . 
H 5 HOH B 70 315 167 HOH TIP . 
H 5 HOH B 71 316 169 HOH TIP . 
H 5 HOH B 72 317 170 HOH TIP . 
H 5 HOH B 73 318 171 HOH TIP . 
H 5 HOH B 74 319 145 HOH TIP . 
H 5 HOH B 75 320 174 HOH TIP . 
H 5 HOH B 76 321 172 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PR 
_atom_site.label_atom_id         PR 
_atom_site.label_comp_id         PR 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               31.776 
_atom_site.Cartn_y               131.601 
_atom_site.Cartn_z               -0.51 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PR 
_atom_site.auth_comp_id          PR 
_atom_site.auth_seq_id           243 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#