data_3R7K # _model_server_result.job_id RXq3LPgZfnmNdd3sbiwi3A _model_server_result.datetime_utc '2025-03-13 21:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":420}' # _entry.id 3R7K # _exptl.entry_id 3R7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R7K _cell.length_a 85.25 _cell.length_b 121.12 _cell.length_c 172.09 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 97 A THR 93 1_555 F K K . A K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 A OH TYR 377 A TYR 373 1_555 G K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 G K K . A K 401 1_555 O O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 G K K . A K 401 1_555 B OH TYR 377 B TYR 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc5 G K K . A K 401 1_555 P O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc6 B OG1 THR 97 B THR 93 1_555 I K K . B K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc7 C OG1 THR 97 C THR 93 1_555 K K K . C K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 C OH TYR 377 C TYR 373 1_555 L K K . C K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc9 L K K . C K 401 1_555 Q O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc10 L K K . C K 401 1_555 Q O HOH . C HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 L K K . C K 401 1_555 Q O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc12 L K K . C K 401 1_555 D OH TYR 377 D TYR 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc13 L K K . C K 401 1_555 R O HOH . D HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc14 D OG1 THR 97 D THR 93 1_555 N K K . D K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FDA doub 83 n n PA O2A FDA sing 84 n n PA O5B FDA sing 85 n n PA O3P FDA sing 86 n n O2A HOA2 FDA sing 87 n n O5B C5B FDA sing 88 n n C5B C4B FDA sing 89 n n C5B H51A FDA sing 90 n n C5B H52A FDA sing 91 n n C4B O4B FDA sing 92 n n C4B C3B FDA sing 93 n n C4B H4B FDA sing 94 n n O4B C1B FDA sing 95 n n C3B O3B FDA sing 96 n n C3B C2B FDA sing 97 n n C3B H3B FDA sing 98 n n O3B HO3A FDA sing 99 n n C2B O2B FDA sing 100 n n C2B C1B FDA sing 101 n n C2B H2B FDA sing 102 n n O2B HO2A FDA sing 103 n n C1B N9A FDA sing 104 n n C1B H1B FDA sing 105 n n N9A C8A FDA sing 106 n y N9A C4A FDA sing 107 n y C8A N7A FDA doub 108 n y C8A H8A FDA sing 109 n n N7A C5A FDA sing 110 n y C5A C6A FDA sing 111 n y C5A C4A FDA doub 112 n y C6A N6A FDA sing 113 n n C6A N1A FDA doub 114 n y N6A H61A FDA sing 115 n n N6A H62A FDA sing 116 n n N1A C2A FDA sing 117 n y C2A N3A FDA doub 118 n y C2A H2A FDA sing 119 n n N3A C4A FDA sing 120 n y N1 C2 FDA sing 121 n n N1 C10 FDA sing 122 n n N1 HN1 FDA sing 123 n n C2 O2 FDA doub 124 n n C2 N3 FDA sing 125 n n N3 C4 FDA sing 126 n n N3 HN3 FDA sing 127 n n C4 O4 FDA doub 128 n n C4 C4X FDA sing 129 n n C4X N5 FDA sing 130 n n C4X C10 FDA doub 131 n n N5 C5X FDA sing 132 n n N5 HN5 FDA sing 133 n n C5X C6 FDA doub 134 n y C5X C9A FDA sing 135 n y C6 C7 FDA sing 136 n y C6 H6 FDA sing 137 n n C7 C7M FDA sing 138 n n C7 C8 FDA doub 139 n y C7M HM71 FDA sing 140 n n C7M HM72 FDA sing 141 n n C7M HM73 FDA sing 142 n n C8 C8M FDA sing 143 n n C8 C9 FDA sing 144 n y C8M HM81 FDA sing 145 n n C8M HM82 FDA sing 146 n n C8M HM83 FDA sing 147 n n C9 C9A FDA doub 148 n y C9 H9 FDA sing 149 n n C9A N10 FDA sing 150 n n N10 C10 FDA sing 151 n n N10 C1' FDA sing 152 n n C1' C2' FDA sing 153 n n C1' "H1'1" FDA sing 154 n n C1' "H1'2" FDA sing 155 n n C2' O2' FDA sing 156 n n C2' C3' FDA sing 157 n n C2' H2' FDA sing 158 n n O2' HO2' FDA sing 159 n n C3' O3' FDA sing 160 n n C3' C4' FDA sing 161 n n C3' H3' FDA sing 162 n n O3' HO3' FDA sing 163 n n C4' O4' FDA sing 164 n n C4' C5' FDA sing 165 n n C4' H4' FDA sing 166 n n O4' HO4' FDA sing 167 n n C5' O5' FDA sing 168 n n C5' "H5'1" FDA sing 169 n n C5' "H5'2" FDA sing 170 n n O5' P FDA sing 171 n n P O1P FDA doub 172 n n P O2P FDA sing 173 n n P O3P FDA sing 174 n n O2P HOP2 FDA sing 175 n n # _atom_sites.entry_id 3R7K _atom_sites.fract_transf_matrix[1][1] 0.01173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FDA A 1 420 420 FDA FDA . F 3 K A 1 400 400 K K . G 3 K A 1 401 401 K K . H 2 FDA B 1 420 420 FDA FDA . I 3 K B 1 400 400 K K . J 2 FDA C 1 420 420 FDA FDA . K 3 K C 1 400 400 K K . L 3 K C 1 401 401 K K . M 2 FDA D 1 420 420 FDA FDA . N 3 K D 1 400 400 K K . O 4 HOH A 1 402 402 HOH HOH . O 4 HOH A 2 403 403 HOH HOH . O 4 HOH A 3 404 404 HOH HOH . O 4 HOH A 4 405 405 HOH HOH . O 4 HOH A 5 406 406 HOH HOH . O 4 HOH A 6 407 407 HOH HOH . O 4 HOH A 7 408 408 HOH HOH . O 4 HOH A 8 409 409 HOH HOH . O 4 HOH A 9 410 410 HOH HOH . O 4 HOH A 10 411 411 HOH HOH . O 4 HOH A 11 412 412 HOH HOH . O 4 HOH A 12 413 413 HOH HOH . O 4 HOH A 13 414 414 HOH HOH . O 4 HOH A 14 415 415 HOH HOH . O 4 HOH A 15 416 416 HOH HOH . O 4 HOH A 16 417 417 HOH HOH . P 4 HOH B 1 401 401 HOH HOH . P 4 HOH B 2 402 402 HOH HOH . P 4 HOH B 3 403 403 HOH HOH . P 4 HOH B 4 404 404 HOH HOH . P 4 HOH B 5 405 405 HOH HOH . P 4 HOH B 6 406 406 HOH HOH . P 4 HOH B 7 407 407 HOH HOH . P 4 HOH B 8 408 408 HOH HOH . P 4 HOH B 9 409 409 HOH HOH . P 4 HOH B 10 410 410 HOH HOH . P 4 HOH B 11 411 411 HOH HOH . Q 4 HOH C 1 402 402 HOH HOH . Q 4 HOH C 2 403 403 HOH HOH . Q 4 HOH C 3 404 404 HOH HOH . Q 4 HOH C 4 405 405 HOH HOH . Q 4 HOH C 5 406 406 HOH HOH . Q 4 HOH C 6 407 407 HOH HOH . Q 4 HOH C 7 408 408 HOH HOH . Q 4 HOH C 8 409 409 HOH HOH . Q 4 HOH C 9 410 410 HOH HOH . Q 4 HOH C 10 411 411 HOH HOH . Q 4 HOH C 11 412 412 HOH HOH . Q 4 HOH C 12 413 413 HOH HOH . Q 4 HOH C 13 414 414 HOH HOH . R 4 HOH D 1 401 401 HOH HOH . R 4 HOH D 2 402 402 HOH HOH . R 4 HOH D 3 403 403 HOH HOH . R 4 HOH D 4 404 404 HOH HOH . R 4 HOH D 5 405 405 HOH HOH . R 4 HOH D 6 406 406 HOH HOH . R 4 HOH D 7 407 407 HOH HOH . R 4 HOH D 8 408 408 HOH HOH . R 4 HOH D 9 409 409 HOH HOH . R 4 HOH D 10 410 410 HOH HOH . R 4 HOH D 11 411 411 HOH HOH . R 4 HOH D 12 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . M 2 49.902 -10.496 -51.207 1 59.71 ? PA FDA 420 D 1 HETATM 2 O O1A FDA . . . M 2 51.212 -10.849 -50.548 1 60.26 ? O1A FDA 420 D 1 HETATM 3 O O2A FDA . . . M 2 49.131 -11.544 -51.948 1 58.2 ? O2A FDA 420 D 1 HETATM 4 O O5B FDA . . . M 2 48.956 -9.591 -50.23 1 60.12 ? O5B FDA 420 D 1 HETATM 5 C C5B FDA . . . M 2 47.533 -9.429 -50.293 1 61.13 ? C5B FDA 420 D 1 HETATM 6 C C4B FDA . . . M 2 47 -8.72 -49.035 1 63.13 ? C4B FDA 420 D 1 HETATM 7 O O4B FDA . . . M 2 46.908 -9.582 -47.859 1 62.98 ? O4B FDA 420 D 1 HETATM 8 C C3B FDA . . . M 2 47.912 -7.579 -48.619 1 63.01 ? C3B FDA 420 D 1 HETATM 9 O O3B FDA . . . M 2 47.129 -6.528 -48.053 1 64.16 ? O3B FDA 420 D 1 HETATM 10 C C2B FDA . . . M 2 48.832 -8.19 -47.566 1 61.97 ? C2B FDA 420 D 1 HETATM 11 O O2B FDA . . . M 2 49.372 -7.204 -46.684 1 56.66 ? O2B FDA 420 D 1 HETATM 12 C C1B FDA . . . M 2 47.906 -9.193 -46.903 1 62.86 ? C1B FDA 420 D 1 HETATM 13 N N9A FDA . . . M 2 48.676 -10.345 -46.338 1 65.34 ? N9A FDA 420 D 1 HETATM 14 C C8A FDA . . . M 2 49.564 -11.182 -46.899 1 65.35 ? C8A FDA 420 D 1 HETATM 15 N N7A FDA . . . M 2 49.989 -12.069 -45.949 1 65.64 ? N7A FDA 420 D 1 HETATM 16 C C5A FDA . . . M 2 49.355 -11.764 -44.779 1 67.69 ? C5A FDA 420 D 1 HETATM 17 C C6A FDA . . . M 2 49.359 -12.258 -43.449 1 67.39 ? C6A FDA 420 D 1 HETATM 18 N N6A FDA . . . M 2 50.136 -13.309 -43.078 1 66.4 ? N6A FDA 420 D 1 HETATM 19 N N1A FDA . . . M 2 48.569 -11.668 -42.507 1 66.35 ? N1A FDA 420 D 1 HETATM 20 C C2A FDA . . . M 2 47.788 -10.62 -42.803 1 66.67 ? C2A FDA 420 D 1 HETATM 21 N N3A FDA . . . M 2 47.763 -10.124 -44.049 1 65.88 ? N3A FDA 420 D 1 HETATM 22 C C4A FDA . . . M 2 48.537 -10.671 -45.044 1 67.09 ? C4A FDA 420 D 1 HETATM 23 N N1 FDA . . . M 2 58.666 -7.303 -56.876 1 60.42 ? N1 FDA 420 D 1 HETATM 24 C C2 FDA . . . M 2 59.903 -7.591 -57.377 1 60.59 ? C2 FDA 420 D 1 HETATM 25 O O2 FDA . . . M 2 60.449 -8.706 -57.191 1 57.86 ? O2 FDA 420 D 1 HETATM 26 N N3 FDA . . . M 2 60.575 -6.653 -58.083 1 62.68 ? N3 FDA 420 D 1 HETATM 27 C C4 FDA . . . M 2 60.025 -5.431 -58.31 1 63.28 ? C4 FDA 420 D 1 HETATM 28 O O4 FDA . . . M 2 60.692 -4.627 -58.99 1 65.49 ? O4 FDA 420 D 1 HETATM 29 C C4X FDA . . . M 2 58.753 -5.105 -57.792 1 62.26 ? C4X FDA 420 D 1 HETATM 30 N N5 FDA . . . M 2 58.19 -3.882 -57.915 1 60.48 ? N5 FDA 420 D 1 HETATM 31 C C5X FDA . . . M 2 56.836 -3.739 -57.865 1 60.3 ? C5X FDA 420 D 1 HETATM 32 C C6 FDA . . . M 2 56.179 -2.822 -58.711 1 59.47 ? C6 FDA 420 D 1 HETATM 33 C C7 FDA . . . M 2 54.782 -2.818 -58.825 1 59.51 ? C7 FDA 420 D 1 HETATM 34 C C7M FDA . . . M 2 54.08 -1.84 -59.726 1 60.16 ? C7M FDA 420 D 1 HETATM 35 C C8 FDA . . . M 2 54.021 -3.706 -58.088 1 58.73 ? C8 FDA 420 D 1 HETATM 36 C C8M FDA . . . M 2 52.524 -3.69 -58.202 1 56.18 ? C8M FDA 420 D 1 HETATM 37 C C9 FDA . . . M 2 54.66 -4.607 -57.247 1 59.59 ? C9 FDA 420 D 1 HETATM 38 C C9A FDA . . . M 2 56.063 -4.64 -57.127 1 60.03 ? C9A FDA 420 D 1 HETATM 39 N N10 FDA . . . M 2 56.703 -5.836 -56.691 1 62.16 ? N10 FDA 420 D 1 HETATM 40 C C10 FDA . . . M 2 58.068 -6.087 -57.063 1 62.07 ? C10 FDA 420 D 1 HETATM 41 C C1' FDA . . . M 2 55.975 -6.799 -55.843 1 61.22 ? C1' FDA 420 D 1 HETATM 42 C C2' FDA . . . M 2 55.652 -6.274 -54.433 1 60.94 ? C2' FDA 420 D 1 HETATM 43 O O2' FDA . . . M 2 56.719 -6.538 -53.492 1 62.85 ? O2' FDA 420 D 1 HETATM 44 C C3' FDA . . . M 2 54.419 -7.008 -53.952 1 59.25 ? C3' FDA 420 D 1 HETATM 45 O O3' FDA . . . M 2 53.373 -6.453 -54.711 1 56.23 ? O3' FDA 420 D 1 HETATM 46 C C4' FDA . . . M 2 54.108 -6.893 -52.449 1 58.76 ? C4' FDA 420 D 1 HETATM 47 O O4' FDA . . . M 2 55.117 -7.551 -51.683 1 56.79 ? O4' FDA 420 D 1 HETATM 48 C C5' FDA . . . M 2 52.748 -7.498 -52.121 1 58.78 ? C5' FDA 420 D 1 HETATM 49 O O5' FDA . . . M 2 52.664 -8.863 -52.564 1 59.96 ? O5' FDA 420 D 1 HETATM 50 P P FDA . . . M 2 51.373 -9.442 -53.383 1 61.88 ? P FDA 420 D 1 HETATM 51 O O1P FDA . . . M 2 50.871 -8.582 -54.525 1 60.98 ? O1P FDA 420 D 1 HETATM 52 O O2P FDA . . . M 2 51.655 -10.893 -53.684 1 61.99 ? O2P FDA 420 D 1 HETATM 53 O O3P FDA . . . M 2 50.235 -9.316 -52.253 1 62.27 ? O3P FDA 420 D 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 649 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #