data_3R94 # _model_server_result.job_id AExPteeC2JxEjEXAPex_lA _model_server_result.datetime_utc '2024-11-23 22:18:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3r94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3R94 # _exptl.entry_id 3R94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3R94 _cell.length_a 56.865 _cell.length_b 63.77 _cell.length_c 95.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 278 n n PA O2A NAP sing 279 n n PA O5B NAP sing 280 n n PA O3 NAP sing 281 n n O2A HOA2 NAP sing 282 n n O5B C5B NAP sing 283 n n C5B C4B NAP sing 284 n n C5B H51A NAP sing 285 n n C5B H52A NAP sing 286 n n C4B O4B NAP sing 287 n n C4B C3B NAP sing 288 n n C4B H4B NAP sing 289 n n O4B C1B NAP sing 290 n n C3B O3B NAP sing 291 n n C3B C2B NAP sing 292 n n C3B H3B NAP sing 293 n n O3B HO3A NAP sing 294 n n C2B O2B NAP sing 295 n n C2B C1B NAP sing 296 n n C2B H2B NAP sing 297 n n O2B P2B NAP sing 298 n n C1B N9A NAP sing 299 n n C1B H1B NAP sing 300 n n N9A C8A NAP sing 301 n y N9A C4A NAP sing 302 n y C8A N7A NAP doub 303 n y C8A H8A NAP sing 304 n n N7A C5A NAP sing 305 n y C5A C6A NAP sing 306 n y C5A C4A NAP doub 307 n y C6A N6A NAP sing 308 n n C6A N1A NAP doub 309 n y N6A H61A NAP sing 310 n n N6A H62A NAP sing 311 n n N1A C2A NAP sing 312 n y C2A N3A NAP doub 313 n y C2A H2A NAP sing 314 n n N3A C4A NAP sing 315 n y O3 PN NAP sing 316 n n PN O1N NAP doub 317 n n PN O2N NAP sing 318 n n PN O5D NAP sing 319 n n O5D C5D NAP sing 320 n n C5D C4D NAP sing 321 n n C5D H51N NAP sing 322 n n C5D H52N NAP sing 323 n n C4D O4D NAP sing 324 n n C4D C3D NAP sing 325 n n C4D H4D NAP sing 326 n n O4D C1D NAP sing 327 n n C3D O3D NAP sing 328 n n C3D C2D NAP sing 329 n n C3D H3D NAP sing 330 n n O3D HO3N NAP sing 331 n n C2D O2D NAP sing 332 n n C2D C1D NAP sing 333 n n C2D H2D NAP sing 334 n n O2D HO2N NAP sing 335 n n C1D N1N NAP sing 336 n n C1D H1D NAP sing 337 n n N1N C2N NAP sing 338 n y N1N C6N NAP doub 339 n y C2N C3N NAP doub 340 n y C2N H2N NAP sing 341 n n C3N C7N NAP sing 342 n n C3N C4N NAP sing 343 n y C7N O7N NAP doub 344 n n C7N N7N NAP sing 345 n n N7N H71N NAP sing 346 n n N7N H72N NAP sing 347 n n C4N C5N NAP doub 348 n y C4N H4N NAP sing 349 n n C5N C6N NAP sing 350 n y C5N H5N NAP sing 351 n n C6N H6N NAP sing 352 n n P2B O1X NAP doub 353 n n P2B O2X NAP sing 354 n n P2B O3X NAP sing 355 n n O2X HOP2 NAP sing 356 n n O3X HOP3 NAP sing 357 n n # _atom_sites.entry_id 3R94 _atom_sites.fract_transf_matrix[1][1] 0.017586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 FLR A 1 332 332 FLR FLR . D 4 EDO A 1 333 333 EDO EDO . E 5 HOH A 1 334 334 HOH HOH . E 5 HOH A 2 335 335 HOH HOH . E 5 HOH A 3 336 336 HOH HOH . E 5 HOH A 4 337 337 HOH HOH . E 5 HOH A 5 338 338 HOH HOH . E 5 HOH A 6 339 339 HOH HOH . E 5 HOH A 7 340 340 HOH HOH . E 5 HOH A 8 341 341 HOH HOH . E 5 HOH A 9 342 342 HOH HOH . E 5 HOH A 10 343 343 HOH HOH . E 5 HOH A 11 344 344 HOH HOH . E 5 HOH A 12 345 345 HOH HOH . E 5 HOH A 13 346 346 HOH HOH . E 5 HOH A 14 347 347 HOH HOH . E 5 HOH A 15 348 348 HOH HOH . E 5 HOH A 16 349 349 HOH HOH . E 5 HOH A 17 350 350 HOH HOH . E 5 HOH A 18 351 351 HOH HOH . E 5 HOH A 19 352 352 HOH HOH . E 5 HOH A 20 353 353 HOH HOH . E 5 HOH A 21 354 354 HOH HOH . E 5 HOH A 22 355 355 HOH HOH . E 5 HOH A 23 356 356 HOH HOH . E 5 HOH A 24 357 357 HOH HOH . E 5 HOH A 25 358 358 HOH HOH . E 5 HOH A 26 359 359 HOH HOH . E 5 HOH A 27 360 360 HOH HOH . E 5 HOH A 28 361 361 HOH HOH . E 5 HOH A 29 362 362 HOH HOH . E 5 HOH A 30 363 363 HOH HOH . E 5 HOH A 31 364 364 HOH HOH . E 5 HOH A 32 365 365 HOH HOH . E 5 HOH A 33 366 366 HOH HOH . E 5 HOH A 34 367 367 HOH HOH . E 5 HOH A 35 368 368 HOH HOH . E 5 HOH A 36 369 369 HOH HOH . E 5 HOH A 37 370 370 HOH HOH . E 5 HOH A 38 371 371 HOH HOH . E 5 HOH A 39 372 372 HOH HOH . E 5 HOH A 40 373 373 HOH HOH . E 5 HOH A 41 374 374 HOH HOH . E 5 HOH A 42 375 375 HOH HOH . E 5 HOH A 43 376 376 HOH HOH . E 5 HOH A 44 377 377 HOH HOH . E 5 HOH A 45 378 378 HOH HOH . E 5 HOH A 46 379 379 HOH HOH . E 5 HOH A 47 380 380 HOH HOH . E 5 HOH A 48 381 381 HOH HOH . E 5 HOH A 49 382 382 HOH HOH . E 5 HOH A 50 383 383 HOH HOH . E 5 HOH A 51 384 384 HOH HOH . E 5 HOH A 52 385 385 HOH HOH . E 5 HOH A 53 386 386 HOH HOH . E 5 HOH A 54 387 387 HOH HOH . E 5 HOH A 55 388 388 HOH HOH . E 5 HOH A 56 389 389 HOH HOH . E 5 HOH A 57 390 390 HOH HOH . E 5 HOH A 58 391 391 HOH HOH . E 5 HOH A 59 392 392 HOH HOH . E 5 HOH A 60 393 393 HOH HOH . E 5 HOH A 61 394 394 HOH HOH . E 5 HOH A 62 395 395 HOH HOH . E 5 HOH A 63 396 396 HOH HOH . E 5 HOH A 64 397 397 HOH HOH . E 5 HOH A 65 398 398 HOH HOH . E 5 HOH A 66 399 399 HOH HOH . E 5 HOH A 67 400 400 HOH HOH . E 5 HOH A 68 401 401 HOH HOH . E 5 HOH A 69 402 402 HOH HOH . E 5 HOH A 70 403 403 HOH HOH . E 5 HOH A 71 404 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 27.128 28.518 2.807 1 19.03 ? PA NAP 700 A 1 HETATM 2 O O1A NAP . . . B 2 25.613 28.803 2.808 1 20.83 ? O1A NAP 700 A 1 HETATM 3 O O2A NAP . . . B 2 27.644 26.991 2.755 1 19.63 ? O2A NAP 700 A 1 HETATM 4 O O5B NAP . . . B 2 27.905 29.401 1.713 1 21.93 ? O5B NAP 700 A 1 HETATM 5 C C5B NAP . . . B 2 29.177 29.145 1.138 1 20.58 ? C5B NAP 700 A 1 HETATM 6 C C4B NAP . . . B 2 29.498 30.337 0.157 1 18.31 ? C4B NAP 700 A 1 HETATM 7 O O4B NAP . . . B 2 28.554 30.145 -0.88 1 17.9 ? O4B NAP 700 A 1 HETATM 8 C C3B NAP . . . B 2 29.088 31.702 0.723 1 19.41 ? C3B NAP 700 A 1 HETATM 9 O O3B NAP . . . B 2 30.176 32.367 1.391 1 20.51 ? O3B NAP 700 A 1 HETATM 10 C C2B NAP . . . B 2 28.706 32.464 -0.509 1 20.38 ? C2B NAP 700 A 1 HETATM 11 O O2B NAP . . . B 2 29.705 33.42 -0.964 1 21.72 ? O2B NAP 700 A 1 HETATM 12 C C1B NAP . . . B 2 28.551 31.394 -1.566 1 22.71 ? C1B NAP 700 A 1 HETATM 13 N N9A NAP . . . B 2 27.216 31.475 -2.265 1 20.37 ? N9A NAP 700 A 1 HETATM 14 C C8A NAP . . . B 2 26.001 31.744 -1.79 1 22.43 ? C8A NAP 700 A 1 HETATM 15 N N7A NAP . . . B 2 25.122 31.681 -2.796 1 21.26 ? N7A NAP 700 A 1 HETATM 16 C C5A NAP . . . B 2 25.819 31.375 -3.912 1 19.12 ? C5A NAP 700 A 1 HETATM 17 C C6A NAP . . . B 2 25.505 31.176 -5.257 1 21.4 ? C6A NAP 700 A 1 HETATM 18 N N6A NAP . . . B 2 24.198 31.283 -5.677 1 21.09 ? N6A NAP 700 A 1 HETATM 19 N N1A NAP . . . B 2 26.498 30.866 -6.115 1 21.76 ? N1A NAP 700 A 1 HETATM 20 C C2A NAP . . . B 2 27.783 30.742 -5.762 1 21.22 ? C2A NAP 700 A 1 HETATM 21 N N3A NAP . . . B 2 28.118 30.965 -4.454 1 19.95 ? N3A NAP 700 A 1 HETATM 22 C C4A NAP . . . B 2 27.147 31.258 -3.56 1 21.26 ? C4A NAP 700 A 1 HETATM 23 O O3 NAP . . . B 2 27.831 29.228 4.129 1 16.53 ? O3 NAP 700 A 1 HETATM 24 P PN NAP . . . B 2 27.929 28.991 5.686 1 17.96 ? PN NAP 700 A 1 HETATM 25 O O1N NAP . . . B 2 28.194 30.441 6.092 1 17.31 ? O1N NAP 700 A 1 HETATM 26 O O2N NAP . . . B 2 28.931 27.943 6.009 1 20.91 ? O2N NAP 700 A 1 HETATM 27 O O5D NAP . . . B 2 26.434 28.449 6.073 1 18.53 ? O5D NAP 700 A 1 HETATM 28 C C5D NAP . . . B 2 25.225 29.217 6.049 1 19.98 ? C5D NAP 700 A 1 HETATM 29 C C4D NAP . . . B 2 24.827 29.687 7.474 1 19.41 ? C4D NAP 700 A 1 HETATM 30 O O4D NAP . . . B 2 24.63 28.551 8.312 1 16.8 ? O4D NAP 700 A 1 HETATM 31 C C3D NAP . . . B 2 25.935 30.54 8.176 1 20.43 ? C3D NAP 700 A 1 HETATM 32 O O3D NAP . . . B 2 25.963 31.862 7.603 1 18.39 ? O3D NAP 700 A 1 HETATM 33 C C2D NAP . . . B 2 25.337 30.519 9.589 1 20.28 ? C2D NAP 700 A 1 HETATM 34 O O2D NAP . . . B 2 24.135 31.332 9.588 1 17.27 ? O2D NAP 700 A 1 HETATM 35 C C1D NAP . . . B 2 24.878 29.031 9.695 1 19.85 ? C1D NAP 700 A 1 HETATM 36 N N1N NAP . . . B 2 25.941 28.178 10.269 1 20.52 ? N1N NAP 700 A 1 HETATM 37 C C2N NAP . . . B 2 25.69 27.566 11.483 1 17.86 ? C2N NAP 700 A 1 HETATM 38 C C3N NAP . . . B 2 26.673 26.767 12.025 1 16.82 ? C3N NAP 700 A 1 HETATM 39 C C7N NAP . . . B 2 26.368 26.095 13.327 1 17.82 ? C7N NAP 700 A 1 HETATM 40 O O7N NAP . . . B 2 27.262 25.698 14.085 1 18.96 ? O7N NAP 700 A 1 HETATM 41 N N7N NAP . . . B 2 25.05 25.968 13.573 1 19.23 ? N7N NAP 700 A 1 HETATM 42 C C4N NAP . . . B 2 27.897 26.586 11.368 1 18.09 ? C4N NAP 700 A 1 HETATM 43 C C5N NAP . . . B 2 28.141 27.178 10.144 1 21.69 ? C5N NAP 700 A 1 HETATM 44 C C6N NAP . . . B 2 27.165 27.972 9.571 1 20.95 ? C6N NAP 700 A 1 HETATM 45 P P2B NAP . . . B 2 29.195 35.003 -1.166 1 21.49 ? P2B NAP 700 A 1 HETATM 46 O O1X NAP . . . B 2 28.862 35.596 0.132 1 23.79 ? O1X NAP 700 A 1 HETATM 47 O O2X NAP . . . B 2 30.334 35.614 -1.992 1 22.72 ? O2X NAP 700 A 1 HETATM 48 O O3X NAP . . . B 2 27.956 34.957 -2.155 1 18.71 ? O3X NAP 700 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #