data_3RBA # _model_server_result.job_id XENqKLvZ5rTnoV8pRQw8Fw _model_server_result.datetime_utc '2024-10-11 06:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3000}' # _entry.id 3RBA # _exptl.entry_id 3RBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.554 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DEPHOSPHO COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RBA _cell.length_a 99.224 _cell.length_b 99.224 _cell.length_c 115.852 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3,4,5,6 A,B,C 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 49.612 85.930505 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -49.612 85.930505 0 4 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -49.612 28.643502 38.617333 5 'crystal symmetry operation' 11_565 x-y+2/3,-y+4/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 114.574006 38.617333 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 49.612 28.643502 38.617333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H35 N7 O13 P2 S' _chem_comp.formula_weight 687.554 _chem_comp.id COD _chem_comp.mon_nstd_flag . _chem_comp.name 'DEPHOSPHO COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 COD sing 70 n y N1 C6 COD doub 71 n y C2 N3 COD doub 72 n y C2 HC2 COD sing 73 n n N3 C4 COD sing 74 n y C4 C5 COD doub 75 n y C4 N10 COD sing 76 n y C5 C6 COD sing 77 n y C5 N8 COD sing 78 n y C6 N7 COD sing 79 n n N7 HN71 COD sing 80 n n N7 HN72 COD sing 81 n n N8 C9 COD doub 82 n y C9 N10 COD sing 83 n y C9 HC9 COD sing 84 n n N10 C11 COD sing 85 n n C11 C12 COD sing 86 n n C11 O17 COD sing 87 n n C11 HC11 COD sing 88 n n C12 O13 COD sing 89 n n C12 C14 COD sing 90 n n C12 HC12 COD sing 91 n n O13 HO13 COD sing 92 n n C14 O15 COD sing 93 n n C14 C16 COD sing 94 n n C14 HC14 COD sing 95 n n O15 HO15 COD sing 96 n n C16 O17 COD sing 97 n n C16 C18 COD sing 98 n n C16 HC16 COD sing 99 n n C18 O19 COD sing 100 n n C18 H181 COD sing 101 n n C18 H182 COD sing 102 n n O19 P20 COD sing 103 n n P20 O21 COD sing 104 n n P20 O22 COD doub 105 n n P20 O23 COD sing 106 n n O21 HO21 COD sing 107 n n O23 P24 COD sing 108 n n P24 O25 COD sing 109 n n P24 O26 COD doub 110 n n P24 O27 COD sing 111 n n O25 HO25 COD sing 112 n n O27 C28 COD sing 113 n n C28 C29 COD sing 114 n n C28 H281 COD sing 115 n n C28 H282 COD sing 116 n n C29 C30 COD sing 117 n n C29 C31 COD sing 118 n n C29 C32 COD sing 119 n n C30 H301 COD sing 120 n n C30 H302 COD sing 121 n n C30 H303 COD sing 122 n n C31 H311 COD sing 123 n n C31 H312 COD sing 124 n n C31 H313 COD sing 125 n n C32 O33 COD sing 126 n n C32 C34 COD sing 127 n n C32 HC32 COD sing 128 n n O33 HO33 COD sing 129 n n C34 O35 COD doub 130 n n C34 N36 COD sing 131 n n N36 C37 COD sing 132 n n N36 HN36 COD sing 133 n n C37 C38 COD sing 134 n n C37 H371 COD sing 135 n n C37 H372 COD sing 136 n n C38 C39 COD sing 137 n n C38 H381 COD sing 138 n n C38 H382 COD sing 139 n n C39 O40 COD doub 140 n n C39 N41 COD sing 141 n n N41 C42 COD sing 142 n n N41 HN41 COD sing 143 n n C42 C43 COD sing 144 n n C42 H421 COD sing 145 n n C42 H422 COD sing 146 n n C43 S44 COD sing 147 n n C43 H431 COD sing 148 n n C43 H432 COD sing 149 n n S44 HS44 COD sing 150 n n # _atom_sites.entry_id 3RBA _atom_sites.fract_transf_matrix[1][1] 0.010078 _atom_sites.fract_transf_matrix[1][2] 0.005819 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COD A 1 3000 3000 COD COD . C 3 HOH A 1 158 1 HOH HOH . C 3 HOH A 2 159 2 HOH HOH . C 3 HOH A 3 160 3 HOH HOH . C 3 HOH A 4 161 4 HOH HOH . C 3 HOH A 5 162 5 HOH HOH . C 3 HOH A 6 163 6 HOH HOH . C 3 HOH A 7 164 7 HOH HOH . C 3 HOH A 8 165 8 HOH HOH . C 3 HOH A 9 166 9 HOH HOH . C 3 HOH A 10 167 10 HOH HOH . C 3 HOH A 11 168 11 HOH HOH . C 3 HOH A 12 169 12 HOH HOH . C 3 HOH A 13 170 13 HOH HOH . C 3 HOH A 14 171 14 HOH HOH . C 3 HOH A 15 172 15 HOH HOH . C 3 HOH A 16 173 16 HOH HOH . C 3 HOH A 17 174 17 HOH HOH . C 3 HOH A 18 175 18 HOH HOH . C 3 HOH A 19 176 19 HOH HOH . C 3 HOH A 20 177 21 HOH HOH . C 3 HOH A 21 178 22 HOH HOH . C 3 HOH A 22 179 23 HOH HOH . C 3 HOH A 23 180 24 HOH HOH . C 3 HOH A 24 181 25 HOH HOH . C 3 HOH A 25 182 26 HOH HOH . C 3 HOH A 26 183 27 HOH HOH . C 3 HOH A 27 184 29 HOH HOH . C 3 HOH A 28 185 30 HOH HOH . C 3 HOH A 29 186 31 HOH HOH . C 3 HOH A 30 187 32 HOH HOH . C 3 HOH A 31 188 33 HOH HOH . C 3 HOH A 32 189 35 HOH HOH . C 3 HOH A 33 190 36 HOH HOH . C 3 HOH A 34 191 37 HOH HOH . C 3 HOH A 35 192 38 HOH HOH . C 3 HOH A 36 193 39 HOH HOH . C 3 HOH A 37 194 41 HOH HOH . C 3 HOH A 38 195 43 HOH HOH . C 3 HOH A 39 196 44 HOH HOH . C 3 HOH A 40 197 45 HOH HOH . C 3 HOH A 41 198 46 HOH HOH . C 3 HOH A 42 199 48 HOH HOH . C 3 HOH A 43 200 49 HOH HOH . C 3 HOH A 44 201 50 HOH HOH . C 3 HOH A 45 202 52 HOH HOH . C 3 HOH A 46 203 55 HOH HOH . C 3 HOH A 47 204 56 HOH HOH . C 3 HOH A 48 205 57 HOH HOH . C 3 HOH A 49 206 2 HOH HOH . C 3 HOH A 50 207 1 HOH HOH . C 3 HOH A 51 208 2 HOH HOH . C 3 HOH A 52 209 3 HOH HOH . C 3 HOH A 53 210 4 HOH HOH . C 3 HOH A 54 211 5 HOH HOH . C 3 HOH A 55 212 6 HOH HOH . C 3 HOH A 56 213 7 HOH HOH . C 3 HOH A 57 214 8 HOH HOH . C 3 HOH A 58 215 9 HOH HOH . C 3 HOH A 59 216 10 HOH HOH . C 3 HOH A 60 217 11 HOH HOH . C 3 HOH A 61 218 12 HOH HOH . C 3 HOH A 62 219 13 HOH HOH . C 3 HOH A 63 220 14 HOH HOH . C 3 HOH A 64 221 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 COD . . . B 2 1.597 40.529 13.19 1 33.79 ? N1 COD 3000 A 1 HETATM 2 C C2 COD . . . B 2 0.266 40.647 13.369 1 33.57 ? C2 COD 3000 A 1 HETATM 3 N N3 COD . . . B 2 -0.578 41.051 12.404 1 33.11 ? N3 COD 3000 A 1 HETATM 4 C C4 COD . . . B 2 -0.093 41.387 11.187 1 30.07 ? C4 COD 3000 A 1 HETATM 5 C C5 COD . . . B 2 1.345 41.301 10.924 1 29.77 ? C5 COD 3000 A 1 HETATM 6 C C6 COD . . . B 2 2.201 40.84 12.027 1 31.3 ? C6 COD 3000 A 1 HETATM 7 N N7 COD . . . B 2 3.54 40.738 11.852 1 30.03 ? N7 COD 3000 A 1 HETATM 8 N N8 COD . . . B 2 1.544 41.685 9.655 1 31.37 ? N8 COD 3000 A 1 HETATM 9 C C9 COD . . . B 2 0.336 41.989 9.131 1 30.49 ? C9 COD 3000 A 1 HETATM 10 N N10 COD . . . B 2 -0.625 41.819 10.059 1 29.6 ? N10 COD 3000 A 1 HETATM 11 C C11 COD . . . B 2 -2.057 42.043 9.883 1 30.01 ? C11 COD 3000 A 1 HETATM 12 C C12 COD . . . B 2 -2.311 43.461 9.431 1 36.11 ? C12 COD 3000 A 1 HETATM 13 O O13 COD . . . B 2 -2.42 44.326 10.559 1 39.22 ? O13 COD 3000 A 1 HETATM 14 C C14 COD . . . B 2 -3.641 43.32 8.739 1 35.78 ? C14 COD 3000 A 1 HETATM 15 O O15 COD . . . B 2 -4.618 43.539 9.756 1 39.04 ? O15 COD 3000 A 1 HETATM 16 C C16 COD . . . B 2 -3.679 41.863 8.281 1 32.98 ? C16 COD 3000 A 1 HETATM 17 O O17 COD . . . B 2 -2.539 41.217 8.835 1 29.58 ? O17 COD 3000 A 1 HETATM 18 C C18 COD . . . B 2 -3.589 41.679 6.777 1 37.21 ? C18 COD 3000 A 1 HETATM 19 O O19 COD . . . B 2 -2.429 42.348 6.299 1 39.07 ? O19 COD 3000 A 1 HETATM 20 P P20 COD . . . B 2 -2.517 42.873 4.795 1 41.48 ? P20 COD 3000 A 1 HETATM 21 O O21 COD . . . B 2 -1.694 44.128 4.631 1 43.19 ? O21 COD 3000 A 1 HETATM 22 O O22 COD . . . B 2 -2.311 41.633 3.954 1 37.6 ? O22 COD 3000 A 1 HETATM 23 O O23 COD . . . B 2 -4.084 43.24 4.695 1 44.08 ? O23 COD 3000 A 1 HETATM 24 P P24 COD . . . B 2 -4.649 44.686 4.253 1 44.73 ? P24 COD 3000 A 1 HETATM 25 O O25 COD . . . B 2 -4.459 45.643 5.408 1 46.92 ? O25 COD 3000 A 1 HETATM 26 O O26 COD . . . B 2 -4.09 45.007 2.89 1 45.7 ? O26 COD 3000 A 1 HETATM 27 O O27 COD . . . B 2 -6.223 44.392 4.117 1 42.72 ? O27 COD 3000 A 1 HETATM 28 C C28 COD . . . B 2 -7.177 45.441 3.964 1 43.29 ? C28 COD 3000 A 1 HETATM 29 C C29 COD . . . B 2 -8.532 44.836 3.631 1 41.93 ? C29 COD 3000 A 1 HETATM 30 C C30 COD . . . B 2 -8.379 43.922 2.426 1 42.37 ? C30 COD 3000 A 1 HETATM 31 C C31 COD . . . B 2 -9.059 44.045 4.821 1 42.91 ? C31 COD 3000 A 1 HETATM 32 C C32 COD . . . B 2 -9.492 45.973 3.283 1 41.13 ? C32 COD 3000 A 1 HETATM 33 O O33 COD . . . B 2 -8.966 46.683 2.159 1 42.38 ? O33 COD 3000 A 1 HETATM 34 C C34 COD . . . B 2 -10.862 45.472 2.931 1 41.27 ? C34 COD 3000 A 1 HETATM 35 O O35 COD . . . B 2 -11.655 45.161 3.799 1 42.4 ? O35 COD 3000 A 1 HETATM 36 N N36 COD . . . B 2 -11.156 45.41 1.637 1 41.24 ? N36 COD 3000 A 1 HETATM 37 C C37 COD . . . B 2 -12.47 45.014 1.163 1 41.36 ? C37 COD 3000 A 1 HETATM 38 C C38 COD . . . B 2 -13.394 46.199 0.882 1 39.39 ? C38 COD 3000 A 1 HETATM 39 C C39 COD . . . B 2 -14.014 46.7 2.17 1 38.95 ? C39 COD 3000 A 1 HETATM 40 O O40 COD . . . B 2 -14.548 45.936 2.959 1 33.89 ? O40 COD 3000 A 1 HETATM 41 N N41 COD . . . B 2 -13.95 48.01 2.384 1 39.32 ? N41 COD 3000 A 1 HETATM 42 C C42 COD . . . B 2 -14.6 48.613 3.533 1 38.71 ? C42 COD 3000 A 1 HETATM 43 C C43 COD . . . B 2 -13.651 48.695 4.722 1 39.79 ? C43 COD 3000 A 1 HETATM 44 S S44 COD . . . B 2 -14.536 49.369 6.149 1 42.03 ? S44 COD 3000 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #