data_3RAB
#
_model_server_result.job_id            zuLNge_05Cm7a_7TyKJswA 
_model_server_result.datetime_utc      '2025-04-15 07:00:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rab 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":200}' 
#
_entry.id    3RAB 
#
_exptl.entry_id    3RAB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.2 
_cell.angle_gamma         90 
_cell.entry_id            3RAB 
_cell.length_a            88.9 
_cell.length_b            35 
_cell.length_c            58.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RAB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 19 A THR 36 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 A OG1 THR 37 A THR 54 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 C O2G GNP . A GNP 200 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 C O2B GNP . A GNP 200 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 D O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 D O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     3RAB 
_atom_sites.fract_transf_matrix[1][1]    0.011248 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003482 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017864 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 201 MG MG . 
C 3 GNP A 1 200 200 GNP GNP . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 303 303 HOH HOH . 
D 4 HOH A 5 304 304 HOH HOH . 
D 4 HOH A 6 305 305 HOH HOH . 
D 4 HOH A 7 306 306 HOH HOH . 
D 4 HOH A 8 307 307 HOH HOH . 
D 4 HOH A 9 308 308 HOH HOH . 
D 4 HOH A 10 309 309 HOH HOH . 
D 4 HOH A 11 310 310 HOH HOH . 
D 4 HOH A 12 312 312 HOH HOH . 
D 4 HOH A 13 313 313 HOH HOH . 
D 4 HOH A 14 314 314 HOH HOH . 
D 4 HOH A 15 315 315 HOH HOH . 
D 4 HOH A 16 316 316 HOH HOH . 
D 4 HOH A 17 317 317 HOH HOH . 
D 4 HOH A 18 318 318 HOH HOH . 
D 4 HOH A 19 319 319 HOH HOH . 
D 4 HOH A 20 320 320 HOH HOH . 
D 4 HOH A 21 321 321 HOH HOH . 
D 4 HOH A 22 322 322 HOH HOH . 
D 4 HOH A 23 323 323 HOH HOH . 
D 4 HOH A 24 324 324 HOH HOH . 
D 4 HOH A 25 326 326 HOH HOH . 
D 4 HOH A 26 327 327 HOH HOH . 
D 4 HOH A 27 328 328 HOH HOH . 
D 4 HOH A 28 329 329 HOH HOH . 
D 4 HOH A 29 331 331 HOH HOH . 
D 4 HOH A 30 332 332 HOH HOH . 
D 4 HOH A 31 333 333 HOH HOH . 
D 4 HOH A 32 334 334 HOH HOH . 
D 4 HOH A 33 335 335 HOH HOH . 
D 4 HOH A 34 337 337 HOH HOH . 
D 4 HOH A 35 338 338 HOH HOH . 
D 4 HOH A 36 339 339 HOH HOH . 
D 4 HOH A 37 342 342 HOH HOH . 
D 4 HOH A 38 343 343 HOH HOH . 
D 4 HOH A 39 344 344 HOH HOH . 
D 4 HOH A 40 345 345 HOH HOH . 
D 4 HOH A 41 346 346 HOH HOH . 
D 4 HOH A 42 348 348 HOH HOH . 
D 4 HOH A 43 349 349 HOH HOH . 
D 4 HOH A 44 350 350 HOH HOH . 
D 4 HOH A 45 351 351 HOH HOH . 
D 4 HOH A 46 353 353 HOH HOH . 
D 4 HOH A 47 355 355 HOH HOH . 
D 4 HOH A 48 359 359 HOH HOH . 
D 4 HOH A 49 360 360 HOH HOH . 
D 4 HOH A 50 362 362 HOH HOH . 
D 4 HOH A 51 364 364 HOH HOH . 
D 4 HOH A 52 367 367 HOH HOH . 
D 4 HOH A 53 369 369 HOH HOH . 
D 4 HOH A 54 370 370 HOH HOH . 
D 4 HOH A 55 371 371 HOH HOH . 
D 4 HOH A 56 373 373 HOH HOH . 
D 4 HOH A 57 374 374 HOH HOH . 
D 4 HOH A 58 375 375 HOH HOH . 
D 4 HOH A 59 377 377 HOH HOH . 
D 4 HOH A 60 378 378 HOH HOH . 
D 4 HOH A 61 380 380 HOH HOH . 
D 4 HOH A 62 383 383 HOH HOH . 
D 4 HOH A 63 384 384 HOH HOH . 
D 4 HOH A 64 386 386 HOH HOH . 
D 4 HOH A 65 387 387 HOH HOH . 
D 4 HOH A 66 390 390 HOH HOH . 
D 4 HOH A 67 395 395 HOH HOH . 
D 4 HOH A 68 398 398 HOH HOH . 
D 4 HOH A 69 399 399 HOH HOH . 
D 4 HOH A 70 403 403 HOH HOH . 
D 4 HOH A 71 406 406 HOH HOH . 
D 4 HOH A 72 502 502 HOH HOH . 
D 4 HOH A 73 504 504 HOH HOH . 
D 4 HOH A 74 505 505 HOH HOH . 
D 4 HOH A 75 506 506 HOH HOH . 
D 4 HOH A 76 507 507 HOH HOH . 
D 4 HOH A 77 509 509 HOH HOH . 
D 4 HOH A 78 510 510 HOH HOH . 
D 4 HOH A 79 512 512 HOH HOH . 
D 4 HOH A 80 513 513 HOH HOH . 
D 4 HOH A 81 515 515 HOH HOH . 
D 4 HOH A 82 517 517 HOH HOH . 
D 4 HOH A 83 518 518 HOH HOH . 
D 4 HOH A 84 519 519 HOH HOH . 
D 4 HOH A 85 521 521 HOH HOH . 
D 4 HOH A 86 523 523 HOH HOH . 
D 4 HOH A 87 524 524 HOH HOH . 
D 4 HOH A 88 525 525 HOH HOH . 
D 4 HOH A 89 526 526 HOH HOH . 
D 4 HOH A 90 528 528 HOH HOH . 
D 4 HOH A 91 529 529 HOH HOH . 
D 4 HOH A 92 531 531 HOH HOH . 
D 4 HOH A 93 535 535 HOH HOH . 
D 4 HOH A 94 537 537 HOH HOH . 
D 4 HOH A 95 538 538 HOH HOH . 
D 4 HOH A 96 541 541 HOH HOH . 
D 4 HOH A 97 542 542 HOH HOH . 
D 4 HOH A 98 543 543 HOH HOH . 
D 4 HOH A 99 547 547 HOH HOH . 
D 4 HOH A 100 548 548 HOH HOH . 
D 4 HOH A 101 549 549 HOH HOH . 
D 4 HOH A 102 551 551 HOH HOH . 
D 4 HOH A 103 554 554 HOH HOH . 
D 4 HOH A 104 556 556 HOH HOH . 
D 4 HOH A 105 558 558 HOH HOH . 
D 4 HOH A 106 559 559 HOH HOH . 
D 4 HOH A 107 560 560 HOH HOH . 
D 4 HOH A 108 561 561 HOH HOH . 
D 4 HOH A 109 564 564 HOH HOH . 
D 4 HOH A 110 565 565 HOH HOH . 
D 4 HOH A 111 566 566 HOH HOH . 
D 4 HOH A 112 568 568 HOH HOH . 
D 4 HOH A 113 571 571 HOH HOH . 
D 4 HOH A 114 572 572 HOH HOH . 
D 4 HOH A 115 576 576 HOH HOH . 
D 4 HOH A 116 577 577 HOH HOH . 
D 4 HOH A 117 579 579 HOH HOH . 
D 4 HOH A 118 580 580 HOH HOH . 
D 4 HOH A 119 582 582 HOH HOH . 
D 4 HOH A 120 584 584 HOH HOH . 
D 4 HOH A 121 586 586 HOH HOH . 
D 4 HOH A 122 587 587 HOH HOH . 
D 4 HOH A 123 588 588 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 7.142 -6.947 5.083 1 8.87 ? PG GNP 200 A 1 
HETATM 2 O O1G GNP . . . C 3 5.879 -7.655 4.79 1 3.23 ? O1G GNP 200 A 1 
HETATM 3 O O2G GNP . . . C 3 8.218 -7.254 4.127 1 7.72 ? O2G GNP 200 A 1 
HETATM 4 O O3G GNP . . . C 3 7.551 -6.97 6.503 1 6.91 ? O3G GNP 200 A 1 
HETATM 5 N N3B GNP . . . C 3 6.743 -5.366 4.776 1 9.62 ? N3B GNP 200 A 1 
HETATM 6 P PB GNP . . . C 3 7.457 -3.905 5.03 1 6.2 ? PB GNP 200 A 1 
HETATM 7 O O1B GNP . . . C 3 7.276 -3.543 6.454 1 8.5 ? O1B GNP 200 A 1 
HETATM 8 O O2B GNP . . . C 3 8.799 -3.918 4.458 1 6.38 ? O2B GNP 200 A 1 
HETATM 9 O O3A GNP . . . C 3 6.626 -2.82 4.16 1 5.48 ? O3A GNP 200 A 1 
HETATM 10 P PA GNP . . . C 3 6.92 -2.253 2.682 1 6.21 ? PA GNP 200 A 1 
HETATM 11 O O1A GNP . . . C 3 8.124 -1.376 2.682 1 3.11 ? O1A GNP 200 A 1 
HETATM 12 O O2A GNP . . . C 3 6.808 -3.358 1.71 1 5.92 ? O2A GNP 200 A 1 
HETATM 13 O O5' GNP . . . C 3 5.625 -1.332 2.57 1 7.24 ? O5' GNP 200 A 1 
HETATM 14 C C5' GNP . . . C 3 4.291 -1.821 2.616 1 5.65 ? C5' GNP 200 A 1 
HETATM 15 C C4' GNP . . . C 3 3.401 -0.814 1.928 1 7.1 ? C4' GNP 200 A 1 
HETATM 16 O O4' GNP . . . C 3 3.457 0.45 2.605 1 7.27 ? O4' GNP 200 A 1 
HETATM 17 C C3' GNP . . . C 3 3.873 -0.541 0.518 1 7.86 ? C3' GNP 200 A 1 
HETATM 18 O O3' GNP . . . C 3 2.7 -0.475 -0.278 1 8.87 ? O3' GNP 200 A 1 
HETATM 19 C C2' GNP . . . C 3 4.609 0.807 0.591 1 6.36 ? C2' GNP 200 A 1 
HETATM 20 O O2' GNP . . . C 3 4.397 1.608 -0.568 1 9.67 ? O2' GNP 200 A 1 
HETATM 21 C C1' GNP . . . C 3 3.915 1.505 1.745 1 6.39 ? C1' GNP 200 A 1 
HETATM 22 N N9 GNP . . . C 3 4.742 2.512 2.453 1 2.81 ? N9 GNP 200 A 1 
HETATM 23 C C8 GNP . . . C 3 5.969 2.353 3.039 1 4.18 ? C8 GNP 200 A 1 
HETATM 24 N N7 GNP . . . C 3 6.419 3.419 3.64 1 6.14 ? N7 GNP 200 A 1 
HETATM 25 C C5 GNP . . . C 3 5.422 4.37 3.438 1 5.67 ? C5 GNP 200 A 1 
HETATM 26 C C6 GNP . . . C 3 5.346 5.73 3.859 1 4.62 ? C6 GNP 200 A 1 
HETATM 27 O O6 GNP . . . C 3 6.163 6.386 4.504 1 6.34 ? O6 GNP 200 A 1 
HETATM 28 N N1 GNP . . . C 3 4.163 6.334 3.446 1 5.5 ? N1 GNP 200 A 1 
HETATM 29 C C2 GNP . . . C 3 3.165 5.715 2.722 1 5.35 ? C2 GNP 200 A 1 
HETATM 30 N N2 GNP . . . C 3 2.101 6.468 2.426 1 2.32 ? N2 GNP 200 A 1 
HETATM 31 N N3 GNP . . . C 3 3.236 4.434 2.323 1 5.66 ? N3 GNP 200 A 1 
HETATM 32 C C4 GNP . . . C 3 4.389 3.824 2.712 1 5.98 ? C4 GNP 200 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#