data_3R7K # _model_server_result.job_id skN2yo9FAqRLv-B4ZllcGw _model_server_result.datetime_utc '2025-03-13 21:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":420}' # _entry.id 3R7K # _exptl.entry_id 3R7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R7K _cell.length_a 85.25 _cell.length_b 121.12 _cell.length_c 172.09 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 97 A THR 93 1_555 F K K . A K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 A OH TYR 377 A TYR 373 1_555 G K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 G K K . A K 401 1_555 O O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 G K K . A K 401 1_555 B OH TYR 377 B TYR 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc5 G K K . A K 401 1_555 P O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc6 B OG1 THR 97 B THR 93 1_555 I K K . B K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc7 C OG1 THR 97 C THR 93 1_555 K K K . C K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 C OH TYR 377 C TYR 373 1_555 L K K . C K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc9 L K K . C K 401 1_555 Q O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc10 L K K . C K 401 1_555 Q O HOH . C HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 L K K . C K 401 1_555 Q O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc12 L K K . C K 401 1_555 D OH TYR 377 D TYR 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc13 L K K . C K 401 1_555 R O HOH . D HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc14 D OG1 THR 97 D THR 93 1_555 N K K . D K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FDA doub 83 n n PA O2A FDA sing 84 n n PA O5B FDA sing 85 n n PA O3P FDA sing 86 n n O2A HOA2 FDA sing 87 n n O5B C5B FDA sing 88 n n C5B C4B FDA sing 89 n n C5B H51A FDA sing 90 n n C5B H52A FDA sing 91 n n C4B O4B FDA sing 92 n n C4B C3B FDA sing 93 n n C4B H4B FDA sing 94 n n O4B C1B FDA sing 95 n n C3B O3B FDA sing 96 n n C3B C2B FDA sing 97 n n C3B H3B FDA sing 98 n n O3B HO3A FDA sing 99 n n C2B O2B FDA sing 100 n n C2B C1B FDA sing 101 n n C2B H2B FDA sing 102 n n O2B HO2A FDA sing 103 n n C1B N9A FDA sing 104 n n C1B H1B FDA sing 105 n n N9A C8A FDA sing 106 n y N9A C4A FDA sing 107 n y C8A N7A FDA doub 108 n y C8A H8A FDA sing 109 n n N7A C5A FDA sing 110 n y C5A C6A FDA sing 111 n y C5A C4A FDA doub 112 n y C6A N6A FDA sing 113 n n C6A N1A FDA doub 114 n y N6A H61A FDA sing 115 n n N6A H62A FDA sing 116 n n N1A C2A FDA sing 117 n y C2A N3A FDA doub 118 n y C2A H2A FDA sing 119 n n N3A C4A FDA sing 120 n y N1 C2 FDA sing 121 n n N1 C10 FDA sing 122 n n N1 HN1 FDA sing 123 n n C2 O2 FDA doub 124 n n C2 N3 FDA sing 125 n n N3 C4 FDA sing 126 n n N3 HN3 FDA sing 127 n n C4 O4 FDA doub 128 n n C4 C4X FDA sing 129 n n C4X N5 FDA sing 130 n n C4X C10 FDA doub 131 n n N5 C5X FDA sing 132 n n N5 HN5 FDA sing 133 n n C5X C6 FDA doub 134 n y C5X C9A FDA sing 135 n y C6 C7 FDA sing 136 n y C6 H6 FDA sing 137 n n C7 C7M FDA sing 138 n n C7 C8 FDA doub 139 n y C7M HM71 FDA sing 140 n n C7M HM72 FDA sing 141 n n C7M HM73 FDA sing 142 n n C8 C8M FDA sing 143 n n C8 C9 FDA sing 144 n y C8M HM81 FDA sing 145 n n C8M HM82 FDA sing 146 n n C8M HM83 FDA sing 147 n n C9 C9A FDA doub 148 n y C9 H9 FDA sing 149 n n C9A N10 FDA sing 150 n n N10 C10 FDA sing 151 n n N10 C1' FDA sing 152 n n C1' C2' FDA sing 153 n n C1' "H1'1" FDA sing 154 n n C1' "H1'2" FDA sing 155 n n C2' O2' FDA sing 156 n n C2' C3' FDA sing 157 n n C2' H2' FDA sing 158 n n O2' HO2' FDA sing 159 n n C3' O3' FDA sing 160 n n C3' C4' FDA sing 161 n n C3' H3' FDA sing 162 n n O3' HO3' FDA sing 163 n n C4' O4' FDA sing 164 n n C4' C5' FDA sing 165 n n C4' H4' FDA sing 166 n n O4' HO4' FDA sing 167 n n C5' O5' FDA sing 168 n n C5' "H5'1" FDA sing 169 n n C5' "H5'2" FDA sing 170 n n O5' P FDA sing 171 n n P O1P FDA doub 172 n n P O2P FDA sing 173 n n P O3P FDA sing 174 n n O2P HOP2 FDA sing 175 n n # _atom_sites.entry_id 3R7K _atom_sites.fract_transf_matrix[1][1] 0.01173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FDA A 1 420 420 FDA FDA . F 3 K A 1 400 400 K K . G 3 K A 1 401 401 K K . H 2 FDA B 1 420 420 FDA FDA . I 3 K B 1 400 400 K K . J 2 FDA C 1 420 420 FDA FDA . K 3 K C 1 400 400 K K . L 3 K C 1 401 401 K K . M 2 FDA D 1 420 420 FDA FDA . N 3 K D 1 400 400 K K . O 4 HOH A 1 402 402 HOH HOH . O 4 HOH A 2 403 403 HOH HOH . O 4 HOH A 3 404 404 HOH HOH . O 4 HOH A 4 405 405 HOH HOH . O 4 HOH A 5 406 406 HOH HOH . O 4 HOH A 6 407 407 HOH HOH . O 4 HOH A 7 408 408 HOH HOH . O 4 HOH A 8 409 409 HOH HOH . O 4 HOH A 9 410 410 HOH HOH . O 4 HOH A 10 411 411 HOH HOH . O 4 HOH A 11 412 412 HOH HOH . O 4 HOH A 12 413 413 HOH HOH . O 4 HOH A 13 414 414 HOH HOH . O 4 HOH A 14 415 415 HOH HOH . O 4 HOH A 15 416 416 HOH HOH . O 4 HOH A 16 417 417 HOH HOH . P 4 HOH B 1 401 401 HOH HOH . P 4 HOH B 2 402 402 HOH HOH . P 4 HOH B 3 403 403 HOH HOH . P 4 HOH B 4 404 404 HOH HOH . P 4 HOH B 5 405 405 HOH HOH . P 4 HOH B 6 406 406 HOH HOH . P 4 HOH B 7 407 407 HOH HOH . P 4 HOH B 8 408 408 HOH HOH . P 4 HOH B 9 409 409 HOH HOH . P 4 HOH B 10 410 410 HOH HOH . P 4 HOH B 11 411 411 HOH HOH . Q 4 HOH C 1 402 402 HOH HOH . Q 4 HOH C 2 403 403 HOH HOH . Q 4 HOH C 3 404 404 HOH HOH . Q 4 HOH C 4 405 405 HOH HOH . Q 4 HOH C 5 406 406 HOH HOH . Q 4 HOH C 6 407 407 HOH HOH . Q 4 HOH C 7 408 408 HOH HOH . Q 4 HOH C 8 409 409 HOH HOH . Q 4 HOH C 9 410 410 HOH HOH . Q 4 HOH C 10 411 411 HOH HOH . Q 4 HOH C 11 412 412 HOH HOH . Q 4 HOH C 12 413 413 HOH HOH . Q 4 HOH C 13 414 414 HOH HOH . R 4 HOH D 1 401 401 HOH HOH . R 4 HOH D 2 402 402 HOH HOH . R 4 HOH D 3 403 403 HOH HOH . R 4 HOH D 4 404 404 HOH HOH . R 4 HOH D 5 405 405 HOH HOH . R 4 HOH D 6 406 406 HOH HOH . R 4 HOH D 7 407 407 HOH HOH . R 4 HOH D 8 408 408 HOH HOH . R 4 HOH D 9 409 409 HOH HOH . R 4 HOH D 10 410 410 HOH HOH . R 4 HOH D 11 411 411 HOH HOH . R 4 HOH D 12 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . H 2 37.77 27.909 -24.658 1 69.9 ? PA FDA 420 B 1 HETATM 2 O O1A FDA . . . H 2 38.758 28.999 -25.03 1 70.75 ? O1A FDA 420 B 1 HETATM 3 O O2A FDA . . . H 2 36.362 28.223 -24.198 1 67.99 ? O2A FDA 420 B 1 HETATM 4 O O5B FDA . . . H 2 37.737 26.74 -25.781 1 71.31 ? O5B FDA 420 B 1 HETATM 5 C C5B FDA . . . H 2 36.528 26.071 -26.231 1 72.33 ? C5B FDA 420 B 1 HETATM 6 C C4B FDA . . . H 2 36.804 25.182 -27.472 1 74.14 ? C4B FDA 420 B 1 HETATM 7 O O4B FDA . . . H 2 36.586 25.889 -28.722 1 73.17 ? O4B FDA 420 B 1 HETATM 8 C C3B FDA . . . H 2 38.254 24.662 -27.502 1 74.36 ? C3B FDA 420 B 1 HETATM 9 O O3B FDA . . . H 2 38.327 23.262 -27.793 1 75.76 ? O3B FDA 420 B 1 HETATM 10 C C2B FDA . . . H 2 38.945 25.497 -28.568 1 73.51 ? C2B FDA 420 B 1 HETATM 11 O O2B FDA . . . H 2 39.96 24.784 -29.265 1 71.95 ? O2B FDA 420 B 1 HETATM 12 C C1B FDA . . . H 2 37.811 25.966 -29.466 1 73.99 ? C1B FDA 420 B 1 HETATM 13 N N9A FDA . . . H 2 38.107 27.345 -29.922 1 77.61 ? N9A FDA 420 B 1 HETATM 14 C C8A FDA . . . H 2 38.142 28.433 -29.147 1 78.74 ? C8A FDA 420 B 1 HETATM 15 N N7A FDA . . . H 2 38.461 29.496 -29.917 1 80.29 ? N7A FDA 420 B 1 HETATM 16 C C5A FDA . . . H 2 38.635 29.087 -31.189 1 80.74 ? C5A FDA 420 B 1 HETATM 17 C C6A FDA . . . H 2 38.967 29.742 -32.385 1 80.89 ? C6A FDA 420 B 1 HETATM 18 N N6A FDA . . . H 2 39.192 31.075 -32.429 1 80.65 ? N6A FDA 420 B 1 HETATM 19 N N1A FDA . . . H 2 39.07 29.011 -33.516 1 81.04 ? N1A FDA 420 B 1 HETATM 20 C C2A FDA . . . H 2 38.856 27.674 -33.496 1 81.13 ? C2A FDA 420 B 1 HETATM 21 N N3A FDA . . . H 2 38.526 27.016 -32.365 1 79.71 ? N3A FDA 420 B 1 HETATM 22 C C4A FDA . . . H 2 38.413 27.709 -31.187 1 80.38 ? C4A FDA 420 B 1 HETATM 23 N N1 FDA . . . H 2 44.94 27.919 -16.571 1 67.1 ? N1 FDA 420 B 1 HETATM 24 C C2 FDA . . . H 2 45.717 28.726 -15.813 1 66.96 ? C2 FDA 420 B 1 HETATM 25 O O2 FDA . . . H 2 45.709 29.966 -16.033 1 60.78 ? O2 FDA 420 B 1 HETATM 26 N N3 FDA . . . H 2 46.482 28.152 -14.827 1 69.74 ? N3 FDA 420 B 1 HETATM 27 C C4 FDA . . . H 2 46.483 26.797 -14.614 1 68.36 ? C4 FDA 420 B 1 HETATM 28 O O4 FDA . . . H 2 47.196 26.331 -13.696 1 67.01 ? O4 FDA 420 B 1 HETATM 29 C C4X FDA . . . H 2 45.69 25.958 -15.435 1 68.26 ? C4X FDA 420 B 1 HETATM 30 N N5 FDA . . . H 2 45.693 24.598 -15.357 1 66.5 ? N5 FDA 420 B 1 HETATM 31 C C5X FDA . . . H 2 44.595 23.918 -15.742 1 66.4 ? C5X FDA 420 B 1 HETATM 32 C C6 FDA . . . H 2 44.21 22.741 -15.098 1 65.59 ? C6 FDA 420 B 1 HETATM 33 C C7 FDA . . . H 2 42.985 22.133 -15.394 1 63.62 ? C7 FDA 420 B 1 HETATM 34 C C7M FDA . . . H 2 42.59 20.873 -14.704 1 67.55 ? C7M FDA 420 B 1 HETATM 35 C C8 FDA . . . H 2 42.121 22.675 -16.307 1 63.36 ? C8 FDA 420 B 1 HETATM 36 C C8M FDA . . . H 2 40.801 22.021 -16.618 1 63.04 ? C8M FDA 420 B 1 HETATM 37 C C9 FDA . . . H 2 42.49 23.832 -16.968 1 64.91 ? C9 FDA 420 B 1 HETATM 38 C C9A FDA . . . H 2 43.716 24.466 -16.694 1 66.57 ? C9A FDA 420 B 1 HETATM 39 N N10 FDA . . . H 2 43.885 25.821 -17.046 1 66.44 ? N10 FDA 420 B 1 HETATM 40 C C10 FDA . . . H 2 44.909 26.57 -16.418 1 66.78 ? C10 FDA 420 B 1 HETATM 41 C C1' FDA . . . H 2 43.133 26.395 -18.172 1 66.44 ? C1' FDA 420 B 1 HETATM 42 C C2' FDA . . . H 2 43.439 25.764 -19.542 1 65.53 ? C2' FDA 420 B 1 HETATM 43 O O2' FDA . . . H 2 44.724 26.222 -20 1 65.39 ? O2' FDA 420 B 1 HETATM 44 C C3' FDA . . . H 2 42.315 26.222 -20.487 1 64.48 ? C3' FDA 420 B 1 HETATM 45 O O3' FDA . . . H 2 41.11 25.567 -20.067 1 61.16 ? O3' FDA 420 B 1 HETATM 46 C C4' FDA . . . H 2 42.529 25.978 -21.998 1 63.24 ? C4' FDA 420 B 1 HETATM 47 O O4' FDA . . . H 2 43.557 26.778 -22.578 1 60.28 ? O4' FDA 420 B 1 HETATM 48 C C5' FDA . . . H 2 41.273 26.226 -22.816 1 63.14 ? C5' FDA 420 B 1 HETATM 49 O O5' FDA . . . H 2 40.592 27.388 -22.39 1 65.05 ? O5' FDA 420 B 1 HETATM 50 P P FDA . . . H 2 39.01 27.272 -22.108 1 68.37 ? P FDA 420 B 1 HETATM 51 O O1P FDA . . . H 2 38.711 26.08 -21.247 1 68.55 ? O1P FDA 420 B 1 HETATM 52 O O2P FDA . . . H 2 38.462 28.624 -21.725 1 70.72 ? O2P FDA 420 B 1 HETATM 53 O O3P FDA . . . H 2 38.469 26.92 -23.587 1 72.15 ? O3P FDA 420 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #