data_3R7T # _model_server_result.job_id O13-4Mz8XpTOSy6lpQW0lg _model_server_result.datetime_utc '2024-11-09 02:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":425}' # _entry.id 3R7T # _exptl.entry_id 3R7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3R7T _cell.length_a 127.232 _cell.length_b 127.232 _cell.length_c 122.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 127.232 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 127.232 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C LEU 58 A LEU 55 1_555 A N MSE 59 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 59 A MSE 56 1_555 A N PRO 60 A PRO 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C GLU 86 A GLU 83 1_555 A N MSE 87 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 87 A MSE 84 1_555 A N ALA 88 A ALA 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C GLU 173 A GLU 170 1_555 A N MSE 174 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 174 A MSE 171 1_555 A N LEU 175 A LEU 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C ARG 205 A ARG 202 1_555 A N MSE 206 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C MSE 206 A MSE 203 1_555 A N LEU 207 A LEU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C SER 225 A SER 222 1_555 A N MSE 226 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 A C MSE 226 A MSE 223 1_555 A N LEU 227 A LEU 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C LEU 328 A LEU 325 1_555 A N MSE 329 A MSE 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 329 A MSE 326 1_555 A N LYS 330 A LYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C GLY 350 A GLY 347 1_555 A N MSE 351 A MSE 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C MSE 351 A MSE 348 1_555 A N GLU 352 A GLU 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C GLU 369 A GLU 366 1_555 A N MSE 370 A MSE 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 A C MSE 370 A MSE 367 1_555 A N ASP 371 A ASP 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3R7T _atom_sites.fract_transf_matrix[1][1] 0.00786 _atom_sites.fract_transf_matrix[1][2] 0.004538 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 421 421 CIT CIT . C 3 PGE A 1 422 422 PGE PGE . D 3 PGE A 1 423 423 PGE PGE . E 4 PEG A 1 424 424 PEG PEG . F 5 GOL A 1 425 425 GOL GOL . G 4 PEG A 1 426 426 PEG PEG . H 6 CL A 1 427 427 CL CL . I 7 HOH A 1 417 1 HOH HOH . I 7 HOH A 2 418 2 HOH HOH . I 7 HOH A 3 419 3 HOH HOH . I 7 HOH A 4 420 4 HOH HOH . I 7 HOH A 5 428 5 HOH HOH . I 7 HOH A 6 429 6 HOH HOH . I 7 HOH A 7 430 7 HOH HOH . I 7 HOH A 8 431 8 HOH HOH . I 7 HOH A 9 432 9 HOH HOH . I 7 HOH A 10 433 10 HOH HOH . I 7 HOH A 11 434 11 HOH HOH . I 7 HOH A 12 435 12 HOH HOH . I 7 HOH A 13 436 13 HOH HOH . I 7 HOH A 14 437 14 HOH HOH . I 7 HOH A 15 438 15 HOH HOH . I 7 HOH A 16 439 16 HOH HOH . I 7 HOH A 17 440 17 HOH HOH . I 7 HOH A 18 441 18 HOH HOH . I 7 HOH A 19 442 19 HOH HOH . I 7 HOH A 20 443 20 HOH HOH . I 7 HOH A 21 444 21 HOH HOH . I 7 HOH A 22 445 22 HOH HOH . I 7 HOH A 23 446 23 HOH HOH . I 7 HOH A 24 447 24 HOH HOH . I 7 HOH A 25 448 25 HOH HOH . I 7 HOH A 26 449 26 HOH HOH . I 7 HOH A 27 450 27 HOH HOH . I 7 HOH A 28 451 28 HOH HOH . I 7 HOH A 29 452 29 HOH HOH . I 7 HOH A 30 453 30 HOH HOH . I 7 HOH A 31 454 31 HOH HOH . I 7 HOH A 32 455 32 HOH HOH . I 7 HOH A 33 456 33 HOH HOH . I 7 HOH A 34 457 34 HOH HOH . I 7 HOH A 35 458 35 HOH HOH . I 7 HOH A 36 459 36 HOH HOH . I 7 HOH A 37 460 37 HOH HOH . I 7 HOH A 38 461 38 HOH HOH . I 7 HOH A 39 462 39 HOH HOH . I 7 HOH A 40 463 40 HOH HOH . I 7 HOH A 41 464 41 HOH HOH . I 7 HOH A 42 465 42 HOH HOH . I 7 HOH A 43 466 43 HOH HOH . I 7 HOH A 44 467 44 HOH HOH . I 7 HOH A 45 468 45 HOH HOH . I 7 HOH A 46 469 46 HOH HOH . I 7 HOH A 47 470 47 HOH HOH . I 7 HOH A 48 471 48 HOH HOH . I 7 HOH A 49 472 49 HOH HOH . I 7 HOH A 50 473 50 HOH HOH . I 7 HOH A 51 474 51 HOH HOH . I 7 HOH A 52 475 52 HOH HOH . I 7 HOH A 53 476 53 HOH HOH . I 7 HOH A 54 477 54 HOH HOH . I 7 HOH A 55 478 55 HOH HOH . I 7 HOH A 56 479 56 HOH HOH . I 7 HOH A 57 480 57 HOH HOH . I 7 HOH A 58 481 58 HOH HOH . I 7 HOH A 59 482 59 HOH HOH . I 7 HOH A 60 483 60 HOH HOH . I 7 HOH A 61 484 61 HOH HOH . I 7 HOH A 62 485 62 HOH HOH . I 7 HOH A 63 486 63 HOH HOH . I 7 HOH A 64 487 64 HOH HOH . I 7 HOH A 65 488 65 HOH HOH . I 7 HOH A 66 489 66 HOH HOH . I 7 HOH A 67 490 67 HOH HOH . I 7 HOH A 68 491 68 HOH HOH . I 7 HOH A 69 492 69 HOH HOH . I 7 HOH A 70 493 70 HOH HOH . I 7 HOH A 71 494 71 HOH HOH . I 7 HOH A 72 495 72 HOH HOH . I 7 HOH A 73 496 73 HOH HOH . I 7 HOH A 74 497 74 HOH HOH . I 7 HOH A 75 498 75 HOH HOH . I 7 HOH A 76 499 76 HOH HOH . I 7 HOH A 77 500 77 HOH HOH . I 7 HOH A 78 501 78 HOH HOH . I 7 HOH A 79 502 79 HOH HOH . I 7 HOH A 80 503 80 HOH HOH . I 7 HOH A 81 504 81 HOH HOH . I 7 HOH A 82 505 82 HOH HOH . I 7 HOH A 83 506 83 HOH HOH . I 7 HOH A 84 507 84 HOH HOH . I 7 HOH A 85 508 85 HOH HOH . I 7 HOH A 86 509 86 HOH HOH . I 7 HOH A 87 510 87 HOH HOH . I 7 HOH A 88 511 88 HOH HOH . I 7 HOH A 89 512 89 HOH HOH . I 7 HOH A 90 513 90 HOH HOH . I 7 HOH A 91 514 91 HOH HOH . I 7 HOH A 92 515 92 HOH HOH . I 7 HOH A 93 516 93 HOH HOH . I 7 HOH A 94 517 94 HOH HOH . I 7 HOH A 95 518 95 HOH HOH . I 7 HOH A 96 519 96 HOH HOH . I 7 HOH A 97 520 97 HOH HOH . I 7 HOH A 98 521 98 HOH HOH . I 7 HOH A 99 522 99 HOH HOH . I 7 HOH A 100 523 100 HOH HOH . I 7 HOH A 101 524 101 HOH HOH . I 7 HOH A 102 525 102 HOH HOH . I 7 HOH A 103 526 103 HOH HOH . I 7 HOH A 104 527 104 HOH HOH . I 7 HOH A 105 528 105 HOH HOH . I 7 HOH A 106 529 106 HOH HOH . I 7 HOH A 107 530 107 HOH HOH . I 7 HOH A 108 531 108 HOH HOH . I 7 HOH A 109 532 109 HOH HOH . I 7 HOH A 110 533 110 HOH HOH . I 7 HOH A 111 534 111 HOH HOH . I 7 HOH A 112 535 112 HOH HOH . I 7 HOH A 113 536 113 HOH HOH . I 7 HOH A 114 537 114 HOH HOH . I 7 HOH A 115 538 115 HOH HOH . I 7 HOH A 116 539 116 HOH HOH . I 7 HOH A 117 540 117 HOH HOH . I 7 HOH A 118 541 118 HOH HOH . I 7 HOH A 119 542 119 HOH HOH . I 7 HOH A 120 543 120 HOH HOH . I 7 HOH A 121 544 121 HOH HOH . I 7 HOH A 122 545 122 HOH HOH . I 7 HOH A 123 546 123 HOH HOH . I 7 HOH A 124 547 124 HOH HOH . I 7 HOH A 125 548 125 HOH HOH . I 7 HOH A 126 549 126 HOH HOH . I 7 HOH A 127 550 127 HOH HOH . I 7 HOH A 128 551 128 HOH HOH . I 7 HOH A 129 552 129 HOH HOH . I 7 HOH A 130 553 130 HOH HOH . I 7 HOH A 131 554 131 HOH HOH . I 7 HOH A 132 555 132 HOH HOH . I 7 HOH A 133 556 133 HOH HOH . I 7 HOH A 134 557 134 HOH HOH . I 7 HOH A 135 558 135 HOH HOH . I 7 HOH A 136 559 136 HOH HOH . I 7 HOH A 137 560 137 HOH HOH . I 7 HOH A 138 561 138 HOH HOH . I 7 HOH A 139 562 139 HOH HOH . I 7 HOH A 140 563 140 HOH HOH . I 7 HOH A 141 564 141 HOH HOH . I 7 HOH A 142 565 142 HOH HOH . I 7 HOH A 143 566 143 HOH HOH . I 7 HOH A 144 567 144 HOH HOH . I 7 HOH A 145 568 145 HOH HOH . I 7 HOH A 146 569 146 HOH HOH . I 7 HOH A 147 570 147 HOH HOH . I 7 HOH A 148 571 148 HOH HOH . I 7 HOH A 149 572 149 HOH HOH . I 7 HOH A 150 573 150 HOH HOH . I 7 HOH A 151 574 151 HOH HOH . I 7 HOH A 152 575 152 HOH HOH . I 7 HOH A 153 576 153 HOH HOH . I 7 HOH A 154 577 154 HOH HOH . I 7 HOH A 155 578 155 HOH HOH . I 7 HOH A 156 579 156 HOH HOH . I 7 HOH A 157 580 157 HOH HOH . I 7 HOH A 158 581 158 HOH HOH . I 7 HOH A 159 582 159 HOH HOH . I 7 HOH A 160 583 160 HOH HOH . I 7 HOH A 161 584 161 HOH HOH . I 7 HOH A 162 585 162 HOH HOH . I 7 HOH A 163 586 163 HOH HOH . I 7 HOH A 164 587 164 HOH HOH . I 7 HOH A 165 588 165 HOH HOH . I 7 HOH A 166 589 166 HOH HOH . I 7 HOH A 167 590 167 HOH HOH . I 7 HOH A 168 591 168 HOH HOH . I 7 HOH A 169 592 169 HOH HOH . I 7 HOH A 170 593 170 HOH HOH . I 7 HOH A 171 594 171 HOH HOH . I 7 HOH A 172 595 172 HOH HOH . I 7 HOH A 173 596 173 HOH HOH . I 7 HOH A 174 597 174 HOH HOH . I 7 HOH A 175 598 175 HOH HOH . I 7 HOH A 176 599 176 HOH HOH . I 7 HOH A 177 600 177 HOH HOH . I 7 HOH A 178 601 178 HOH HOH . I 7 HOH A 179 602 179 HOH HOH . I 7 HOH A 180 603 180 HOH HOH . I 7 HOH A 181 604 181 HOH HOH . I 7 HOH A 182 605 182 HOH HOH . I 7 HOH A 183 606 183 HOH HOH . I 7 HOH A 184 607 184 HOH HOH . I 7 HOH A 185 608 185 HOH HOH . I 7 HOH A 186 609 186 HOH HOH . I 7 HOH A 187 610 187 HOH HOH . I 7 HOH A 188 611 188 HOH HOH . I 7 HOH A 189 612 189 HOH HOH . I 7 HOH A 190 613 190 HOH HOH . I 7 HOH A 191 614 191 HOH HOH . I 7 HOH A 192 615 192 HOH HOH . I 7 HOH A 193 616 193 HOH HOH . I 7 HOH A 194 617 194 HOH HOH . I 7 HOH A 195 618 195 HOH HOH . I 7 HOH A 196 619 196 HOH HOH . I 7 HOH A 197 620 197 HOH HOH . I 7 HOH A 198 621 198 HOH HOH . I 7 HOH A 199 622 199 HOH HOH . I 7 HOH A 200 623 200 HOH HOH . I 7 HOH A 201 624 201 HOH HOH . I 7 HOH A 202 625 202 HOH HOH . I 7 HOH A 203 626 203 HOH HOH . I 7 HOH A 204 627 204 HOH HOH . I 7 HOH A 205 628 205 HOH HOH . I 7 HOH A 206 629 206 HOH HOH . I 7 HOH A 207 630 207 HOH HOH . I 7 HOH A 208 631 208 HOH HOH . I 7 HOH A 209 632 209 HOH HOH . I 7 HOH A 210 633 210 HOH HOH . I 7 HOH A 211 634 211 HOH HOH . I 7 HOH A 212 635 212 HOH HOH . I 7 HOH A 213 636 213 HOH HOH . I 7 HOH A 214 637 214 HOH HOH . I 7 HOH A 215 638 215 HOH HOH . I 7 HOH A 216 639 216 HOH HOH . I 7 HOH A 217 640 217 HOH HOH . I 7 HOH A 218 641 218 HOH HOH . I 7 HOH A 219 642 219 HOH HOH . I 7 HOH A 220 643 220 HOH HOH . I 7 HOH A 221 644 221 HOH HOH . I 7 HOH A 222 645 222 HOH HOH . I 7 HOH A 223 646 223 HOH HOH . I 7 HOH A 224 647 224 HOH HOH . I 7 HOH A 225 648 225 HOH HOH . I 7 HOH A 226 649 226 HOH HOH . I 7 HOH A 227 650 227 HOH HOH . I 7 HOH A 228 651 228 HOH HOH . I 7 HOH A 229 652 229 HOH HOH . I 7 HOH A 230 653 230 HOH HOH . I 7 HOH A 231 654 231 HOH HOH . I 7 HOH A 232 655 232 HOH HOH . I 7 HOH A 233 656 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 76.991 -1.671 19.498 1 62.24 ? C1 GOL 425 A 1 HETATM 2 O O1 GOL . . . F 5 78.25 -1.906 18.883 1 66.62 ? O1 GOL 425 A 1 HETATM 3 C C2 GOL . . . F 5 77.082 -0.64 20.636 1 62.39 ? C2 GOL 425 A 1 HETATM 4 O O2 GOL . . . F 5 75.803 -0.094 20.893 1 66.77 ? O2 GOL 425 A 1 HETATM 5 C C3 GOL . . . F 5 77.649 -1.255 21.917 1 63.14 ? C3 GOL 425 A 1 HETATM 6 O O3 GOL . . . F 5 76.997 -0.738 23.06 1 57.05 ? O3 GOL 425 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #