data_3RB3 # _model_server_result.job_id mJpDcpLV9qMRykUueDiAwA _model_server_result.datetime_utc '2024-10-18 15:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":417}' # _entry.id 3RB3 # _exptl.entry_id 3RB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RB3 _cell.length_a 93.188 _cell.length_b 110.366 _cell.length_c 51.874 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DC 6 E DC 905 1_555 C P MG1 7 E MG1 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 C O3' MG1 7 E MG1 906 1_555 C P DC 8 E DC 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? metalc ? metalc1 A OD2 ASP 7 A ASP 7 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A OD1 ASP 7 A ASP 7 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc3 A OD1 ASP 7 A ASP 7 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A O PHE 8 A PHE 8 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 A OD2 ASP 105 A ASP 105 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A OE2 GLU 106 A GLU 106 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 A O ALA 181 A ALA 181 1_555 G CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc10 A O ILE 186 A ILE 186 1_555 G CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 I O HOH . A HOH 343 1_555 G CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc12 I O HOH . A HOH 344 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc13 D O2A DGT . A DGT 414 1_555 E CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc14 D O1G DGT . A DGT 414 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 D O2A DGT . A DGT 414 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc16 D O1B DGT . A DGT 414 1_555 F CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? hydrog WATSON-CRICK hydrog1 B N3 DT 2 D DT 803 1_555 C N1 DA 18 E DA 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 2 D DT 803 1_555 C N6 DA 18 E DA 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog3 B O4 DT 3 D DT 804 1_555 C N6 DA 17 E DA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 B N1 DG 4 D DG 805 1_555 C N3 DC 16 E DC 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 5 D DG 806 1_555 C N3 DC 15 E DC 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 5 D DG 806 1_555 C O2 DC 15 E DC 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 5 D DG 806 1_555 C N4 DC 15 E DC 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 6 D DA 807 1_555 C N3 DT 14 E DT 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 6 D DA 807 1_555 C O4 DT 14 E DT 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 7 D DT 808 1_555 C N1 DA 13 E DA 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 7 D DT 808 1_555 C N6 DA 13 E DA 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog12 B N1 DG 8 D DG 809 1_555 C O2 DC 12 E DC 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 9 D DG 810 1_555 C N3 DC 11 E DC 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 9 D DG 810 1_555 C O2 DC 11 E DC 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 9 D DG 810 1_555 C N4 DC 11 E DC 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 10 D DT 811 1_555 C N1 DA 10 E DA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 10 D DT 811 1_555 C N6 DA 10 E DA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DA 11 D DA 812 1_555 C N3 DT 9 E DT 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 DA 11 D DA 812 1_555 C O4 DT 9 E DT 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 12 D DG 813 1_555 C N3 DC 8 E DC 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 12 D DG 813 1_555 C O2 DC 8 E DC 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 12 D DG 813 1_555 C N4 DC 8 E DC 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RB3 _atom_sites.fract_transf_matrix[1][1] 0.010731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGT A 1 414 414 DGT DGT . E 5 CA A 1 415 415 CA CA . F 5 CA A 1 416 416 CA CA . G 5 CA A 1 417 417 CA CA . H 6 EPE A 1 342 342 EPE EPE . I 7 HOH A 1 343 343 HOH HOH . I 7 HOH A 2 344 344 HOH HOH . I 7 HOH A 3 345 345 HOH HOH . I 7 HOH A 4 346 346 HOH HOH . I 7 HOH A 5 347 347 HOH HOH . I 7 HOH A 6 348 348 HOH HOH . I 7 HOH A 7 349 349 HOH HOH . I 7 HOH A 8 350 350 HOH HOH . I 7 HOH A 9 351 351 HOH HOH . I 7 HOH A 10 352 352 HOH HOH . I 7 HOH A 11 353 353 HOH HOH . I 7 HOH A 12 354 354 HOH HOH . I 7 HOH A 13 355 355 HOH HOH . I 7 HOH A 14 356 356 HOH HOH . I 7 HOH A 15 357 357 HOH HOH . I 7 HOH A 16 358 358 HOH HOH . I 7 HOH A 17 359 359 HOH HOH . I 7 HOH A 18 360 360 HOH HOH . I 7 HOH A 19 361 361 HOH HOH . I 7 HOH A 20 362 362 HOH HOH . I 7 HOH A 21 363 363 HOH HOH . I 7 HOH A 22 364 364 HOH HOH . I 7 HOH A 23 365 365 HOH HOH . I 7 HOH A 24 366 366 HOH HOH . I 7 HOH A 25 367 367 HOH HOH . I 7 HOH A 26 368 368 HOH HOH . I 7 HOH A 27 369 369 HOH HOH . I 7 HOH A 28 370 370 HOH HOH . J 7 HOH D 1 1 1 HOH HOH . J 7 HOH D 2 38 38 HOH HOH . K 7 HOH E 1 4 4 HOH HOH . K 7 HOH E 2 7 7 HOH HOH . K 7 HOH E 3 17 17 HOH HOH . K 7 HOH E 4 22 22 HOH HOH . K 7 HOH E 5 25 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 10.692 _atom_site.Cartn_y 18.01 _atom_site.Cartn_z 3.526 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 417 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #