data_3R7M # _model_server_result.job_id CmyLAdYF1oiZrZo0ANO5Xw _model_server_result.datetime_utc '2024-10-18 04:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3R7M # _exptl.entry_id 3R7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R7M _cell.length_a 58.381 _cell.length_b 64.476 _cell.length_c 96.853 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 3R7M _atom_sites.fract_transf_matrix[1][1] 0.017129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 SUZ A 1 332 1 SUZ SUZ . D 4 EDO A 1 333 1 EDO EDO . E 4 EDO A 1 334 2 EDO EDO . F 5 HOH A 1 335 1 HOH HOH . F 5 HOH A 2 336 2 HOH HOH . F 5 HOH A 3 337 3 HOH HOH . F 5 HOH A 4 338 4 HOH HOH . F 5 HOH A 5 339 6 HOH HOH . F 5 HOH A 6 340 7 HOH HOH . F 5 HOH A 7 341 8 HOH HOH . F 5 HOH A 8 342 9 HOH HOH . F 5 HOH A 9 343 10 HOH HOH . F 5 HOH A 10 344 11 HOH HOH . F 5 HOH A 11 345 12 HOH HOH . F 5 HOH A 12 346 13 HOH HOH . F 5 HOH A 13 347 14 HOH HOH . F 5 HOH A 14 348 15 HOH HOH . F 5 HOH A 15 349 16 HOH HOH . F 5 HOH A 16 350 17 HOH HOH . F 5 HOH A 17 351 18 HOH HOH . F 5 HOH A 18 352 19 HOH HOH . F 5 HOH A 19 353 20 HOH HOH . F 5 HOH A 20 354 21 HOH HOH . F 5 HOH A 21 355 22 HOH HOH . F 5 HOH A 22 356 23 HOH HOH . F 5 HOH A 23 357 25 HOH HOH . F 5 HOH A 24 358 26 HOH HOH . F 5 HOH A 25 359 27 HOH HOH . F 5 HOH A 26 360 28 HOH HOH . F 5 HOH A 27 361 29 HOH HOH . F 5 HOH A 28 362 30 HOH HOH . F 5 HOH A 29 363 31 HOH HOH . F 5 HOH A 30 364 32 HOH HOH . F 5 HOH A 31 365 33 HOH HOH . F 5 HOH A 32 366 34 HOH HOH . F 5 HOH A 33 367 35 HOH HOH . F 5 HOH A 34 368 36 HOH HOH . F 5 HOH A 35 369 37 HOH HOH . F 5 HOH A 36 370 38 HOH HOH . F 5 HOH A 37 371 39 HOH HOH . F 5 HOH A 38 372 40 HOH HOH . F 5 HOH A 39 373 41 HOH HOH . F 5 HOH A 40 374 42 HOH HOH . F 5 HOH A 41 375 43 HOH HOH . F 5 HOH A 42 376 44 HOH HOH . F 5 HOH A 43 377 45 HOH HOH . F 5 HOH A 44 378 46 HOH HOH . F 5 HOH A 45 379 47 HOH HOH . F 5 HOH A 46 380 48 HOH HOH . F 5 HOH A 47 381 49 HOH HOH . F 5 HOH A 48 382 50 HOH HOH . F 5 HOH A 49 383 51 HOH HOH . F 5 HOH A 50 384 52 HOH HOH . F 5 HOH A 51 385 53 HOH HOH . F 5 HOH A 52 386 54 HOH HOH . F 5 HOH A 53 387 55 HOH HOH . F 5 HOH A 54 388 56 HOH HOH . F 5 HOH A 55 389 57 HOH HOH . F 5 HOH A 56 390 58 HOH HOH . F 5 HOH A 57 391 59 HOH HOH . F 5 HOH A 58 392 60 HOH HOH . F 5 HOH A 59 393 61 HOH HOH . F 5 HOH A 60 394 62 HOH HOH . F 5 HOH A 61 395 63 HOH HOH . F 5 HOH A 62 396 64 HOH HOH . F 5 HOH A 63 397 65 HOH HOH . F 5 HOH A 64 398 66 HOH HOH . F 5 HOH A 65 399 68 HOH HOH . F 5 HOH A 66 400 69 HOH HOH . F 5 HOH A 67 401 70 HOH HOH . F 5 HOH A 68 402 71 HOH HOH . F 5 HOH A 69 403 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -1.776 -3.688 3.14 1 13.26 ? PA NAP 700 A 1 HETATM 2 O O1A NAP . . . B 2 -3.191 -3.51 3.355 1 15.15 ? O1A NAP 700 A 1 HETATM 3 O O2A NAP . . . B 2 -1.356 -5.194 2.935 1 10.62 ? O2A NAP 700 A 1 HETATM 4 O O5B NAP . . . B 2 -1.145 -2.84 1.897 1 13.12 ? O5B NAP 700 A 1 HETATM 5 C C5B NAP . . . B 2 0.246 -3.117 1.461 1 12.87 ? C5B NAP 700 A 1 HETATM 6 C C4B NAP . . . B 2 0.66 -1.912 0.498 1 12.79 ? C4B NAP 700 A 1 HETATM 7 O O4B NAP . . . B 2 -0.399 -2.063 -0.507 1 12.36 ? O4B NAP 700 A 1 HETATM 8 C C3B NAP . . . B 2 0.275 -0.595 1.095 1 11.48 ? C3B NAP 700 A 1 HETATM 9 O O3B NAP . . . B 2 1.381 0.057 1.742 1 15.45 ? O3B NAP 700 A 1 HETATM 10 C C2B NAP . . . B 2 -0.213 0.189 -0.144 1 14.13 ? C2B NAP 700 A 1 HETATM 11 O O2B NAP . . . B 2 0.798 1.158 -0.626 1 16.81 ? O2B NAP 700 A 1 HETATM 12 C C1B NAP . . . B 2 -0.354 -0.831 -1.208 1 16.19 ? C1B NAP 700 A 1 HETATM 13 N N9A NAP . . . B 2 -1.687 -0.642 -1.902 1 17.71 ? N9A NAP 700 A 1 HETATM 14 C C8A NAP . . . B 2 -2.871 -0.234 -1.382 1 18.52 ? C8A NAP 700 A 1 HETATM 15 N N7A NAP . . . B 2 -3.774 -0.265 -2.356 1 17.22 ? N7A NAP 700 A 1 HETATM 16 C C5A NAP . . . B 2 -3.153 -0.649 -3.474 1 16.01 ? C5A NAP 700 A 1 HETATM 17 C C6A NAP . . . B 2 -3.579 -0.805 -4.79 1 20.4 ? C6A NAP 700 A 1 HETATM 18 N N6A NAP . . . B 2 -4.886 -0.598 -5.146 1 21.6 ? N6A NAP 700 A 1 HETATM 19 N N1A NAP . . . B 2 -2.669 -1.225 -5.693 1 21.72 ? N1A NAP 700 A 1 HETATM 20 C C2A NAP . . . B 2 -1.352 -1.448 -5.385 1 22.5 ? C2A NAP 700 A 1 HETATM 21 N N3A NAP . . . B 2 -0.904 -1.3 -4.13 1 18.87 ? N3A NAP 700 A 1 HETATM 22 C C4A NAP . . . B 2 -1.82 -0.895 -3.183 1 17.09 ? C4A NAP 700 A 1 HETATM 23 O O3 NAP . . . B 2 -1.048 -3.078 4.443 1 14.52 ? O3 NAP 700 A 1 HETATM 24 P PN NAP . . . B 2 -0.825 -3.492 5.971 1 14.83 ? PN NAP 700 A 1 HETATM 25 O O1N NAP . . . B 2 -0.552 -2.156 6.557 1 17.14 ? O1N NAP 700 A 1 HETATM 26 O O2N NAP . . . B 2 0.078 -4.672 6.232 1 18.14 ? O2N NAP 700 A 1 HETATM 27 O O5D NAP . . . B 2 -2.409 -3.974 6.383 1 13.17 ? O5D NAP 700 A 1 HETATM 28 C C5D NAP . . . B 2 -3.492 -2.967 6.392 1 14.72 ? C5D NAP 700 A 1 HETATM 29 C C4D NAP . . . B 2 -3.948 -2.571 7.818 1 11.38 ? C4D NAP 700 A 1 HETATM 30 O O4D NAP . . . B 2 -4.195 -3.739 8.621 1 15.33 ? O4D NAP 700 A 1 HETATM 31 C C3D NAP . . . B 2 -2.804 -2.058 8.614 1 11.9 ? C3D NAP 700 A 1 HETATM 32 O O3D NAP . . . B 2 -2.61 -0.707 8.154 1 3.22 ? O3D NAP 700 A 1 HETATM 33 C C2D NAP . . . B 2 -3.39 -1.907 9.983 1 10.51 ? C2D NAP 700 A 1 HETATM 34 O O2D NAP . . . B 2 -4.527 -0.998 9.929 1 15.92 ? O2D NAP 700 A 1 HETATM 35 C C1D NAP . . . B 2 -3.906 -3.316 10.016 1 11.2 ? C1D NAP 700 A 1 HETATM 36 N N1N NAP . . . B 2 -2.846 -4.257 10.376 1 11.99 ? N1N NAP 700 A 1 HETATM 37 C C2N NAP . . . B 2 -3.02 -4.818 11.648 1 13.78 ? C2N NAP 700 A 1 HETATM 38 C C3N NAP . . . B 2 -2.079 -5.731 12.11 1 14.35 ? C3N NAP 700 A 1 HETATM 39 C C7N NAP . . . B 2 -2.345 -6.379 13.474 1 16.24 ? C7N NAP 700 A 1 HETATM 40 O O7N NAP . . . B 2 -1.409 -6.916 14.057 1 15.9 ? O7N NAP 700 A 1 HETATM 41 N N7N NAP . . . B 2 -3.674 -6.478 13.866 1 17.05 ? N7N NAP 700 A 1 HETATM 42 C C4N NAP . . . B 2 -0.943 -6.059 11.346 1 14.9 ? C4N NAP 700 A 1 HETATM 43 C C5N NAP . . . B 2 -0.764 -5.48 10.076 1 13.44 ? C5N NAP 700 A 1 HETATM 44 C C6N NAP . . . B 2 -1.715 -4.581 9.593 1 12.55 ? C6N NAP 700 A 1 HETATM 45 P P2B NAP . . . B 2 0.348 2.746 -0.702 1 20.61 ? P2B NAP 700 A 1 HETATM 46 O O1X NAP . . . B 2 0.118 3.385 0.663 1 19.65 ? O1X NAP 700 A 1 HETATM 47 O O2X NAP . . . B 2 1.625 3.303 -1.499 1 21.58 ? O2X NAP 700 A 1 HETATM 48 O O3X NAP . . . B 2 -0.921 2.755 -1.7 1 21.19 ? O3X NAP 700 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #