data_3R7O # _model_server_result.job_id NTC2JFkyet_ILZrYe8_1gg _model_server_result.datetime_utc '2024-12-04 04:08:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3R7O # _exptl.entry_id 3R7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.656 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2R)-1,4-dioxan-2-ylmethyl]-N-methyl-N'-{5-oxo-3-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl}sulfuric diamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R7O _cell.length_a 42.671 _cell.length_b 64.875 _cell.length_c 110.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 186 A GLU 1233 1_555 A N PTR 187 A PTR 1234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C PTR 187 A PTR 1234 1_555 A N PTR 188 A PTR 1235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C PTR 188 A PTR 1235 1_555 A N SER 189 A SER 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C28 H32 N6 O5 S' _chem_comp.formula_weight 564.656 _chem_comp.id M61 _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2R)-1,4-dioxan-2-ylmethyl]-N-methyl-N'-{5-oxo-3-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]-5H-benzo[4,5]cyclohepta[1,2-b]pyridin-7-yl}sulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 M61 doub 218 n y C C4 M61 sing 219 n y C C14 M61 sing 220 n n N C1 M61 sing 221 n y N C2 M61 doub 222 n y O C9 M61 doub 223 n n S N16 M61 sing 224 n n S O18 M61 doub 225 n n S O19 M61 doub 226 n n S N20 M61 sing 227 n n C2 C3 M61 sing 228 n y C2 C5 M61 sing 229 n n C3 C4 M61 doub 230 n y C3 C9 M61 sing 231 n n C5 C6 M61 doub 232 n n C6 C7 M61 sing 233 n n C7 C8 M61 doub 234 n y C7 C10 M61 sing 235 n y C8 C9 M61 sing 236 n n C8 C13 M61 sing 237 n y C10 C11 M61 doub 238 n y C11 C12 M61 sing 239 n y C12 C13 M61 doub 240 n y C12 N20 M61 sing 241 n n C14 C27 M61 doub 242 n y C14 C30 M61 sing 243 n y C15 N16 M61 sing 244 n n N16 C17 M61 sing 245 n n C17 C21 M61 sing 246 n n C21 C22 M61 sing 247 n n C21 O26 M61 sing 248 n n C22 O23 M61 sing 249 n n O23 C24 M61 sing 250 n n C24 C25 M61 sing 251 n n C25 O26 M61 sing 252 n n C27 N28 M61 sing 253 n y N28 N29 M61 sing 254 n y N28 C31 M61 sing 255 n n N29 C30 M61 doub 256 n y C31 C32 M61 sing 257 n n C31 C36 M61 sing 258 n n C32 C33 M61 sing 259 n n C33 N34 M61 sing 260 n n N34 C35 M61 sing 261 n n C35 C36 M61 sing 262 n n C1 H1 M61 sing 263 n n C4 H4 M61 sing 264 n n C5 H5 M61 sing 265 n n C6 H6 M61 sing 266 n n C10 H10 M61 sing 267 n n C11 H11 M61 sing 268 n n C13 H13 M61 sing 269 n n C15 H15 M61 sing 270 n n C15 H15A M61 sing 271 n n C15 H15B M61 sing 272 n n C17 H17 M61 sing 273 n n C17 H17A M61 sing 274 n n N20 HN20 M61 sing 275 n n C21 H21 M61 sing 276 n n C22 H22 M61 sing 277 n n C22 H22A M61 sing 278 n n C24 H24 M61 sing 279 n n C24 H24A M61 sing 280 n n C25 H25 M61 sing 281 n n C25 H25A M61 sing 282 n n C27 H27 M61 sing 283 n n C30 H30 M61 sing 284 n n C31 H31 M61 sing 285 n n C32 H32 M61 sing 286 n n C32 H32A M61 sing 287 n n C33 H33 M61 sing 288 n n C33 H33A M61 sing 289 n n N34 HN34 M61 sing 290 n n C35 H35 M61 sing 291 n n C35 H35A M61 sing 292 n n C36 H36 M61 sing 293 n n C36 H36A M61 sing 294 n n # _atom_sites.entry_id 3R7O _atom_sites.fract_transf_matrix[1][1] 0.023435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M61 A 1 1 1 M61 M61 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 1355 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C M61 . . . B 2 -4.443 -8.361 -16.555 1 39.08 ? C M61 1 A 1 HETATM 2 N N M61 . . . B 2 -6.776 -8.924 -16.665 1 42.78 ? N M61 1 A 1 HETATM 3 O O M61 . . . B 2 -5.14 -6.467 -13.105 1 47.92 ? O M61 1 A 1 HETATM 4 S S M61 . . . B 2 -6.277 -2.031 -10.975 1 40.14 ? S M61 1 A 1 HETATM 5 C C1 M61 . . . B 2 -5.509 -9.064 -17.073 1 29.62 ? C1 M61 1 A 1 HETATM 6 C C2 M61 . . . B 2 -7.007 -8.038 -15.686 1 28.11 ? C2 M61 1 A 1 HETATM 7 C C3 M61 . . . B 2 -5.985 -7.352 -15.046 1 35.95 ? C3 M61 1 A 1 HETATM 8 C C4 M61 . . . B 2 -4.686 -7.521 -15.487 1 38.51 ? C4 M61 1 A 1 HETATM 9 C C5 M61 . . . B 2 -8.425 -7.968 -15.395 1 33.18 ? C5 M61 1 A 1 HETATM 10 C C6 M61 . . . B 2 -9.093 -7.11 -14.622 1 30.42 ? C6 M61 1 A 1 HETATM 11 C C7 M61 . . . B 2 -8.603 -5.996 -13.836 1 27.4 ? C7 M61 1 A 1 HETATM 12 C C8 M61 . . . B 2 -7.292 -5.702 -13.496 1 48.15 ? C8 M61 1 A 1 HETATM 13 C C9 M61 . . . B 2 -6.114 -6.508 -13.851 1 55.57 ? C9 M61 1 A 1 HETATM 14 C C10 M61 . . . B 2 -9.601 -5.137 -13.429 1 38.94 ? C10 M61 1 A 1 HETATM 15 C C11 M61 . . . B 2 -9.314 -4.03 -12.671 1 32.91 ? C11 M61 1 A 1 HETATM 16 C C12 M61 . . . B 2 -8.017 -3.773 -12.289 1 34.26 ? C12 M61 1 A 1 HETATM 17 C C13 M61 . . . B 2 -7.005 -4.603 -12.71 1 36.94 ? C13 M61 1 A 1 HETATM 18 C C14 M61 . . . B 2 -3.113 -8.512 -17.085 1 43.15 ? C14 M61 1 A 1 HETATM 19 C C15 M61 . . . B 2 -6.597 -0.599 -13.27 1 44.41 ? C15 M61 1 A 1 HETATM 20 N N16 M61 . . . B 2 -5.654 -1.344 -12.415 1 61.1 ? N16 M61 1 A 1 HETATM 21 C C17 M61 . . . B 2 -4.665 -2.118 -13.193 1 54.56 ? C17 M61 1 A 1 HETATM 22 O O18 M61 . . . B 2 -6.632 -0.944 -10.082 1 40.81 ? O18 M61 1 A 1 HETATM 23 O O19 M61 . . . B 2 -5.38 -3.073 -10.517 1 35.32 ? O19 M61 1 A 1 HETATM 24 N N20 M61 . . . B 2 -7.816 -2.625 -11.454 1 34.17 ? N20 M61 1 A 1 HETATM 25 C C21 M61 . . . B 2 -3.345 -1.378 -13.132 1 80.34 ? C21 M61 1 A 1 HETATM 26 C C22 M61 . . . B 2 -2.984 -0.832 -14.5 1 52.81 ? C22 M61 1 A 1 HETATM 27 O O23 M61 . . . B 2 -1.754 -0.122 -14.4 1 76.02 ? O23 M61 1 A 1 HETATM 28 C C24 M61 . . . B 2 -0.73 -1.025 -13.992 1 56.59 ? C24 M61 1 A 1 HETATM 29 C C25 M61 . . . B 2 -1.088 -1.588 -12.629 1 72.1 ? C25 M61 1 A 1 HETATM 30 O O26 M61 . . . B 2 -2.325 -2.286 -12.723 1 59.12 ? O26 M61 1 A 1 HETATM 31 C C27 M61 . . . B 2 -2.797 -9.217 -18.224 1 29.05 ? C27 M61 1 A 1 HETATM 32 N N28 M61 . . . B 2 -1.453 -9.034 -18.385 1 56.54 ? N28 M61 1 A 1 HETATM 33 N N29 M61 . . . B 2 -0.881 -8.255 -17.449 1 39.55 ? N29 M61 1 A 1 HETATM 34 C C30 M61 . . . B 2 -1.895 -7.938 -16.644 1 37.63 ? C30 M61 1 A 1 HETATM 35 C C31 M61 . . . B 2 -0.65 -9.571 -19.471 1 58.03 ? C31 M61 1 A 1 HETATM 36 C C32 M61 . . . B 2 0.39 -10.539 -18.927 1 42.44 ? C32 M61 1 A 1 HETATM 37 C C33 M61 . . . B 2 1.417 -10.941 -19.969 1 53.06 ? C33 M61 1 A 1 HETATM 38 N N34 M61 . . . B 2 2.004 -9.707 -20.548 1 59.21 ? N34 M61 1 A 1 HETATM 39 C C35 M61 . . . B 2 0.978 -8.897 -21.26 1 69.49 ? C35 M61 1 A 1 HETATM 40 C C36 M61 . . . B 2 -0.014 -8.415 -20.222 1 43.81 ? C36 M61 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #