data_3R9C
#
_model_server_result.job_id            y7BvCSbOqYJDiDC3MXlm5w 
_model_server_result.datetime_utc      '2024-10-13 13:18:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3r9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":452}' 
#
_entry.id    3R9C 
#
_exptl.entry_id    3R9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.684 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3R9C 
_cell.length_a            38.79 
_cell.length_b            85.79 
_cell.length_c            121.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3R9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 366 A CYS 366 1_555 B FE HEM . A HEM 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc2 K NA NA . A NA 425 1_555 B O2D HEM . A HEM 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc3 B FE HEM . A HEM 450 1_555 C N19 ECL . A ECL 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C18 H15 Cl3 N2 O' 
_chem_comp.formula_weight    381.684 
_chem_comp.id                ECL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     R-Econazole 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ECL doub 83 n y 
C1 C8 ECL sing 84 n n 
C1 C10 ECL sing 85 n y 
N1 C3 ECL sing 86 n y 
N1 C7 ECL sing 87 n y 
N1 C19 ECL sing 88 n n 
C2 C13 ECL sing 89 n y 
CL2 C11 ECL sing 90 n n 
C3 N19 ECL doub 91 n y 
CL4 C14 ECL sing 92 n n 
C5 C14 ECL doub 93 n y 
C5 C21 ECL sing 94 n y 
C6 C7 ECL doub 95 n y 
C6 N19 ECL sing 96 n y 
C8 O20 ECL sing 97 n n 
CL8 C16 ECL sing 98 n n 
C9 C10 ECL doub 99 n y 
C9 C11 ECL sing 100 n y 
C11 C13 ECL doub 101 n y 
C14 C15 ECL sing 102 n y 
C15 C16 ECL doub 103 n y 
C16 C17 ECL sing 104 n y 
C17 C20 ECL sing 105 n n 
C17 C21 ECL doub 106 n y 
C19 C20 ECL sing 107 n n 
C20 O20 ECL sing 108 n n 
C2 H2 ECL sing 109 n n 
C3 H3 ECL sing 110 n n 
C5 H5 ECL sing 111 n n 
C6 H6 ECL sing 112 n n 
C7 H7 ECL sing 113 n n 
C8 H8 ECL sing 114 n n 
C8 H8A ECL sing 115 n n 
C9 H9 ECL sing 116 n n 
C10 H10 ECL sing 117 n n 
C13 H13 ECL sing 118 n n 
C15 H15 ECL sing 119 n n 
C19 H19 ECL sing 120 n n 
C19 H19A ECL sing 121 n n 
C20 H20 ECL sing 122 n n 
C21 H21 ECL sing 123 n n 
#
_atom_sites.entry_id                     3R9C 
_atom_sites.fract_transf_matrix[1][1]    0.02578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 450 450 HEM HEM . 
C 3 ECL A 1 451 451 ECL ECN . 
D 3 ECL A 1 452 452 ECL ECN . 
E 4 EDO A 1 419 1 EDO EDO . 
F 4 EDO A 1 420 2 EDO EDO . 
G 4 EDO A 1 421 3 EDO EDO . 
H 4 EDO A 1 422 4 EDO EDO . 
I 4 EDO A 1 423 6 EDO EDO . 
J 4 EDO A 1 424 7 EDO EDO . 
K 5 NA A 1 425 1 NA NA . 
L 6 HOH A 1 426 1 HOH HOH . 
L 6 HOH A 2 427 2 HOH HOH . 
L 6 HOH A 3 428 3 HOH HOH . 
L 6 HOH A 4 429 4 HOH HOH . 
L 6 HOH A 5 430 5 HOH HOH . 
L 6 HOH A 6 431 7 HOH HOH . 
L 6 HOH A 7 432 8 HOH HOH . 
L 6 HOH A 8 433 9 HOH HOH . 
L 6 HOH A 9 434 10 HOH HOH . 
L 6 HOH A 10 435 12 HOH HOH . 
L 6 HOH A 11 436 13 HOH HOH . 
L 6 HOH A 12 437 14 HOH HOH . 
L 6 HOH A 13 438 15 HOH HOH . 
L 6 HOH A 14 439 17 HOH HOH . 
L 6 HOH A 15 440 18 HOH HOH . 
L 6 HOH A 16 441 19 HOH HOH . 
L 6 HOH A 17 442 20 HOH HOH . 
L 6 HOH A 18 443 21 HOH HOH . 
L 6 HOH A 19 444 22 HOH HOH . 
L 6 HOH A 20 445 23 HOH HOH . 
L 6 HOH A 21 446 24 HOH HOH . 
L 6 HOH A 22 447 25 HOH HOH . 
L 6 HOH A 23 448 26 HOH HOH . 
L 6 HOH A 24 449 27 HOH HOH . 
L 6 HOH A 25 453 28 HOH HOH . 
L 6 HOH A 26 454 29 HOH HOH . 
L 6 HOH A 27 455 30 HOH HOH . 
L 6 HOH A 28 456 31 HOH HOH . 
L 6 HOH A 29 457 32 HOH HOH . 
L 6 HOH A 30 458 33 HOH HOH . 
L 6 HOH A 31 459 35 HOH HOH . 
L 6 HOH A 32 460 36 HOH HOH . 
L 6 HOH A 33 461 37 HOH HOH . 
L 6 HOH A 34 462 38 HOH HOH . 
L 6 HOH A 35 463 39 HOH HOH . 
L 6 HOH A 36 464 40 HOH HOH . 
L 6 HOH A 37 465 41 HOH HOH . 
L 6 HOH A 38 466 42 HOH HOH . 
L 6 HOH A 39 467 43 HOH HOH . 
L 6 HOH A 40 468 44 HOH HOH . 
L 6 HOH A 41 469 45 HOH HOH . 
L 6 HOH A 42 470 48 HOH HOH . 
L 6 HOH A 43 471 49 HOH HOH . 
L 6 HOH A 44 472 50 HOH HOH . 
L 6 HOH A 45 473 52 HOH HOH . 
L 6 HOH A 46 474 53 HOH HOH . 
L 6 HOH A 47 475 54 HOH HOH . 
L 6 HOH A 48 476 55 HOH HOH . 
L 6 HOH A 49 477 56 HOH HOH . 
L 6 HOH A 50 478 57 HOH HOH . 
L 6 HOH A 51 479 58 HOH HOH . 
L 6 HOH A 52 480 59 HOH HOH . 
L 6 HOH A 53 481 61 HOH HOH . 
L 6 HOH A 54 482 62 HOH HOH . 
L 6 HOH A 55 483 63 HOH HOH . 
L 6 HOH A 56 484 64 HOH HOH . 
L 6 HOH A 57 485 67 HOH HOH . 
L 6 HOH A 58 486 69 HOH HOH . 
L 6 HOH A 59 487 70 HOH HOH . 
L 6 HOH A 60 488 71 HOH HOH . 
L 6 HOH A 61 489 73 HOH HOH . 
L 6 HOH A 62 490 74 HOH HOH . 
L 6 HOH A 63 491 75 HOH HOH . 
L 6 HOH A 64 492 76 HOH HOH . 
L 6 HOH A 65 493 78 HOH HOH . 
L 6 HOH A 66 494 79 HOH HOH . 
L 6 HOH A 67 495 80 HOH HOH . 
L 6 HOH A 68 496 81 HOH HOH . 
L 6 HOH A 69 497 84 HOH HOH . 
L 6 HOH A 70 498 86 HOH HOH . 
L 6 HOH A 71 499 87 HOH HOH . 
L 6 HOH A 72 500 90 HOH HOH . 
L 6 HOH A 73 501 95 HOH HOH . 
L 6 HOH A 74 502 96 HOH HOH . 
L 6 HOH A 75 503 97 HOH HOH . 
L 6 HOH A 76 504 99 HOH HOH . 
L 6 HOH A 77 505 102 HOH HOH . 
L 6 HOH A 78 506 103 HOH HOH . 
L 6 HOH A 79 507 104 HOH HOH . 
L 6 HOH A 80 508 105 HOH HOH . 
L 6 HOH A 81 509 106 HOH HOH . 
L 6 HOH A 82 510 110 HOH HOH . 
L 6 HOH A 83 511 114 HOH HOH . 
L 6 HOH A 84 512 115 HOH HOH . 
L 6 HOH A 85 513 116 HOH HOH . 
L 6 HOH A 86 514 117 HOH HOH . 
L 6 HOH A 87 515 122 HOH HOH . 
L 6 HOH A 88 516 125 HOH HOH . 
L 6 HOH A 89 517 127 HOH HOH . 
L 6 HOH A 90 518 128 HOH HOH . 
L 6 HOH A 91 519 131 HOH HOH . 
L 6 HOH A 92 520 132 HOH HOH . 
L 6 HOH A 93 521 133 HOH HOH . 
L 6 HOH A 94 522 134 HOH HOH . 
L 6 HOH A 95 523 135 HOH HOH . 
L 6 HOH A 96 524 136 HOH HOH . 
L 6 HOH A 97 525 137 HOH HOH . 
L 6 HOH A 98 526 138 HOH HOH . 
L 6 HOH A 99 527 139 HOH HOH . 
L 6 HOH A 100 528 140 HOH HOH . 
L 6 HOH A 101 529 141 HOH HOH . 
L 6 HOH A 102 530 142 HOH HOH . 
L 6 HOH A 103 531 143 HOH HOH . 
L 6 HOH A 104 532 144 HOH HOH . 
L 6 HOH A 105 533 145 HOH HOH . 
L 6 HOH A 106 534 146 HOH HOH . 
L 6 HOH A 107 535 147 HOH HOH . 
L 6 HOH A 108 536 148 HOH HOH . 
L 6 HOH A 109 537 149 HOH HOH . 
L 6 HOH A 110 538 150 HOH HOH . 
L 6 HOH A 111 539 151 HOH HOH . 
L 6 HOH A 112 540 152 HOH HOH . 
L 6 HOH A 113 541 153 HOH HOH . 
L 6 HOH A 114 542 154 HOH HOH . 
L 6 HOH A 115 543 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ECL . . . D 3 -0.223 0.582 38.464 1 38.43 ? C1 ECL 452 A 1 
HETATM 2 N N1 ECL . . . D 3 0.204 1.758 33.78 1 40.64 ? N1 ECL 452 A 1 
HETATM 3 C C2 ECL . . . D 3 0.022 -0.042 39.687 1 37.99 ? C2 ECL 452 A 1 
HETATM 4 CL CL2 ECL . . . D 3 -1.147 2.798 42.338 1 37.82 ? CL2 ECL 452 A 1 
HETATM 5 C C3 ECL . . . D 3 -0.117 2.961 34.258 1 40.55 ? C3 ECL 452 A 1 
HETATM 6 CL CL4 ECL . . . D 3 6.024 -3.616 35.683 1 44.02 ? CL4 ECL 452 A 1 
HETATM 7 C C5 ECL . . . D 3 4.491 -1.419 36.323 1 42.43 ? C5 ECL 452 A 1 
HETATM 8 C C6 ECL . . . D 3 -1.807 2.257 33.063 1 40.67 ? C6 ECL 452 A 1 
HETATM 9 C C7 ECL . . . D 3 -0.816 1.302 33.042 1 40.52 ? C7 ECL 452 A 1 
HETATM 10 C C8 ECL . . . D 3 0.08 -0.15 37.183 1 38.72 ? C8 ECL 452 A 1 
HETATM 11 CL CL8 ECL . . . D 3 1.226 -2.37 33.224 1 42.7 ? CL8 ECL 452 A 1 
HETATM 12 C C9 ECL . . . D 3 -1.029 2.551 39.598 1 37.62 ? C9 ECL 452 A 1 
HETATM 13 C C10 ECL . . . D 3 -0.748 1.875 38.416 1 38.07 ? C10 ECL 452 A 1 
HETATM 14 C C11 ECL . . . D 3 -0.785 1.927 40.818 1 37.73 ? C11 ECL 452 A 1 
HETATM 15 C C13 ECL . . . D 3 -0.26 0.635 40.87 1 37.7 ? C13 ECL 452 A 1 
HETATM 16 C C14 ECL . . . D 3 4.6 -2.543 35.508 1 42.81 ? C14 ECL 452 A 1 
HETATM 17 C C15 ECL . . . D 3 3.61 -2.833 34.568 1 42.49 ? C15 ECL 452 A 1 
HETATM 18 C C16 ECL . . . D 3 2.502 -1.996 34.439 1 42.15 ? C16 ECL 452 A 1 
HETATM 19 C C17 ECL . . . D 3 2.396 -0.871 35.252 1 41.55 ? C17 ECL 452 A 1 
HETATM 20 C C19 ECL . . . D 3 1.464 1.068 34.038 1 40.52 ? C19 ECL 452 A 1 
HETATM 21 N N19 ECL . . . D 3 -1.357 3.279 33.823 1 40.85 ? N19 ECL 452 A 1 
HETATM 22 C C20 ECL . . . D 3 1.216 0.02 35.118 1 40.64 ? C20 ECL 452 A 1 
HETATM 23 O O20 ECL . . . D 3 0.915 0.661 36.359 1 39.7 ? O20 ECL 452 A 1 
HETATM 24 C C21 ECL . . . D 3 3.388 -0.582 36.194 1 41.72 ? C21 ECL 452 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           555 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           24 
#