data_3R8D
#
_model_server_result.job_id            KSzgQuo_3ShDbJbfHrZIbw 
_model_server_result.datetime_utc      '2025-07-14 13:23:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3R8D 
#
_exptl.entry_id    3R8D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.771 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-CHLORO-2-(1-FURO[2,3-C]PYRIDIN-5-YL-ETHYLSULFANYL)-PYRIMIDIN-4-YLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R8D 
_cell.length_a            92.284 
_cell.length_b            92.284 
_cell.length_c            84.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H11 Cl N4 O S' 
_chem_comp.formula_weight    306.771 
_chem_comp.id                PNU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-CHLORO-2-(1-FURO[2,3-C]PYRIDIN-5-YL-ETHYLSULFANYL)-PYRIMIDIN-4-YLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 PNU doub 260 n y 
C1 N6 PNU sing 261 n y 
C1 S17 PNU sing 262 n n 
N2 C3 PNU sing 263 n y 
C3 C4 PNU doub 264 n y 
C3 N18 PNU sing 265 n n 
C4 C5 PNU sing 266 n y 
C4 HC4 PNU sing 267 n n 
C5 N6 PNU doub 268 n y 
C5 CL19 PNU sing 269 n n 
C7 C8 PNU doub 270 n y 
C7 C12 PNU sing 271 n y 
C7 O14 PNU sing 272 n y 
C8 N9 PNU sing 273 n y 
C8 HC8 PNU sing 274 n n 
N9 C10 PNU doub 275 n y 
C10 C11 PNU sing 276 n y 
C10 C16 PNU sing 277 n n 
C11 C12 PNU doub 278 n y 
C11 H11C PNU sing 279 n n 
C12 C13 PNU sing 280 n y 
C13 C15 PNU doub 281 n y 
C13 H13C PNU sing 282 n n 
O14 C15 PNU sing 283 n y 
C15 H15C PNU sing 284 n n 
C16 S17 PNU sing 285 n n 
C16 C21 PNU sing 286 n n 
C16 H16C PNU sing 287 n n 
N18 H181 PNU sing 288 n n 
N18 H182 PNU sing 289 n n 
C21 H211 PNU sing 290 n n 
C21 H212 PNU sing 291 n n 
C21 H213 PNU sing 292 n n 
#
_atom_sites.entry_id                     3R8D 
_atom_sites.fract_transf_matrix[1][1]    0.010836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PNU A 1 1 1 PNU PNU . 
C 3 HOH A 1 3 3 HOH HOH . 
C 3 HOH A 2 4 4 HOH HOH . 
C 3 HOH A 3 5 5 HOH HOH . 
C 3 HOH A 4 7 7 HOH HOH . 
C 3 HOH A 5 8 8 HOH HOH . 
C 3 HOH A 6 11 11 HOH HOH . 
C 3 HOH A 7 13 13 HOH HOH . 
C 3 HOH A 8 15 15 HOH HOH . 
C 3 HOH A 9 28 28 HOH HOH . 
C 3 HOH A 10 30 30 HOH HOH . 
C 3 HOH A 11 32 32 HOH HOH . 
C 3 HOH A 12 34 34 HOH HOH . 
C 3 HOH A 13 37 37 HOH HOH . 
C 3 HOH A 14 38 38 HOH HOH . 
C 3 HOH A 15 435 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PNU . . . B 2 -13.295 -9.41 -22.892 1 73.27 ? C1 PNU 1 A 1 
HETATM 2 N N2 PNU . . . B 2 -12.266 -10.239 -23.131 1 71.16 ? N2 PNU 1 A 1 
HETATM 3 C C3 PNU . . . B 2 -11.024 -9.913 -22.747 1 73.27 ? C3 PNU 1 A 1 
HETATM 4 C C4 PNU . . . B 2 -10.801 -8.711 -22.094 1 71.99 ? C4 PNU 1 A 1 
HETATM 5 C C5 PNU . . . B 2 -11.883 -7.872 -21.856 1 73.04 ? C5 PNU 1 A 1 
HETATM 6 N N6 PNU . . . B 2 -13.105 -8.241 -22.261 1 72.9 ? N6 PNU 1 A 1 
HETATM 7 C C7 PNU . . . B 2 -20.041 -9.34 -23.547 1 63.12 ? C7 PNU 1 A 1 
HETATM 8 C C8 PNU . . . B 2 -19.359 -9.178 -22.348 1 64.97 ? C8 PNU 1 A 1 
HETATM 9 N N9 PNU . . . B 2 -18.074 -8.864 -22.347 1 63.98 ? N9 PNU 1 A 1 
HETATM 10 C C10 PNU . . . B 2 -17.392 -8.694 -23.49 1 64.49 ? C10 PNU 1 A 1 
HETATM 11 C C11 PNU . . . B 2 -18.025 -8.844 -24.72 1 64.1 ? C11 PNU 1 A 1 
HETATM 12 C C12 PNU . . . B 2 -19.372 -9.172 -24.747 1 62.39 ? C12 PNU 1 A 1 
HETATM 13 C C13 PNU . . . B 2 -20.237 -9.38 -25.738 1 63.87 ? C13 PNU 1 A 1 
HETATM 14 O O14 PNU . . . B 2 -21.333 -9.654 -23.85 1 62.89 ? O14 PNU 1 A 1 
HETATM 15 C C15 PNU . . . B 2 -21.429 -9.672 -25.218 1 63.38 ? C15 PNU 1 A 1 
HETATM 16 C C16 PNU . . . B 2 -15.907 -8.332 -23.442 1 66.47 ? C16 PNU 1 A 1 
HETATM 17 S S17 PNU . . . B 2 -14.905 -9.863 -23.406 1 73.96 ? S17 PNU 1 A 1 
HETATM 18 N N18 PNU . . . B 2 -10.01 -10.741 -22.99 1 74.37 ? N18 PNU 1 A 1 
HETATM 19 CL CL19 PNU . . . B 2 -11.651 -6.363 -21.046 1 75.69 ? CL19 PNU 1 A 1 
HETATM 20 C C21 PNU . . . B 2 -15.55 -7.472 -24.657 1 64.39 ? C21 PNU 1 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           20 
#