data_3R8G # _model_server_result.job_id 5RObsBspeRe5Wo92hxcp9A _model_server_result.datetime_utc '2024-11-22 19:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3R8G # _exptl.entry_id 3R8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R8G _cell.length_a 57.794 _cell.length_b 64.533 _cell.length_c 96.177 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 279 n n PA O2A NAP sing 280 n n PA O5B NAP sing 281 n n PA O3 NAP sing 282 n n O2A HOA2 NAP sing 283 n n O5B C5B NAP sing 284 n n C5B C4B NAP sing 285 n n C5B H51A NAP sing 286 n n C5B H52A NAP sing 287 n n C4B O4B NAP sing 288 n n C4B C3B NAP sing 289 n n C4B H4B NAP sing 290 n n O4B C1B NAP sing 291 n n C3B O3B NAP sing 292 n n C3B C2B NAP sing 293 n n C3B H3B NAP sing 294 n n O3B HO3A NAP sing 295 n n C2B O2B NAP sing 296 n n C2B C1B NAP sing 297 n n C2B H2B NAP sing 298 n n O2B P2B NAP sing 299 n n C1B N9A NAP sing 300 n n C1B H1B NAP sing 301 n n N9A C8A NAP sing 302 n y N9A C4A NAP sing 303 n y C8A N7A NAP doub 304 n y C8A H8A NAP sing 305 n n N7A C5A NAP sing 306 n y C5A C6A NAP sing 307 n y C5A C4A NAP doub 308 n y C6A N6A NAP sing 309 n n C6A N1A NAP doub 310 n y N6A H61A NAP sing 311 n n N6A H62A NAP sing 312 n n N1A C2A NAP sing 313 n y C2A N3A NAP doub 314 n y C2A H2A NAP sing 315 n n N3A C4A NAP sing 316 n y O3 PN NAP sing 317 n n PN O1N NAP doub 318 n n PN O2N NAP sing 319 n n PN O5D NAP sing 320 n n O5D C5D NAP sing 321 n n C5D C4D NAP sing 322 n n C5D H51N NAP sing 323 n n C5D H52N NAP sing 324 n n C4D O4D NAP sing 325 n n C4D C3D NAP sing 326 n n C4D H4D NAP sing 327 n n O4D C1D NAP sing 328 n n C3D O3D NAP sing 329 n n C3D C2D NAP sing 330 n n C3D H3D NAP sing 331 n n O3D HO3N NAP sing 332 n n C2D O2D NAP sing 333 n n C2D C1D NAP sing 334 n n C2D H2D NAP sing 335 n n O2D HO2N NAP sing 336 n n C1D N1N NAP sing 337 n n C1D H1D NAP sing 338 n n N1N C2N NAP sing 339 n y N1N C6N NAP doub 340 n y C2N C3N NAP doub 341 n y C2N H2N NAP sing 342 n n C3N C7N NAP sing 343 n n C3N C4N NAP sing 344 n y C7N O7N NAP doub 345 n n C7N N7N NAP sing 346 n n N7N H71N NAP sing 347 n n N7N H72N NAP sing 348 n n C4N C5N NAP doub 349 n y C4N H4N NAP sing 350 n n C5N C6N NAP sing 351 n y C5N H5N NAP sing 352 n n C6N H6N NAP sing 353 n n P2B O1X NAP doub 354 n n P2B O2X NAP sing 355 n n P2B O3X NAP sing 356 n n O2X HOP2 NAP sing 357 n n O3X HOP3 NAP sing 358 n n # _atom_sites.entry_id 3R8G _atom_sites.fract_transf_matrix[1][1] 0.017303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 IZP A 1 409 409 IZP IBP . D 4 EDO A 1 332 1 EDO EDO . E 5 HOH A 1 333 1 HOH HOH . E 5 HOH A 2 334 2 HOH HOH . E 5 HOH A 3 335 3 HOH HOH . E 5 HOH A 4 336 4 HOH HOH . E 5 HOH A 5 337 5 HOH HOH . E 5 HOH A 6 338 6 HOH HOH . E 5 HOH A 7 339 7 HOH HOH . E 5 HOH A 8 340 8 HOH HOH . E 5 HOH A 9 341 9 HOH HOH . E 5 HOH A 10 342 10 HOH HOH . E 5 HOH A 11 343 11 HOH HOH . E 5 HOH A 12 344 12 HOH HOH . E 5 HOH A 13 345 13 HOH HOH . E 5 HOH A 14 346 14 HOH HOH . E 5 HOH A 15 347 15 HOH HOH . E 5 HOH A 16 348 16 HOH HOH . E 5 HOH A 17 349 17 HOH HOH . E 5 HOH A 18 350 18 HOH HOH . E 5 HOH A 19 351 19 HOH HOH . E 5 HOH A 20 352 20 HOH HOH . E 5 HOH A 21 353 21 HOH HOH . E 5 HOH A 22 354 22 HOH HOH . E 5 HOH A 23 355 23 HOH HOH . E 5 HOH A 24 356 24 HOH HOH . E 5 HOH A 25 357 25 HOH HOH . E 5 HOH A 26 358 26 HOH HOH . E 5 HOH A 27 359 27 HOH HOH . E 5 HOH A 28 360 28 HOH HOH . E 5 HOH A 29 361 29 HOH HOH . E 5 HOH A 30 362 30 HOH HOH . E 5 HOH A 31 363 31 HOH HOH . E 5 HOH A 32 364 32 HOH HOH . E 5 HOH A 33 365 33 HOH HOH . E 5 HOH A 34 366 34 HOH HOH . E 5 HOH A 35 367 35 HOH HOH . E 5 HOH A 36 368 36 HOH HOH . E 5 HOH A 37 369 37 HOH HOH . E 5 HOH A 38 370 38 HOH HOH . E 5 HOH A 39 371 39 HOH HOH . E 5 HOH A 40 372 40 HOH HOH . E 5 HOH A 41 373 41 HOH HOH . E 5 HOH A 42 374 42 HOH HOH . E 5 HOH A 43 375 43 HOH HOH . E 5 HOH A 44 376 44 HOH HOH . E 5 HOH A 45 377 45 HOH HOH . E 5 HOH A 46 378 46 HOH HOH . E 5 HOH A 47 379 47 HOH HOH . E 5 HOH A 48 380 48 HOH HOH . E 5 HOH A 49 381 49 HOH HOH . E 5 HOH A 50 382 50 HOH HOH . E 5 HOH A 51 383 51 HOH HOH . E 5 HOH A 52 384 52 HOH HOH . E 5 HOH A 53 385 53 HOH HOH . E 5 HOH A 54 386 54 HOH HOH . E 5 HOH A 55 387 55 HOH HOH . E 5 HOH A 56 388 56 HOH HOH . E 5 HOH A 57 389 57 HOH HOH . E 5 HOH A 58 390 58 HOH HOH . E 5 HOH A 59 391 59 HOH HOH . E 5 HOH A 60 392 60 HOH HOH . E 5 HOH A 61 393 61 HOH HOH . E 5 HOH A 62 394 62 HOH HOH . E 5 HOH A 63 395 63 HOH HOH . E 5 HOH A 64 396 64 HOH HOH . E 5 HOH A 65 397 65 HOH HOH . E 5 HOH A 66 398 66 HOH HOH . E 5 HOH A 67 399 67 HOH HOH . E 5 HOH A 68 400 68 HOH HOH . E 5 HOH A 69 401 69 HOH HOH . E 5 HOH A 70 402 70 HOH HOH . E 5 HOH A 71 403 71 HOH HOH . E 5 HOH A 72 404 72 HOH HOH . E 5 HOH A 73 405 73 HOH HOH . E 5 HOH A 74 406 74 HOH HOH . E 5 HOH A 75 407 75 HOH HOH . E 5 HOH A 76 408 76 HOH HOH . E 5 HOH A 77 410 77 HOH HOH . E 5 HOH A 78 411 78 HOH HOH . E 5 HOH A 79 412 79 HOH HOH . E 5 HOH A 80 413 80 HOH HOH . E 5 HOH A 81 414 81 HOH HOH . E 5 HOH A 82 415 82 HOH HOH . E 5 HOH A 83 416 83 HOH HOH . E 5 HOH A 84 417 84 HOH HOH . E 5 HOH A 85 418 85 HOH HOH . E 5 HOH A 86 419 86 HOH HOH . E 5 HOH A 87 420 87 HOH HOH . E 5 HOH A 88 421 88 HOH HOH . E 5 HOH A 89 422 89 HOH HOH . E 5 HOH A 90 423 90 HOH HOH . E 5 HOH A 91 424 91 HOH HOH . E 5 HOH A 92 425 92 HOH HOH . E 5 HOH A 93 426 93 HOH HOH . E 5 HOH A 94 427 94 HOH HOH . E 5 HOH A 95 428 95 HOH HOH . E 5 HOH A 96 429 96 HOH HOH . E 5 HOH A 97 430 97 HOH HOH . E 5 HOH A 98 431 98 HOH HOH . E 5 HOH A 99 432 99 HOH HOH . E 5 HOH A 100 433 100 HOH HOH . E 5 HOH A 101 434 101 HOH HOH . E 5 HOH A 102 435 102 HOH HOH . E 5 HOH A 103 436 103 HOH HOH . E 5 HOH A 104 437 104 HOH HOH . E 5 HOH A 105 438 105 HOH HOH . E 5 HOH A 106 439 106 HOH HOH . E 5 HOH A 107 440 107 HOH HOH . E 5 HOH A 108 441 108 HOH HOH . E 5 HOH A 109 442 109 HOH HOH . E 5 HOH A 110 443 110 HOH HOH . E 5 HOH A 111 444 111 HOH HOH . E 5 HOH A 112 445 112 HOH HOH . E 5 HOH A 113 446 113 HOH HOH . E 5 HOH A 114 447 114 HOH HOH . E 5 HOH A 115 448 115 HOH HOH . E 5 HOH A 116 449 116 HOH HOH . E 5 HOH A 117 450 117 HOH HOH . E 5 HOH A 118 451 118 HOH HOH . E 5 HOH A 119 452 119 HOH HOH . E 5 HOH A 120 453 120 HOH HOH . E 5 HOH A 121 454 121 HOH HOH . E 5 HOH A 122 455 122 HOH HOH . E 5 HOH A 123 456 123 HOH HOH . E 5 HOH A 124 457 124 HOH HOH . E 5 HOH A 125 458 125 HOH HOH . E 5 HOH A 126 459 126 HOH HOH . E 5 HOH A 127 460 127 HOH HOH . E 5 HOH A 128 461 128 HOH HOH . E 5 HOH A 129 462 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 1.653 3.641 2.8 1 14.01 ? PA NAP 700 A 1 HETATM 2 O O1A NAP . . . B 2 1.136 5.051 2.724 1 11.73 ? O1A NAP 700 A 1 HETATM 3 O O2A NAP . . . B 2 3.097 3.45 2.88 1 13.1 ? O2A NAP 700 A 1 HETATM 4 O O5B NAP . . . B 2 0.925 2.789 1.618 1 12.32 ? O5B NAP 700 A 1 HETATM 5 C C5B NAP . . . B 2 -0.479 2.99 1.249 1 16.05 ? C5B NAP 700 A 1 HETATM 6 C C4B NAP . . . B 2 -0.845 1.879 0.182 1 15.16 ? C4B NAP 700 A 1 HETATM 7 O O4B NAP . . . B 2 0.076 2.052 -0.835 1 15.37 ? O4B NAP 700 A 1 HETATM 8 C C3B NAP . . . B 2 -0.523 0.463 0.725 1 15.33 ? C3B NAP 700 A 1 HETATM 9 O O3B NAP . . . B 2 -1.71 -0.066 1.354 1 15.97 ? O3B NAP 700 A 1 HETATM 10 C C2B NAP . . . B 2 -0.051 -0.32 -0.511 1 17.64 ? C2B NAP 700 A 1 HETATM 11 O O2B NAP . . . B 2 -1.02 -1.255 -0.934 1 18.96 ? O2B NAP 700 A 1 HETATM 12 C C1B NAP . . . B 2 0.028 0.792 -1.519 1 15.28 ? C1B NAP 700 A 1 HETATM 13 N N9A NAP . . . B 2 1.348 0.73 -2.326 1 15.44 ? N9A NAP 700 A 1 HETATM 14 C C8A NAP . . . B 2 2.543 0.382 -1.797 1 13.28 ? C8A NAP 700 A 1 HETATM 15 N N7A NAP . . . B 2 3.43 0.407 -2.78 1 12.14 ? N7A NAP 700 A 1 HETATM 16 C C5A NAP . . . B 2 2.795 0.75 -3.932 1 16.99 ? C5A NAP 700 A 1 HETATM 17 C C6A NAP . . . B 2 3.208 0.909 -5.255 1 17.75 ? C6A NAP 700 A 1 HETATM 18 N N6A NAP . . . B 2 4.5 0.748 -5.65 1 20.4 ? N6A NAP 700 A 1 HETATM 19 N N1A NAP . . . B 2 2.219 1.231 -6.163 1 17.33 ? N1A NAP 700 A 1 HETATM 20 C C2A NAP . . . B 2 0.943 1.463 -5.797 1 16.09 ? C2A NAP 700 A 1 HETATM 21 N N3A NAP . . . B 2 0.491 1.3 -4.558 1 13.13 ? N3A NAP 700 A 1 HETATM 22 C C4A NAP . . . B 2 1.452 0.977 -3.622 1 17.29 ? C4A NAP 700 A 1 HETATM 23 O O3 NAP . . . B 2 0.881 3.039 4.083 1 13 ? O3 NAP 700 A 1 HETATM 24 P PN NAP . . . B 2 0.75 3.304 5.669 1 14.25 ? PN NAP 700 A 1 HETATM 25 O O1N NAP . . . B 2 -0.167 4.458 5.931 1 15.9 ? O1N NAP 700 A 1 HETATM 26 O O2N NAP . . . B 2 0.454 2.021 6.313 1 16.03 ? O2N NAP 700 A 1 HETATM 27 O O5D NAP . . . B 2 2.184 3.807 6.095 1 12.68 ? O5D NAP 700 A 1 HETATM 28 C C5D NAP . . . B 2 3.321 2.882 6.038 1 10.49 ? C5D NAP 700 A 1 HETATM 29 C C4D NAP . . . B 2 3.733 2.311 7.438 1 13.06 ? C4D NAP 700 A 1 HETATM 30 O O4D NAP . . . B 2 4.004 3.518 8.281 1 14.08 ? O4D NAP 700 A 1 HETATM 31 C C3D NAP . . . B 2 2.703 1.489 8.203 1 13.95 ? C3D NAP 700 A 1 HETATM 32 O O3D NAP . . . B 2 2.644 0.164 7.599 1 14.85 ? O3D NAP 700 A 1 HETATM 33 C C2D NAP . . . B 2 3.31 1.563 9.589 1 13.11 ? C2D NAP 700 A 1 HETATM 34 O O2D NAP . . . B 2 4.498 0.757 9.625 1 12.42 ? O2D NAP 700 A 1 HETATM 35 C C1D NAP . . . B 2 3.743 3.096 9.644 1 11.76 ? C1D NAP 700 A 1 HETATM 36 N N1N NAP . . . B 2 2.676 3.964 10.199 1 14.53 ? N1N NAP 700 A 1 HETATM 37 C C2N NAP . . . B 2 2.958 4.514 11.427 1 13.94 ? C2N NAP 700 A 1 HETATM 38 C C3N NAP . . . B 2 2.012 5.347 12.057 1 12.95 ? C3N NAP 700 A 1 HETATM 39 C C7N NAP . . . B 2 2.348 6.042 13.346 1 10.91 ? C7N NAP 700 A 1 HETATM 40 O O7N NAP . . . B 2 1.433 6.514 14.042 1 14.38 ? O7N NAP 700 A 1 HETATM 41 N N7N NAP . . . B 2 3.692 6.147 13.618 1 12.56 ? N7N NAP 700 A 1 HETATM 42 C C4N NAP . . . B 2 0.777 5.574 11.472 1 12.91 ? C4N NAP 700 A 1 HETATM 43 C C5N NAP . . . B 2 0.526 5.009 10.182 1 14.09 ? C5N NAP 700 A 1 HETATM 44 C C6N NAP . . . B 2 1.471 4.21 9.526 1 14.36 ? C6N NAP 700 A 1 HETATM 45 P P2B NAP . . . B 2 -0.525 -2.805 -1.213 1 18.64 ? P2B NAP 700 A 1 HETATM 46 O O1X NAP . . . B 2 0.682 -2.715 -2.181 1 19.23 ? O1X NAP 700 A 1 HETATM 47 O O2X NAP . . . B 2 -1.895 -3.377 -1.879 1 16.27 ? O2X NAP 700 A 1 HETATM 48 O O3X NAP . . . B 2 -0.316 -3.435 0.145 1 17.65 ? O3X NAP 700 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #