data_3RAP # _model_server_result.job_id fjWX314-UJRCqyEYbrfv3A _model_server_result.datetime_utc '2024-11-29 22:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3RAP # _exptl.entry_id 3RAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.07 _cell.angle_gamma 90 _cell.entry_id 3RAP _cell.length_a 41.01 _cell.length_b 59.83 _cell.length_c 68.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 R SER 17 1_555 C MG MG . R MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc2 A OG1 THR 35 R THR 35 1_555 C MG MG . R MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc3 D O3G GTP . R GTP 180 1_555 C MG MG . R MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc4 D O2B GTP . R GTP 180 1_555 C MG MG . R MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 C MG MG . R MG 200 1_555 G O HOH . R HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 C MG MG . R MG 200 1_555 G O HOH . R HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc7 B OG SER 17 S SER 17 1_555 E MG MG . S MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 B OG1 THR 35 S THR 35 1_555 E MG MG . S MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc9 F O3G GTP . S GTP 181 1_555 E MG MG . S MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc10 F O1B GTP . S GTP 181 1_555 E MG MG . S MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc11 E MG MG . S MG 201 1_555 H O HOH . S HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc12 E MG MG . S MG 201 1_555 H O HOH . S HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RAP _atom_sites.fract_transf_matrix[1][1] 0.024384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG R 1 200 200 MG MG . D 3 GTP R 1 180 180 GTP GTP . E 2 MG S 1 201 201 MG MG . F 3 GTP S 1 181 181 GTP GTP . G 4 HOH R 1 201 1 HOH HOH . G 4 HOH R 2 202 2 HOH HOH . G 4 HOH R 3 203 5 HOH HOH . G 4 HOH R 4 204 7 HOH HOH . G 4 HOH R 5 205 8 HOH HOH . G 4 HOH R 6 206 9 HOH HOH . G 4 HOH R 7 207 10 HOH HOH . G 4 HOH R 8 208 11 HOH HOH . G 4 HOH R 9 209 12 HOH HOH . G 4 HOH R 10 210 16 HOH HOH . G 4 HOH R 11 211 20 HOH HOH . G 4 HOH R 12 212 21 HOH HOH . G 4 HOH R 13 213 25 HOH HOH . G 4 HOH R 14 214 26 HOH HOH . G 4 HOH R 15 215 27 HOH HOH . G 4 HOH R 16 216 28 HOH HOH . G 4 HOH R 17 217 29 HOH HOH . G 4 HOH R 18 218 30 HOH HOH . G 4 HOH R 19 219 32 HOH HOH . G 4 HOH R 20 220 33 HOH HOH . G 4 HOH R 21 221 34 HOH HOH . G 4 HOH R 22 222 35 HOH HOH . G 4 HOH R 23 223 36 HOH HOH . G 4 HOH R 24 224 37 HOH HOH . G 4 HOH R 25 225 38 HOH HOH . G 4 HOH R 26 226 39 HOH HOH . G 4 HOH R 27 227 40 HOH HOH . G 4 HOH R 28 228 41 HOH HOH . G 4 HOH R 29 229 42 HOH HOH . G 4 HOH R 30 230 43 HOH HOH . G 4 HOH R 31 231 44 HOH HOH . G 4 HOH R 32 232 45 HOH HOH . G 4 HOH R 33 233 46 HOH HOH . G 4 HOH R 34 234 47 HOH HOH . G 4 HOH R 35 235 48 HOH HOH . G 4 HOH R 36 236 49 HOH HOH . G 4 HOH R 37 237 62 HOH HOH . G 4 HOH R 38 238 63 HOH HOH . G 4 HOH R 39 239 64 HOH HOH . G 4 HOH R 40 240 65 HOH HOH . G 4 HOH R 41 241 66 HOH HOH . G 4 HOH R 42 242 71 HOH HOH . G 4 HOH R 43 243 72 HOH HOH . G 4 HOH R 44 244 73 HOH HOH . G 4 HOH R 45 245 74 HOH HOH . G 4 HOH R 46 246 77 HOH HOH . G 4 HOH R 47 247 79 HOH HOH . G 4 HOH R 48 248 80 HOH HOH . G 4 HOH R 49 249 81 HOH HOH . G 4 HOH R 50 250 82 HOH HOH . G 4 HOH R 51 251 83 HOH HOH . G 4 HOH R 52 252 84 HOH HOH . G 4 HOH R 53 253 91 HOH HOH . G 4 HOH R 54 254 93 HOH HOH . H 4 HOH S 1 202 3 HOH HOH . H 4 HOH S 2 203 4 HOH HOH . H 4 HOH S 3 204 6 HOH HOH . H 4 HOH S 4 205 13 HOH HOH . H 4 HOH S 5 206 14 HOH HOH . H 4 HOH S 6 207 15 HOH HOH . H 4 HOH S 7 208 17 HOH HOH . H 4 HOH S 8 209 18 HOH HOH . H 4 HOH S 9 210 19 HOH HOH . H 4 HOH S 10 211 22 HOH HOH . H 4 HOH S 11 212 23 HOH HOH . H 4 HOH S 12 213 24 HOH HOH . H 4 HOH S 13 214 31 HOH HOH . H 4 HOH S 14 215 50 HOH HOH . H 4 HOH S 15 216 51 HOH HOH . H 4 HOH S 16 217 52 HOH HOH . H 4 HOH S 17 218 53 HOH HOH . H 4 HOH S 18 219 54 HOH HOH . H 4 HOH S 19 220 55 HOH HOH . H 4 HOH S 20 221 56 HOH HOH . H 4 HOH S 21 222 57 HOH HOH . H 4 HOH S 22 223 58 HOH HOH . H 4 HOH S 23 224 59 HOH HOH . H 4 HOH S 24 225 60 HOH HOH . H 4 HOH S 25 226 61 HOH HOH . H 4 HOH S 26 227 67 HOH HOH . H 4 HOH S 27 228 68 HOH HOH . H 4 HOH S 28 229 69 HOH HOH . H 4 HOH S 29 230 70 HOH HOH . H 4 HOH S 30 231 75 HOH HOH . H 4 HOH S 31 232 76 HOH HOH . H 4 HOH S 32 233 78 HOH HOH . H 4 HOH S 33 234 85 HOH HOH . H 4 HOH S 34 235 86 HOH HOH . H 4 HOH S 35 236 87 HOH HOH . H 4 HOH S 36 237 88 HOH HOH . H 4 HOH S 37 238 89 HOH HOH . H 4 HOH S 38 239 90 HOH HOH . H 4 HOH S 39 240 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.349 _atom_site.Cartn_y -2.455 _atom_site.Cartn_z 34.735 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 200 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #