data_3RAI # _model_server_result.job_id YoJMJrsblGpnC5sMMirfpQ _model_server_result.datetime_utc '2025-09-09 01:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":923}' # _entry.id 3RAI # _exptl.entry_id 3RAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[3-(morpholin-4-yl)propyl]amino}-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RAI _cell.length_a 53.67 _cell.length_b 71.51 _cell.length_c 72.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H26 N6 O4' _chem_comp.formula_weight 414.458 _chem_comp.id X85 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[3-(morpholin-4-yl)propyl]amino}-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 X85 sing 385 n y C1 H1 X85 sing 386 n n C2 N15 X85 sing 387 n n C3 N10 X85 sing 388 n n C3 C2 X85 doub 389 n y C4 C3 X85 sing 390 n y C4 H4 X85 sing 391 n n C5 C4 X85 doub 392 n y C5 C6 X85 sing 393 n y C6 C1 X85 doub 394 n y C7 C5 X85 sing 395 n n N8 C7 X85 sing 396 n n N8 H1N8 X85 sing 397 n n N8 H2N8 X85 sing 398 n n O9 C7 X85 doub 399 n n N10 O12 X85 sing 400 n n O11 N10 X85 doub 401 n n N13 C6 X85 sing 402 n n N13 C14 X85 sing 403 n n N13 HN13 X85 sing 404 n n C14 C28 X85 sing 405 n n C14 H114 X85 sing 406 n n C14 H214 X85 sing 407 n n N15 C16 X85 sing 408 n n N15 HN15 X85 sing 409 n n C16 C17 X85 sing 410 n n C16 H116 X85 sing 411 n n C16 H216 X85 sing 412 n n C17 C18 X85 sing 413 n n C17 H117 X85 sing 414 n n C17 H217 X85 sing 415 n n C18 N21 X85 sing 416 n n C18 H118 X85 sing 417 n n C18 H218 X85 sing 418 n n C19 H119 X85 sing 419 n n C19 H219 X85 sing 420 n n C20 C19 X85 sing 421 n n C20 H120 X85 sing 422 n n C20 H220 X85 sing 423 n n N21 C20 X85 sing 424 n n N21 C22 X85 sing 425 n n C22 C23 X85 sing 426 n n C22 H122 X85 sing 427 n n C22 H222 X85 sing 428 n n C23 H123 X85 sing 429 n n C23 H223 X85 sing 430 n n O24 C19 X85 sing 431 n n O24 C23 X85 sing 432 n n C25 C30 X85 sing 433 n y C25 H25 X85 sing 434 n n N26 C25 X85 doub 435 n y C27 C28 X85 doub 436 n y C27 N26 X85 sing 437 n y C27 H27 X85 sing 438 n n C28 C29 X85 sing 439 n y C29 C30 X85 doub 440 n y C29 H29 X85 sing 441 n n C30 H30 X85 sing 442 n n # _atom_sites.entry_id 3RAI _atom_sites.fract_transf_matrix[1][1] 0.018632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 922 1 EDO EDO . C 3 X85 A 1 923 1 X85 X85 . D 4 HOH A 1 299 2 HOH HOH . D 4 HOH A 2 300 3 HOH HOH . D 4 HOH A 3 301 4 HOH HOH . D 4 HOH A 4 302 5 HOH HOH . D 4 HOH A 5 303 6 HOH HOH . D 4 HOH A 6 304 7 HOH HOH . D 4 HOH A 7 305 8 HOH HOH . D 4 HOH A 8 306 9 HOH HOH . D 4 HOH A 9 308 11 HOH HOH . D 4 HOH A 10 309 12 HOH HOH . D 4 HOH A 11 310 13 HOH HOH . D 4 HOH A 12 311 14 HOH HOH . D 4 HOH A 13 312 15 HOH HOH . D 4 HOH A 14 314 17 HOH HOH . D 4 HOH A 15 315 18 HOH HOH . D 4 HOH A 16 316 19 HOH HOH . D 4 HOH A 17 317 20 HOH HOH . D 4 HOH A 18 318 21 HOH HOH . D 4 HOH A 19 319 22 HOH HOH . D 4 HOH A 20 320 23 HOH HOH . D 4 HOH A 21 321 24 HOH HOH . D 4 HOH A 22 322 25 HOH HOH . D 4 HOH A 23 323 26 HOH HOH . D 4 HOH A 24 324 27 HOH HOH . D 4 HOH A 25 325 28 HOH HOH . D 4 HOH A 26 326 29 HOH HOH . D 4 HOH A 27 327 30 HOH HOH . D 4 HOH A 28 328 31 HOH HOH . D 4 HOH A 29 329 32 HOH HOH . D 4 HOH A 30 331 34 HOH HOH . D 4 HOH A 31 332 35 HOH HOH . D 4 HOH A 32 333 36 HOH HOH . D 4 HOH A 33 334 37 HOH HOH . D 4 HOH A 34 335 38 HOH HOH . D 4 HOH A 35 337 40 HOH HOH . D 4 HOH A 36 338 41 HOH HOH . D 4 HOH A 37 339 42 HOH HOH . D 4 HOH A 38 340 43 HOH HOH . D 4 HOH A 39 341 44 HOH HOH . D 4 HOH A 40 344 47 HOH HOH . D 4 HOH A 41 345 48 HOH HOH . D 4 HOH A 42 346 49 HOH HOH . D 4 HOH A 43 347 50 HOH HOH . D 4 HOH A 44 350 53 HOH HOH . D 4 HOH A 45 352 55 HOH HOH . D 4 HOH A 46 353 56 HOH HOH . D 4 HOH A 47 354 57 HOH HOH . D 4 HOH A 48 356 59 HOH HOH . D 4 HOH A 49 359 62 HOH HOH . D 4 HOH A 50 360 63 HOH HOH . D 4 HOH A 51 362 65 HOH HOH . D 4 HOH A 52 364 67 HOH HOH . D 4 HOH A 53 365 68 HOH HOH . D 4 HOH A 54 366 69 HOH HOH . D 4 HOH A 55 367 70 HOH HOH . D 4 HOH A 56 369 72 HOH HOH . D 4 HOH A 57 370 73 HOH HOH . D 4 HOH A 58 371 74 HOH HOH . D 4 HOH A 59 372 75 HOH HOH . D 4 HOH A 60 374 77 HOH HOH . D 4 HOH A 61 375 78 HOH HOH . D 4 HOH A 62 376 79 HOH HOH . D 4 HOH A 63 378 81 HOH HOH . D 4 HOH A 64 379 82 HOH HOH . D 4 HOH A 65 382 85 HOH HOH . D 4 HOH A 66 383 86 HOH HOH . D 4 HOH A 67 384 87 HOH HOH . D 4 HOH A 68 385 88 HOH HOH . D 4 HOH A 69 393 96 HOH HOH . D 4 HOH A 70 400 103 HOH HOH . D 4 HOH A 71 401 104 HOH HOH . D 4 HOH A 72 403 106 HOH HOH . D 4 HOH A 73 406 109 HOH HOH . D 4 HOH A 74 407 110 HOH HOH . D 4 HOH A 75 409 112 HOH HOH . D 4 HOH A 76 410 113 HOH HOH . D 4 HOH A 77 411 114 HOH HOH . D 4 HOH A 78 412 115 HOH HOH . D 4 HOH A 79 413 116 HOH HOH . D 4 HOH A 80 419 122 HOH HOH . D 4 HOH A 81 423 126 HOH HOH . D 4 HOH A 82 424 127 HOH HOH . D 4 HOH A 83 425 128 HOH HOH . D 4 HOH A 84 426 129 HOH HOH . D 4 HOH A 85 428 131 HOH HOH . D 4 HOH A 86 429 132 HOH HOH . D 4 HOH A 87 430 133 HOH HOH . D 4 HOH A 88 432 135 HOH HOH . D 4 HOH A 89 436 139 HOH HOH . D 4 HOH A 90 441 144 HOH HOH . D 4 HOH A 91 451 154 HOH HOH . D 4 HOH A 92 454 157 HOH HOH . D 4 HOH A 93 455 158 HOH HOH . D 4 HOH A 94 459 162 HOH HOH . D 4 HOH A 95 461 164 HOH HOH . D 4 HOH A 96 463 166 HOH HOH . D 4 HOH A 97 465 168 HOH HOH . D 4 HOH A 98 466 169 HOH HOH . D 4 HOH A 99 467 170 HOH HOH . D 4 HOH A 100 470 173 HOH HOH . D 4 HOH A 101 471 174 HOH HOH . D 4 HOH A 102 472 175 HOH HOH . D 4 HOH A 103 473 176 HOH HOH . D 4 HOH A 104 474 177 HOH HOH . D 4 HOH A 105 477 180 HOH HOH . D 4 HOH A 106 478 181 HOH HOH . D 4 HOH A 107 480 183 HOH HOH . D 4 HOH A 108 481 184 HOH HOH . D 4 HOH A 109 482 185 HOH HOH . D 4 HOH A 110 486 189 HOH HOH . D 4 HOH A 111 487 190 HOH HOH . D 4 HOH A 112 491 194 HOH HOH . D 4 HOH A 113 492 195 HOH HOH . D 4 HOH A 114 494 197 HOH HOH . D 4 HOH A 115 499 202 HOH HOH . D 4 HOH A 116 501 204 HOH HOH . D 4 HOH A 117 502 205 HOH HOH . D 4 HOH A 118 514 217 HOH HOH . D 4 HOH A 119 515 218 HOH HOH . D 4 HOH A 120 522 225 HOH HOH . D 4 HOH A 121 523 226 HOH HOH . D 4 HOH A 122 525 228 HOH HOH . D 4 HOH A 123 530 233 HOH HOH . D 4 HOH A 124 536 239 HOH HOH . D 4 HOH A 125 542 245 HOH HOH . D 4 HOH A 126 545 248 HOH HOH . D 4 HOH A 127 559 262 HOH HOH . D 4 HOH A 128 560 263 HOH HOH . D 4 HOH A 129 564 267 HOH HOH . D 4 HOH A 130 566 269 HOH HOH . D 4 HOH A 131 570 273 HOH HOH . D 4 HOH A 132 571 274 HOH HOH . D 4 HOH A 133 577 280 HOH HOH . D 4 HOH A 134 579 282 HOH HOH . D 4 HOH A 135 584 287 HOH HOH . D 4 HOH A 136 591 294 HOH HOH . D 4 HOH A 137 593 296 HOH HOH . D 4 HOH A 138 600 303 HOH HOH . D 4 HOH A 139 601 304 HOH HOH . D 4 HOH A 140 613 316 HOH HOH . D 4 HOH A 141 616 319 HOH HOH . D 4 HOH A 142 618 321 HOH HOH . D 4 HOH A 143 619 322 HOH HOH . D 4 HOH A 144 620 323 HOH HOH . D 4 HOH A 145 633 336 HOH HOH . D 4 HOH A 146 635 338 HOH HOH . D 4 HOH A 147 636 339 HOH HOH . D 4 HOH A 148 641 344 HOH HOH . D 4 HOH A 149 646 349 HOH HOH . D 4 HOH A 150 647 350 HOH HOH . D 4 HOH A 151 650 353 HOH HOH . D 4 HOH A 152 658 361 HOH HOH . D 4 HOH A 153 660 363 HOH HOH . D 4 HOH A 154 663 366 HOH HOH . D 4 HOH A 155 680 383 HOH HOH . D 4 HOH A 156 687 390 HOH HOH . D 4 HOH A 157 688 391 HOH HOH . D 4 HOH A 158 689 392 HOH HOH . D 4 HOH A 159 701 404 HOH HOH . D 4 HOH A 160 702 405 HOH HOH . D 4 HOH A 161 711 414 HOH HOH . D 4 HOH A 162 712 415 HOH HOH . D 4 HOH A 163 721 424 HOH HOH . D 4 HOH A 164 723 426 HOH HOH . D 4 HOH A 165 728 431 HOH HOH . D 4 HOH A 166 733 436 HOH HOH . D 4 HOH A 167 739 442 HOH HOH . D 4 HOH A 168 744 447 HOH HOH . D 4 HOH A 169 769 472 HOH HOH . D 4 HOH A 170 789 492 HOH HOH . D 4 HOH A 171 809 512 HOH HOH . D 4 HOH A 172 818 521 HOH HOH . D 4 HOH A 173 821 524 HOH HOH . D 4 HOH A 174 827 530 HOH HOH . D 4 HOH A 175 838 541 HOH HOH . D 4 HOH A 176 843 546 HOH HOH . D 4 HOH A 177 849 552 HOH HOH . D 4 HOH A 178 851 554 HOH HOH . D 4 HOH A 179 857 560 HOH HOH . D 4 HOH A 180 865 568 HOH HOH . D 4 HOH A 181 883 586 HOH HOH . D 4 HOH A 182 886 589 HOH HOH . D 4 HOH A 183 891 594 HOH HOH . D 4 HOH A 184 892 595 HOH HOH . D 4 HOH A 185 893 596 HOH HOH . D 4 HOH A 186 894 597 HOH HOH . D 4 HOH A 187 897 600 HOH HOH . D 4 HOH A 188 898 601 HOH HOH . D 4 HOH A 189 899 602 HOH HOH . D 4 HOH A 190 901 604 HOH HOH . D 4 HOH A 191 902 605 HOH HOH . D 4 HOH A 192 903 606 HOH HOH . D 4 HOH A 193 904 607 HOH HOH . D 4 HOH A 194 906 609 HOH HOH . D 4 HOH A 195 908 611 HOH HOH . D 4 HOH A 196 909 612 HOH HOH . D 4 HOH A 197 910 613 HOH HOH . D 4 HOH A 198 911 614 HOH HOH . D 4 HOH A 199 913 616 HOH HOH . D 4 HOH A 200 914 617 HOH HOH . D 4 HOH A 201 915 618 HOH HOH . D 4 HOH A 202 916 619 HOH HOH . D 4 HOH A 203 917 620 HOH HOH . D 4 HOH A 204 918 621 HOH HOH . D 4 HOH A 205 919 622 HOH HOH . D 4 HOH A 206 920 623 HOH HOH . D 4 HOH A 207 921 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 X85 . . . C 3 -65.232 -44.636 -10.616 1 26.44 ? C1 X85 923 A 1 HETATM 2 C C2 X85 . . . C 3 -66.492 -44.154 -10.154 1 30 ? C2 X85 923 A 1 HETATM 3 C C3 X85 . . . C 3 -67.668 -44.317 -10.968 1 29.39 ? C3 X85 923 A 1 HETATM 4 C C4 X85 . . . C 3 -67.547 -44.958 -12.254 1 26.05 ? C4 X85 923 A 1 HETATM 5 C C5 X85 . . . C 3 -66.275 -45.442 -12.725 1 22.67 ? C5 X85 923 A 1 HETATM 6 C C6 X85 . . . C 3 -65.106 -45.286 -11.897 1 22.94 ? C6 X85 923 A 1 HETATM 7 C C7 X85 . . . C 3 -66.186 -46.09 -14.062 1 21.13 ? C7 X85 923 A 1 HETATM 8 N N8 X85 . . . C 3 -67.062 -45.617 -15.021 1 19.14 ? N8 X85 923 A 1 HETATM 9 O O9 X85 . . . C 3 -65.385 -46.961 -14.348 1 18.53 ? O9 X85 923 A 1 HETATM 10 N N10 X85 . . . C 3 -68.906 -43.868 -10.539 1 31.94 ? N10 X85 923 A 1 HETATM 11 O O11 X85 . . . C 3 -69.878 -44.044 -11.287 1 31.75 ? O11 X85 923 A 1 HETATM 12 O O12 X85 . . . C 3 -68.999 -43.315 -9.422 1 34.28 ? O12 X85 923 A 1 HETATM 13 N N13 X85 . . . C 3 -63.862 -45.761 -12.336 1 19.7 ? N13 X85 923 A 1 HETATM 14 C C14 X85 . . . C 3 -62.618 -45.647 -11.559 1 21.76 ? C14 X85 923 A 1 HETATM 15 N N15 X85 . . . C 3 -66.573 -43.524 -8.911 1 33.71 ? N15 X85 923 A 1 HETATM 16 C C16 X85 . . . C 3 -66.105 -44.151 -7.69 1 38.51 ? C16 X85 923 A 1 HETATM 17 C C17 X85 . . . C 3 -64.859 -43.415 -7.239 1 40.84 ? C17 X85 923 A 1 HETATM 18 C C18 X85 . . . C 3 -64.204 -44.136 -6.077 1 43.21 ? C18 X85 923 A 1 HETATM 19 C C19 X85 . . . C 3 -60.581 -43.451 -5.037 1 45.96 ? C19 X85 923 A 1 HETATM 20 C C20 X85 . . . C 3 -61.823 -44.29 -5.406 1 44.99 ? C20 X85 923 A 1 HETATM 21 N N21 X85 . . . C 3 -63.017 -43.355 -5.722 1 44.7 ? N21 X85 923 A 1 HETATM 22 C C22 X85 . . . C 3 -63.345 -42.418 -4.527 1 45.62 ? C22 X85 923 A 1 HETATM 23 C C23 X85 . . . C 3 -62.104 -41.577 -4.148 1 45.86 ? C23 X85 923 A 1 HETATM 24 O O24 X85 . . . C 3 -60.911 -41.93 -5.072 1 45.04 ? O24 X85 923 A 1 HETATM 25 C C25 X85 . . . C 3 -62.459 -48.65 -8.368 1 26.86 ? C25 X85 923 A 1 HETATM 26 N N26 X85 . . . C 3 -62.812 -49.035 -9.699 1 24.57 ? N26 X85 923 A 1 HETATM 27 C C27 X85 . . . C 3 -62.866 -48.074 -10.746 1 23.41 ? C27 X85 923 A 1 HETATM 28 C C28 X85 . . . C 3 -62.563 -46.708 -10.459 1 24.09 ? C28 X85 923 A 1 HETATM 29 C C29 X85 . . . C 3 -62.211 -46.325 -9.131 1 26.11 ? C29 X85 923 A 1 HETATM 30 C C30 X85 . . . C 3 -62.158 -47.293 -8.083 1 26.55 ? C30 X85 923 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #