data_3RAW # _model_server_result.job_id dfujsNHAThdyKohFosOn8Q _model_server_result.datetime_utc '2024-10-16 08:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3raw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3RAW # _exptl.entry_id 3RAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.6 _cell.angle_gamma 90 _cell.entry_id 3RAW _cell.length_a 61.67 _cell.length_b 122.42 _cell.length_c 69.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H13 N3 O3' _chem_comp.formula_weight 307.303 _chem_comp.id 3RA _chem_comp.mon_nstd_flag . _chem_comp.name 5-(1,3-benzodioxol-5-ylmethyl)-2-(phenylamino)-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAA 3RA doub 1 n y CAA CAB 3RA sing 2 n y CAA HAA 3RA sing 3 n n CAC CAB 3RA doub 4 n y CAB HAB 3RA sing 5 n n CAD CAC 3RA sing 6 n y CAC HAC 3RA sing 7 n n CAE CAD 3RA doub 8 n y CAD HAD 3RA sing 9 n n CAE CAF 3RA sing 10 n y CAE HAE 3RA sing 11 n n CAF NAG 3RA sing 12 n n CAH NAG 3RA sing 13 n n NAG HNAG 3RA sing 14 n n NAI CAH 3RA sing 15 n n CAH NAL 3RA doub 16 n n CAJ NAI 3RA doub 17 n n CAN CAJ 3RA sing 18 n n CAJ CAK 3RA sing 19 n n OAM CAK 3RA doub 20 n n CAK NAL 3RA sing 21 n n CAO CAN 3RA sing 22 n n CAN HAN 3RA sing 23 n n CAN HANA 3RA sing 24 n n CAT CAO 3RA doub 25 n y CAO CAP 3RA sing 26 n y CAQ CAP 3RA doub 27 n y CAP HAP 3RA sing 28 n n CAR CAQ 3RA sing 29 n y OAU CAQ 3RA sing 30 n n OAW CAR 3RA sing 31 n n CAS CAR 3RA doub 32 n y CAS CAT 3RA sing 33 n y CAS HAS 3RA sing 34 n n CAT HAT 3RA sing 35 n n CAV OAU 3RA sing 36 n n OAW CAV 3RA sing 37 n n CAV HAV 3RA sing 38 n n CAV HAVA 3RA sing 39 n n # _atom_sites.entry_id 3RAW _atom_sites.fract_transf_matrix[1][1] 0.016215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000736 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3RA A 1 1 1 3RA 3RA . D 2 3RA B 1 2 2 3RA 3RA . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 9 9 HOH HOH . E 3 HOH A 5 10 10 HOH HOH . E 3 HOH A 6 11 11 HOH HOH . E 3 HOH A 7 15 15 HOH HOH . E 3 HOH A 8 16 16 HOH HOH . E 3 HOH A 9 17 17 HOH HOH . E 3 HOH A 10 18 18 HOH HOH . E 3 HOH A 11 21 21 HOH HOH . E 3 HOH A 12 22 22 HOH HOH . E 3 HOH A 13 24 24 HOH HOH . E 3 HOH A 14 25 25 HOH HOH . E 3 HOH A 15 26 26 HOH HOH . E 3 HOH A 16 27 27 HOH HOH . E 3 HOH A 17 31 31 HOH HOH . E 3 HOH A 18 34 34 HOH HOH . E 3 HOH A 19 35 35 HOH HOH . E 3 HOH A 20 38 38 HOH HOH . E 3 HOH A 21 40 40 HOH HOH . E 3 HOH A 22 41 41 HOH HOH . E 3 HOH A 23 46 46 HOH HOH . E 3 HOH A 24 48 48 HOH HOH . E 3 HOH A 25 51 51 HOH HOH . E 3 HOH A 26 52 52 HOH HOH . E 3 HOH A 27 53 53 HOH HOH . E 3 HOH A 28 55 55 HOH HOH . E 3 HOH A 29 57 57 HOH HOH . E 3 HOH A 30 59 59 HOH HOH . E 3 HOH A 31 61 61 HOH HOH . E 3 HOH A 32 62 62 HOH HOH . E 3 HOH A 33 67 67 HOH HOH . E 3 HOH A 34 68 68 HOH HOH . E 3 HOH A 35 70 70 HOH HOH . E 3 HOH A 36 71 71 HOH HOH . E 3 HOH A 37 73 73 HOH HOH . E 3 HOH A 38 75 75 HOH HOH . E 3 HOH A 39 76 76 HOH HOH . E 3 HOH A 40 83 83 HOH HOH . E 3 HOH A 41 86 86 HOH HOH . E 3 HOH A 42 87 87 HOH HOH . E 3 HOH A 43 89 89 HOH HOH . E 3 HOH A 44 90 90 HOH HOH . E 3 HOH A 45 92 92 HOH HOH . E 3 HOH A 46 93 93 HOH HOH . E 3 HOH A 47 96 96 HOH HOH . E 3 HOH A 48 97 97 HOH HOH . E 3 HOH A 49 99 99 HOH HOH . E 3 HOH A 50 102 102 HOH HOH . E 3 HOH A 51 103 103 HOH HOH . E 3 HOH A 52 485 1 HOH HOH . E 3 HOH A 53 486 106 HOH HOH . E 3 HOH A 54 487 108 HOH HOH . E 3 HOH A 55 488 112 HOH HOH . E 3 HOH A 56 489 113 HOH HOH . E 3 HOH A 57 490 114 HOH HOH . E 3 HOH A 58 491 116 HOH HOH . E 3 HOH A 59 492 117 HOH HOH . E 3 HOH A 60 493 121 HOH HOH . E 3 HOH A 61 494 122 HOH HOH . E 3 HOH A 62 495 127 HOH HOH . E 3 HOH A 63 496 129 HOH HOH . E 3 HOH A 64 497 131 HOH HOH . E 3 HOH A 65 498 132 HOH HOH . E 3 HOH A 66 499 134 HOH HOH . E 3 HOH A 67 500 135 HOH HOH . E 3 HOH A 68 501 137 HOH HOH . E 3 HOH A 69 502 138 HOH HOH . E 3 HOH A 70 503 139 HOH HOH . E 3 HOH A 71 504 140 HOH HOH . E 3 HOH A 72 505 141 HOH HOH . E 3 HOH A 73 506 142 HOH HOH . E 3 HOH A 74 507 144 HOH HOH . E 3 HOH A 75 508 146 HOH HOH . E 3 HOH A 76 509 147 HOH HOH . E 3 HOH A 77 510 148 HOH HOH . E 3 HOH A 78 511 150 HOH HOH . E 3 HOH A 79 512 151 HOH HOH . E 3 HOH A 80 513 153 HOH HOH . E 3 HOH A 81 514 154 HOH HOH . E 3 HOH A 82 515 156 HOH HOH . E 3 HOH A 83 516 157 HOH HOH . E 3 HOH A 84 517 158 HOH HOH . E 3 HOH A 85 518 159 HOH HOH . E 3 HOH A 86 519 162 HOH HOH . E 3 HOH A 87 520 166 HOH HOH . E 3 HOH A 88 521 167 HOH HOH . E 3 HOH A 89 522 168 HOH HOH . E 3 HOH A 90 523 170 HOH HOH . E 3 HOH A 91 524 172 HOH HOH . E 3 HOH A 92 525 174 HOH HOH . E 3 HOH A 93 526 176 HOH HOH . E 3 HOH A 94 527 177 HOH HOH . E 3 HOH A 95 528 181 HOH HOH . E 3 HOH A 96 529 182 HOH HOH . E 3 HOH A 97 530 183 HOH HOH . E 3 HOH A 98 531 184 HOH HOH . E 3 HOH A 99 532 186 HOH HOH . E 3 HOH A 100 533 190 HOH HOH . E 3 HOH A 101 534 191 HOH HOH . E 3 HOH A 102 535 193 HOH HOH . E 3 HOH A 103 536 194 HOH HOH . E 3 HOH A 104 537 195 HOH HOH . E 3 HOH A 105 538 196 HOH HOH . E 3 HOH A 106 539 201 HOH HOH . E 3 HOH A 107 540 205 HOH HOH . E 3 HOH A 108 541 211 HOH HOH . E 3 HOH A 109 542 212 HOH HOH . E 3 HOH A 110 543 213 HOH HOH . E 3 HOH A 111 544 217 HOH HOH . E 3 HOH A 112 545 219 HOH HOH . E 3 HOH A 113 546 222 HOH HOH . E 3 HOH A 114 547 223 HOH HOH . E 3 HOH A 115 548 224 HOH HOH . E 3 HOH A 116 549 225 HOH HOH . E 3 HOH A 117 550 226 HOH HOH . E 3 HOH A 118 551 228 HOH HOH . E 3 HOH A 119 552 232 HOH HOH . E 3 HOH A 120 553 233 HOH HOH . E 3 HOH A 121 554 235 HOH HOH . E 3 HOH A 122 555 238 HOH HOH . E 3 HOH A 123 556 240 HOH HOH . E 3 HOH A 124 557 242 HOH HOH . E 3 HOH A 125 558 244 HOH HOH . E 3 HOH A 126 559 245 HOH HOH . E 3 HOH A 127 560 246 HOH HOH . E 3 HOH A 128 561 171 HOH HOH . F 3 HOH B 1 4 4 HOH HOH . F 3 HOH B 2 5 5 HOH HOH . F 3 HOH B 3 7 7 HOH HOH . F 3 HOH B 4 8 8 HOH HOH . F 3 HOH B 5 12 12 HOH HOH . F 3 HOH B 6 13 13 HOH HOH . F 3 HOH B 7 14 14 HOH HOH . F 3 HOH B 8 19 19 HOH HOH . F 3 HOH B 9 20 20 HOH HOH . F 3 HOH B 10 23 23 HOH HOH . F 3 HOH B 11 28 28 HOH HOH . F 3 HOH B 12 29 29 HOH HOH . F 3 HOH B 13 30 30 HOH HOH . F 3 HOH B 14 32 32 HOH HOH . F 3 HOH B 15 33 33 HOH HOH . F 3 HOH B 16 36 36 HOH HOH . F 3 HOH B 17 37 37 HOH HOH . F 3 HOH B 18 39 39 HOH HOH . F 3 HOH B 19 42 42 HOH HOH . F 3 HOH B 20 43 43 HOH HOH . F 3 HOH B 21 44 44 HOH HOH . F 3 HOH B 22 45 45 HOH HOH . F 3 HOH B 23 47 47 HOH HOH . F 3 HOH B 24 49 49 HOH HOH . F 3 HOH B 25 50 50 HOH HOH . F 3 HOH B 26 54 54 HOH HOH . F 3 HOH B 27 58 58 HOH HOH . F 3 HOH B 28 60 60 HOH HOH . F 3 HOH B 29 63 63 HOH HOH . F 3 HOH B 30 64 64 HOH HOH . F 3 HOH B 31 65 65 HOH HOH . F 3 HOH B 32 66 66 HOH HOH . F 3 HOH B 33 69 69 HOH HOH . F 3 HOH B 34 72 72 HOH HOH . F 3 HOH B 35 74 74 HOH HOH . F 3 HOH B 36 77 77 HOH HOH . F 3 HOH B 37 78 78 HOH HOH . F 3 HOH B 38 79 79 HOH HOH . F 3 HOH B 39 80 80 HOH HOH . F 3 HOH B 40 81 81 HOH HOH . F 3 HOH B 41 82 82 HOH HOH . F 3 HOH B 42 84 84 HOH HOH . F 3 HOH B 43 85 85 HOH HOH . F 3 HOH B 44 88 88 HOH HOH . F 3 HOH B 45 91 91 HOH HOH . F 3 HOH B 46 94 94 HOH HOH . F 3 HOH B 47 95 95 HOH HOH . F 3 HOH B 48 98 98 HOH HOH . F 3 HOH B 49 100 100 HOH HOH . F 3 HOH B 50 101 101 HOH HOH . F 3 HOH B 51 485 104 HOH HOH . F 3 HOH B 52 486 105 HOH HOH . F 3 HOH B 53 487 107 HOH HOH . F 3 HOH B 54 488 109 HOH HOH . F 3 HOH B 55 489 110 HOH HOH . F 3 HOH B 56 490 111 HOH HOH . F 3 HOH B 57 491 115 HOH HOH . F 3 HOH B 58 492 118 HOH HOH . F 3 HOH B 59 493 119 HOH HOH . F 3 HOH B 60 494 120 HOH HOH . F 3 HOH B 61 495 123 HOH HOH . F 3 HOH B 62 496 124 HOH HOH . F 3 HOH B 63 497 125 HOH HOH . F 3 HOH B 64 498 126 HOH HOH . F 3 HOH B 65 499 128 HOH HOH . F 3 HOH B 66 500 130 HOH HOH . F 3 HOH B 67 501 133 HOH HOH . F 3 HOH B 68 502 136 HOH HOH . F 3 HOH B 69 503 143 HOH HOH . F 3 HOH B 70 504 145 HOH HOH . F 3 HOH B 71 505 149 HOH HOH . F 3 HOH B 72 506 152 HOH HOH . F 3 HOH B 73 507 155 HOH HOH . F 3 HOH B 74 508 160 HOH HOH . F 3 HOH B 75 509 161 HOH HOH . F 3 HOH B 76 510 163 HOH HOH . F 3 HOH B 77 511 164 HOH HOH . F 3 HOH B 78 512 165 HOH HOH . F 3 HOH B 79 513 169 HOH HOH . F 3 HOH B 80 515 173 HOH HOH . F 3 HOH B 81 516 175 HOH HOH . F 3 HOH B 82 517 178 HOH HOH . F 3 HOH B 83 518 179 HOH HOH . F 3 HOH B 84 519 180 HOH HOH . F 3 HOH B 85 520 185 HOH HOH . F 3 HOH B 86 521 187 HOH HOH . F 3 HOH B 87 522 188 HOH HOH . F 3 HOH B 88 523 189 HOH HOH . F 3 HOH B 89 524 192 HOH HOH . F 3 HOH B 90 525 197 HOH HOH . F 3 HOH B 91 526 198 HOH HOH . F 3 HOH B 92 527 199 HOH HOH . F 3 HOH B 93 528 200 HOH HOH . F 3 HOH B 94 529 202 HOH HOH . F 3 HOH B 95 530 203 HOH HOH . F 3 HOH B 96 531 204 HOH HOH . F 3 HOH B 97 532 206 HOH HOH . F 3 HOH B 98 533 207 HOH HOH . F 3 HOH B 99 534 208 HOH HOH . F 3 HOH B 100 535 209 HOH HOH . F 3 HOH B 101 536 210 HOH HOH . F 3 HOH B 102 537 214 HOH HOH . F 3 HOH B 103 538 215 HOH HOH . F 3 HOH B 104 539 216 HOH HOH . F 3 HOH B 105 540 218 HOH HOH . F 3 HOH B 106 541 220 HOH HOH . F 3 HOH B 107 542 221 HOH HOH . F 3 HOH B 108 543 227 HOH HOH . F 3 HOH B 109 544 229 HOH HOH . F 3 HOH B 110 545 230 HOH HOH . F 3 HOH B 111 546 231 HOH HOH . F 3 HOH B 112 547 234 HOH HOH . F 3 HOH B 113 548 236 HOH HOH . F 3 HOH B 114 549 237 HOH HOH . F 3 HOH B 115 550 239 HOH HOH . F 3 HOH B 116 551 241 HOH HOH . F 3 HOH B 117 552 243 HOH HOH . F 3 HOH B 118 553 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3RA . . . D 2 61.412 61.871 49.188 1 48.31 ? CAA 3RA 2 B 1 HETATM 2 C CAB 3RA . . . D 2 62.793 61.725 49.038 1 48.9 ? CAB 3RA 2 B 1 HETATM 3 C CAC 3RA . . . D 2 63.613 62.407 49.932 1 45.28 ? CAC 3RA 2 B 1 HETATM 4 C CAD 3RA . . . D 2 63.049 63.226 50.915 1 33.84 ? CAD 3RA 2 B 1 HETATM 5 C CAE 3RA . . . D 2 61.665 63.385 51.052 1 31.76 ? CAE 3RA 2 B 1 HETATM 6 C CAF 3RA . . . D 2 60.838 62.691 50.178 1 33.67 ? CAF 3RA 2 B 1 HETATM 7 N NAG 3RA . . . D 2 59.519 62.721 50.249 1 39.93 ? NAG 3RA 2 B 1 HETATM 8 C CAH 3RA . . . D 2 58.771 63.123 51.271 1 34.18 ? CAH 3RA 2 B 1 HETATM 9 N NAI 3RA . . . D 2 59.159 63.411 52.507 1 45.72 ? NAI 3RA 2 B 1 HETATM 10 C CAJ 3RA . . . D 2 58.081 63.804 53.175 1 27.18 ? CAJ 3RA 2 B 1 HETATM 11 C CAK 3RA . . . D 2 56.987 63.754 52.261 1 42.36 ? CAK 3RA 2 B 1 HETATM 12 N NAL 3RA . . . D 2 57.454 63.326 51.12 1 31.79 ? NAL 3RA 2 B 1 HETATM 13 O OAM 3RA . . . D 2 55.776 64.026 52.414 1 37.61 ? OAM 3RA 2 B 1 HETATM 14 C CAN 3RA . . . D 2 57.913 64.199 54.498 1 28.22 ? CAN 3RA 2 B 1 HETATM 15 C CAO 3RA . . . D 2 58.883 64.167 55.51 1 30.18 ? CAO 3RA 2 B 1 HETATM 16 C CAP 3RA . . . D 2 60.245 63.998 55.29 1 28.28 ? CAP 3RA 2 B 1 HETATM 17 C CAQ 3RA . . . D 2 61.151 64.008 56.333 1 29.41 ? CAQ 3RA 2 B 1 HETATM 18 C CAR 3RA . . . D 2 60.683 64.166 57.629 1 27.44 ? CAR 3RA 2 B 1 HETATM 19 C CAS 3RA . . . D 2 59.334 64.339 57.864 1 34.58 ? CAS 3RA 2 B 1 HETATM 20 C CAT 3RA . . . D 2 58.44 64.366 56.801 1 27.5 ? CAT 3RA 2 B 1 HETATM 21 O OAU 3RA . . . D 2 62.507 63.858 56.36 1 33.83 ? OAU 3RA 2 B 1 HETATM 22 C CAV 3RA . . . D 2 62.847 63.678 57.767 1 26.43 ? CAV 3RA 2 B 1 HETATM 23 O OAW 3RA . . . D 2 61.728 64.138 58.483 1 31.89 ? OAW 3RA 2 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #