data_3R7E # _model_server_result.job_id 0F3IZU1393RkfDvXmugnCQ _model_server_result.datetime_utc '2025-02-05 08:54:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":919}' # _entry.id 3R7E # _exptl.entry_id 3R7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-nitro-2-[(pyrazin-2-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R7E _cell.length_a 53.68 _cell.length_b 71.69 _cell.length_c 72.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 N5 O3' _chem_comp.formula_weight 273.247 _chem_comp.id X88 _chem_comp.mon_nstd_flag . _chem_comp.name 5-nitro-2-[(pyrazin-2-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 X88 doub 385 n y C1 C6 X88 sing 386 n y C1 H1 X88 sing 387 n n C2 C3 X88 sing 388 n y C2 H2 X88 sing 389 n n C3 C4 X88 doub 390 n y C3 N11 X88 sing 391 n n C4 C5 X88 sing 392 n y C4 H4 X88 sing 393 n n C5 C6 X88 doub 394 n y C5 C8 X88 sing 395 n n C6 N7 X88 sing 396 n n N7 C14 X88 sing 397 n n N7 HN7 X88 sing 398 n n C8 N9 X88 sing 399 n n C8 O10 X88 doub 400 n n N9 HN9 X88 sing 401 n n N9 HN9A X88 sing 402 n n N11 O12 X88 sing 403 n n N11 O13 X88 doub 404 n n C14 C18 X88 sing 405 n n C14 H14 X88 sing 406 n n C14 H14A X88 sing 407 n n C15 N16 X88 doub 408 n y C15 C20 X88 sing 409 n y C15 H15 X88 sing 410 n n N16 C17 X88 sing 411 n y C17 C18 X88 doub 412 n y C17 H17 X88 sing 413 n n C18 N19 X88 sing 414 n y N19 C20 X88 doub 415 n y C20 H20 X88 sing 416 n n # _atom_sites.entry_id 3R7E _atom_sites.fract_transf_matrix[1][1] 0.018629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 918 1 EDO EDO . C 3 X88 A 1 919 1 X88 X88 . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 315 17 HOH HOH . D 4 HOH A 17 316 18 HOH HOH . D 4 HOH A 18 317 19 HOH HOH . D 4 HOH A 19 318 20 HOH HOH . D 4 HOH A 20 320 22 HOH HOH . D 4 HOH A 21 322 24 HOH HOH . D 4 HOH A 22 326 28 HOH HOH . D 4 HOH A 23 328 30 HOH HOH . D 4 HOH A 24 329 31 HOH HOH . D 4 HOH A 25 330 32 HOH HOH . D 4 HOH A 26 331 33 HOH HOH . D 4 HOH A 27 332 34 HOH HOH . D 4 HOH A 28 333 35 HOH HOH . D 4 HOH A 29 334 36 HOH HOH . D 4 HOH A 30 337 39 HOH HOH . D 4 HOH A 31 340 42 HOH HOH . D 4 HOH A 32 341 43 HOH HOH . D 4 HOH A 33 342 44 HOH HOH . D 4 HOH A 34 345 47 HOH HOH . D 4 HOH A 35 347 49 HOH HOH . D 4 HOH A 36 348 50 HOH HOH . D 4 HOH A 37 349 51 HOH HOH . D 4 HOH A 38 351 53 HOH HOH . D 4 HOH A 39 352 54 HOH HOH . D 4 HOH A 40 353 55 HOH HOH . D 4 HOH A 41 354 56 HOH HOH . D 4 HOH A 42 355 57 HOH HOH . D 4 HOH A 43 360 62 HOH HOH . D 4 HOH A 44 361 63 HOH HOH . D 4 HOH A 45 362 64 HOH HOH . D 4 HOH A 46 364 66 HOH HOH . D 4 HOH A 47 365 67 HOH HOH . D 4 HOH A 48 366 68 HOH HOH . D 4 HOH A 49 373 75 HOH HOH . D 4 HOH A 50 374 76 HOH HOH . D 4 HOH A 51 376 78 HOH HOH . D 4 HOH A 52 377 79 HOH HOH . D 4 HOH A 53 378 80 HOH HOH . D 4 HOH A 54 381 83 HOH HOH . D 4 HOH A 55 382 84 HOH HOH . D 4 HOH A 56 384 86 HOH HOH . D 4 HOH A 57 387 89 HOH HOH . D 4 HOH A 58 389 91 HOH HOH . D 4 HOH A 59 390 92 HOH HOH . D 4 HOH A 60 391 93 HOH HOH . D 4 HOH A 61 393 95 HOH HOH . D 4 HOH A 62 398 100 HOH HOH . D 4 HOH A 63 400 102 HOH HOH . D 4 HOH A 64 401 103 HOH HOH . D 4 HOH A 65 404 106 HOH HOH . D 4 HOH A 66 407 109 HOH HOH . D 4 HOH A 67 409 111 HOH HOH . D 4 HOH A 68 410 112 HOH HOH . D 4 HOH A 69 412 114 HOH HOH . D 4 HOH A 70 415 117 HOH HOH . D 4 HOH A 71 416 118 HOH HOH . D 4 HOH A 72 418 120 HOH HOH . D 4 HOH A 73 419 121 HOH HOH . D 4 HOH A 74 421 123 HOH HOH . D 4 HOH A 75 427 129 HOH HOH . D 4 HOH A 76 429 131 HOH HOH . D 4 HOH A 77 431 133 HOH HOH . D 4 HOH A 78 432 134 HOH HOH . D 4 HOH A 79 434 136 HOH HOH . D 4 HOH A 80 435 137 HOH HOH . D 4 HOH A 81 442 144 HOH HOH . D 4 HOH A 82 443 145 HOH HOH . D 4 HOH A 83 444 146 HOH HOH . D 4 HOH A 84 447 149 HOH HOH . D 4 HOH A 85 450 152 HOH HOH . D 4 HOH A 86 462 164 HOH HOH . D 4 HOH A 87 472 174 HOH HOH . D 4 HOH A 88 478 180 HOH HOH . D 4 HOH A 89 479 181 HOH HOH . D 4 HOH A 90 481 183 HOH HOH . D 4 HOH A 91 483 185 HOH HOH . D 4 HOH A 92 484 186 HOH HOH . D 4 HOH A 93 486 188 HOH HOH . D 4 HOH A 94 487 189 HOH HOH . D 4 HOH A 95 489 191 HOH HOH . D 4 HOH A 96 491 193 HOH HOH . D 4 HOH A 97 492 194 HOH HOH . D 4 HOH A 98 493 195 HOH HOH . D 4 HOH A 99 494 196 HOH HOH . D 4 HOH A 100 499 201 HOH HOH . D 4 HOH A 101 505 207 HOH HOH . D 4 HOH A 102 508 210 HOH HOH . D 4 HOH A 103 509 211 HOH HOH . D 4 HOH A 104 514 216 HOH HOH . D 4 HOH A 105 516 218 HOH HOH . D 4 HOH A 106 517 219 HOH HOH . D 4 HOH A 107 537 239 HOH HOH . D 4 HOH A 108 538 240 HOH HOH . D 4 HOH A 109 539 241 HOH HOH . D 4 HOH A 110 542 244 HOH HOH . D 4 HOH A 111 548 250 HOH HOH . D 4 HOH A 112 553 255 HOH HOH . D 4 HOH A 113 554 256 HOH HOH . D 4 HOH A 114 557 259 HOH HOH . D 4 HOH A 115 564 266 HOH HOH . D 4 HOH A 116 565 267 HOH HOH . D 4 HOH A 117 566 268 HOH HOH . D 4 HOH A 118 572 274 HOH HOH . D 4 HOH A 119 578 280 HOH HOH . D 4 HOH A 120 579 281 HOH HOH . D 4 HOH A 121 582 284 HOH HOH . D 4 HOH A 122 584 286 HOH HOH . D 4 HOH A 123 585 287 HOH HOH . D 4 HOH A 124 587 289 HOH HOH . D 4 HOH A 125 613 315 HOH HOH . D 4 HOH A 126 627 329 HOH HOH . D 4 HOH A 127 629 331 HOH HOH . D 4 HOH A 128 630 332 HOH HOH . D 4 HOH A 129 644 346 HOH HOH . D 4 HOH A 130 646 348 HOH HOH . D 4 HOH A 131 653 355 HOH HOH . D 4 HOH A 132 655 357 HOH HOH . D 4 HOH A 133 662 364 HOH HOH . D 4 HOH A 134 664 366 HOH HOH . D 4 HOH A 135 666 368 HOH HOH . D 4 HOH A 136 667 369 HOH HOH . D 4 HOH A 137 669 371 HOH HOH . D 4 HOH A 138 670 372 HOH HOH . D 4 HOH A 139 677 379 HOH HOH . D 4 HOH A 140 687 389 HOH HOH . D 4 HOH A 141 696 398 HOH HOH . D 4 HOH A 142 700 402 HOH HOH . D 4 HOH A 143 701 403 HOH HOH . D 4 HOH A 144 703 405 HOH HOH . D 4 HOH A 145 704 406 HOH HOH . D 4 HOH A 146 715 417 HOH HOH . D 4 HOH A 147 718 420 HOH HOH . D 4 HOH A 148 742 444 HOH HOH . D 4 HOH A 149 743 445 HOH HOH . D 4 HOH A 150 750 452 HOH HOH . D 4 HOH A 151 764 466 HOH HOH . D 4 HOH A 152 770 472 HOH HOH . D 4 HOH A 153 778 480 HOH HOH . D 4 HOH A 154 808 510 HOH HOH . D 4 HOH A 155 809 511 HOH HOH . D 4 HOH A 156 828 530 HOH HOH . D 4 HOH A 157 834 536 HOH HOH . D 4 HOH A 158 838 540 HOH HOH . D 4 HOH A 159 840 542 HOH HOH . D 4 HOH A 160 842 544 HOH HOH . D 4 HOH A 161 852 554 HOH HOH . D 4 HOH A 162 859 561 HOH HOH . D 4 HOH A 163 875 577 HOH HOH . D 4 HOH A 164 878 580 HOH HOH . D 4 HOH A 165 888 590 HOH HOH . D 4 HOH A 166 889 591 HOH HOH . D 4 HOH A 167 890 592 HOH HOH . D 4 HOH A 168 894 596 HOH HOH . D 4 HOH A 169 897 599 HOH HOH . D 4 HOH A 170 898 600 HOH HOH . D 4 HOH A 171 899 601 HOH HOH . D 4 HOH A 172 900 602 HOH HOH . D 4 HOH A 173 901 603 HOH HOH . D 4 HOH A 174 902 604 HOH HOH . D 4 HOH A 175 903 605 HOH HOH . D 4 HOH A 176 906 608 HOH HOH . D 4 HOH A 177 908 610 HOH HOH . D 4 HOH A 178 909 611 HOH HOH . D 4 HOH A 179 910 612 HOH HOH . D 4 HOH A 180 911 613 HOH HOH . D 4 HOH A 181 912 614 HOH HOH . D 4 HOH A 182 913 615 HOH HOH . D 4 HOH A 183 914 616 HOH HOH . D 4 HOH A 184 916 618 HOH HOH . D 4 HOH A 185 917 619 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 X88 . . . C 3 65.423 45.17 -46.367 1 32.96 ? C1 X88 919 A 1 HETATM 2 C C2 X88 . . . C 3 66.709 44.735 -45.959 1 34.97 ? C2 X88 919 A 1 HETATM 3 C C3 X88 . . . C 3 67.845 44.832 -46.828 1 36.43 ? C3 X88 919 A 1 HETATM 4 C C4 X88 . . . C 3 67.631 45.397 -48.141 1 33.96 ? C4 X88 919 A 1 HETATM 5 C C5 X88 . . . C 3 66.332 45.859 -48.608 1 30.68 ? C5 X88 919 A 1 HETATM 6 C C6 X88 . . . C 3 65.176 45.739 -47.688 1 31.66 ? C6 X88 919 A 1 HETATM 7 N N7 X88 . . . C 3 63.953 46.13 -48.073 1 29.69 ? N7 X88 919 A 1 HETATM 8 C C8 X88 . . . C 3 66.231 46.357 -49.915 1 28.62 ? C8 X88 919 A 1 HETATM 9 N N9 X88 . . . C 3 67.076 45.977 -50.924 1 25.57 ? N9 X88 919 A 1 HETATM 10 O O10 X88 . . . C 3 65.263 47.234 -50.242 1 25.55 ? O10 X88 919 A 1 HETATM 11 N N11 X88 . . . C 3 69.072 44.409 -46.437 1 38.63 ? N11 X88 919 A 1 HETATM 12 O O12 X88 . . . C 3 70.145 44.493 -47.25 1 39.67 ? O12 X88 919 A 1 HETATM 13 O O13 X88 . . . C 3 69.26 43.932 -45.331 1 40.92 ? O13 X88 919 A 1 HETATM 14 C C14 X88 . . . C 3 62.699 46.064 -47.288 1 30.87 ? C14 X88 919 A 1 HETATM 15 C C15 X88 . . . C 3 61.982 49.453 -44.671 1 31.95 ? C15 X88 919 A 1 HETATM 16 N N16 X88 . . . C 3 62.868 49.562 -45.724 1 31.17 ? N16 X88 919 A 1 HETATM 17 C C17 X88 . . . C 3 63.133 48.519 -46.587 1 30.93 ? C17 X88 919 A 1 HETATM 18 C C18 X88 . . . C 3 62.468 47.273 -46.386 1 31.73 ? C18 X88 919 A 1 HETATM 19 N N19 X88 . . . C 3 61.576 47.174 -45.321 1 32.51 ? N19 X88 919 A 1 HETATM 20 C C20 X88 . . . C 3 61.317 48.226 -44.462 1 32.63 ? C20 X88 919 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #