data_3RC9 # _model_server_result.job_id w9LG9GAhNX6sE3Hh_O2IgQ _model_server_result.datetime_utc '2024-10-11 23:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":335}' # _entry.id 3RC9 # _exptl.entry_id 3RC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RC9 _cell.length_a 72.975 _cell.length_b 104.464 _cell.length_c 145.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 341 A ARG 323 1_555 D NA NA . A NA 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 A O THR 342 A THR 324 1_555 D NA NA . A NA 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc3 A O ALA 344 A ALA 326 1_555 D NA NA . A NA 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc4 A OD2 ASP 346 A ASP 328 1_555 D NA NA . A NA 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RC9 _atom_sites.fract_transf_matrix[1][1] 0.013703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 333 1 NAP NAP . C 3 CL A 1 334 1 CL CL . D 4 NA A 1 335 1 NA NA . E 5 PO4 A 1 336 1 PO4 PO4 . F 6 TLO A 1 337 301 TLO TLO . G 6 TLO A 1 338 301 TLO TLO . H 7 HOH A 1 339 1 HOH HOH . H 7 HOH A 2 340 2 HOH HOH . H 7 HOH A 3 341 3 HOH HOH . H 7 HOH A 4 342 4 HOH HOH . H 7 HOH A 5 343 5 HOH HOH . H 7 HOH A 6 344 6 HOH HOH . H 7 HOH A 7 345 7 HOH HOH . H 7 HOH A 8 346 8 HOH HOH . H 7 HOH A 9 347 9 HOH HOH . H 7 HOH A 10 348 10 HOH HOH . H 7 HOH A 11 349 11 HOH HOH . H 7 HOH A 12 350 12 HOH HOH . H 7 HOH A 13 351 13 HOH HOH . H 7 HOH A 14 352 14 HOH HOH . H 7 HOH A 15 353 15 HOH HOH . H 7 HOH A 16 354 16 HOH HOH . H 7 HOH A 17 355 17 HOH HOH . H 7 HOH A 18 356 18 HOH HOH . H 7 HOH A 19 357 19 HOH HOH . H 7 HOH A 20 358 20 HOH HOH . H 7 HOH A 21 359 21 HOH HOH . H 7 HOH A 22 360 22 HOH HOH . H 7 HOH A 23 361 23 HOH HOH . H 7 HOH A 24 362 25 HOH HOH . H 7 HOH A 25 363 26 HOH HOH . H 7 HOH A 26 364 27 HOH HOH . H 7 HOH A 27 365 28 HOH HOH . H 7 HOH A 28 366 29 HOH HOH . H 7 HOH A 29 367 30 HOH HOH . H 7 HOH A 30 368 31 HOH HOH . H 7 HOH A 31 369 32 HOH HOH . H 7 HOH A 32 370 33 HOH HOH . H 7 HOH A 33 371 34 HOH HOH . H 7 HOH A 34 372 35 HOH HOH . H 7 HOH A 35 373 36 HOH HOH . H 7 HOH A 36 374 37 HOH HOH . H 7 HOH A 37 375 38 HOH HOH . H 7 HOH A 38 376 39 HOH HOH . H 7 HOH A 39 377 40 HOH HOH . H 7 HOH A 40 378 41 HOH HOH . H 7 HOH A 41 379 42 HOH HOH . H 7 HOH A 42 380 43 HOH HOH . H 7 HOH A 43 381 44 HOH HOH . H 7 HOH A 44 382 45 HOH HOH . H 7 HOH A 45 383 46 HOH HOH . H 7 HOH A 46 384 47 HOH HOH . H 7 HOH A 47 385 48 HOH HOH . H 7 HOH A 48 386 49 HOH HOH . H 7 HOH A 49 387 50 HOH HOH . H 7 HOH A 50 388 51 HOH HOH . H 7 HOH A 51 389 52 HOH HOH . H 7 HOH A 52 390 53 HOH HOH . H 7 HOH A 53 391 54 HOH HOH . H 7 HOH A 54 392 55 HOH HOH . H 7 HOH A 55 393 56 HOH HOH . H 7 HOH A 56 394 57 HOH HOH . H 7 HOH A 57 395 58 HOH HOH . H 7 HOH A 58 396 59 HOH HOH . H 7 HOH A 59 397 60 HOH HOH . H 7 HOH A 60 398 61 HOH HOH . H 7 HOH A 61 399 62 HOH HOH . H 7 HOH A 62 400 63 HOH HOH . H 7 HOH A 63 401 64 HOH HOH . H 7 HOH A 64 402 65 HOH HOH . H 7 HOH A 65 403 66 HOH HOH . H 7 HOH A 66 404 67 HOH HOH . H 7 HOH A 67 405 69 HOH HOH . H 7 HOH A 68 406 71 HOH HOH . H 7 HOH A 69 407 72 HOH HOH . H 7 HOH A 70 408 73 HOH HOH . H 7 HOH A 71 409 74 HOH HOH . H 7 HOH A 72 410 75 HOH HOH . H 7 HOH A 73 411 76 HOH HOH . H 7 HOH A 74 412 77 HOH HOH . H 7 HOH A 75 413 79 HOH HOH . H 7 HOH A 76 414 80 HOH HOH . H 7 HOH A 77 415 81 HOH HOH . H 7 HOH A 78 416 82 HOH HOH . H 7 HOH A 79 417 83 HOH HOH . H 7 HOH A 80 418 84 HOH HOH . H 7 HOH A 81 419 85 HOH HOH . H 7 HOH A 82 420 86 HOH HOH . H 7 HOH A 83 421 87 HOH HOH . H 7 HOH A 84 422 88 HOH HOH . H 7 HOH A 85 423 89 HOH HOH . H 7 HOH A 86 424 90 HOH HOH . H 7 HOH A 87 425 91 HOH HOH . H 7 HOH A 88 426 92 HOH HOH . H 7 HOH A 89 427 93 HOH HOH . H 7 HOH A 90 428 94 HOH HOH . H 7 HOH A 91 429 95 HOH HOH . H 7 HOH A 92 430 96 HOH HOH . H 7 HOH A 93 431 97 HOH HOH . H 7 HOH A 94 432 98 HOH HOH . H 7 HOH A 95 433 99 HOH HOH . H 7 HOH A 96 434 100 HOH HOH . H 7 HOH A 97 435 102 HOH HOH . H 7 HOH A 98 436 103 HOH HOH . H 7 HOH A 99 437 104 HOH HOH . H 7 HOH A 100 438 105 HOH HOH . H 7 HOH A 101 439 106 HOH HOH . H 7 HOH A 102 440 107 HOH HOH . H 7 HOH A 103 441 108 HOH HOH . H 7 HOH A 104 442 109 HOH HOH . H 7 HOH A 105 443 110 HOH HOH . H 7 HOH A 106 444 114 HOH HOH . H 7 HOH A 107 445 115 HOH HOH . H 7 HOH A 108 446 116 HOH HOH . H 7 HOH A 109 447 117 HOH HOH . H 7 HOH A 110 448 118 HOH HOH . H 7 HOH A 111 449 119 HOH HOH . H 7 HOH A 112 450 121 HOH HOH . H 7 HOH A 113 451 122 HOH HOH . H 7 HOH A 114 452 123 HOH HOH . H 7 HOH A 115 453 124 HOH HOH . H 7 HOH A 116 454 125 HOH HOH . H 7 HOH A 117 455 126 HOH HOH . H 7 HOH A 118 456 127 HOH HOH . H 7 HOH A 119 457 128 HOH HOH . H 7 HOH A 120 458 129 HOH HOH . H 7 HOH A 121 459 130 HOH HOH . H 7 HOH A 122 460 131 HOH HOH . H 7 HOH A 123 461 132 HOH HOH . H 7 HOH A 124 462 133 HOH HOH . H 7 HOH A 125 463 134 HOH HOH . H 7 HOH A 126 464 136 HOH HOH . H 7 HOH A 127 465 138 HOH HOH . H 7 HOH A 128 466 139 HOH HOH . H 7 HOH A 129 467 140 HOH HOH . H 7 HOH A 130 468 141 HOH HOH . H 7 HOH A 131 469 142 HOH HOH . H 7 HOH A 132 470 143 HOH HOH . H 7 HOH A 133 471 144 HOH HOH . H 7 HOH A 134 472 146 HOH HOH . H 7 HOH A 135 473 147 HOH HOH . H 7 HOH A 136 474 149 HOH HOH . H 7 HOH A 137 475 150 HOH HOH . H 7 HOH A 138 476 151 HOH HOH . H 7 HOH A 139 477 152 HOH HOH . H 7 HOH A 140 478 153 HOH HOH . H 7 HOH A 141 479 154 HOH HOH . H 7 HOH A 142 480 155 HOH HOH . H 7 HOH A 143 481 156 HOH HOH . H 7 HOH A 144 482 157 HOH HOH . H 7 HOH A 145 483 158 HOH HOH . H 7 HOH A 146 484 159 HOH HOH . H 7 HOH A 147 485 160 HOH HOH . H 7 HOH A 148 486 161 HOH HOH . H 7 HOH A 149 487 162 HOH HOH . H 7 HOH A 150 488 163 HOH HOH . H 7 HOH A 151 489 164 HOH HOH . H 7 HOH A 152 490 165 HOH HOH . H 7 HOH A 153 491 166 HOH HOH . H 7 HOH A 154 492 167 HOH HOH . H 7 HOH A 155 493 168 HOH HOH . H 7 HOH A 156 494 170 HOH HOH . H 7 HOH A 157 495 171 HOH HOH . H 7 HOH A 158 496 172 HOH HOH . H 7 HOH A 159 497 173 HOH HOH . H 7 HOH A 160 498 174 HOH HOH . H 7 HOH A 161 499 175 HOH HOH . H 7 HOH A 162 500 176 HOH HOH . H 7 HOH A 163 501 177 HOH HOH . H 7 HOH A 164 502 178 HOH HOH . H 7 HOH A 165 503 179 HOH HOH . H 7 HOH A 166 504 180 HOH HOH . H 7 HOH A 167 505 181 HOH HOH . H 7 HOH A 168 506 182 HOH HOH . H 7 HOH A 169 507 183 HOH HOH . H 7 HOH A 170 508 184 HOH HOH . H 7 HOH A 171 509 185 HOH HOH . H 7 HOH A 172 510 186 HOH HOH . H 7 HOH A 173 511 187 HOH HOH . H 7 HOH A 174 512 188 HOH HOH . H 7 HOH A 175 513 189 HOH HOH . H 7 HOH A 176 514 190 HOH HOH . H 7 HOH A 177 515 191 HOH HOH . H 7 HOH A 178 516 192 HOH HOH . H 7 HOH A 179 517 193 HOH HOH . H 7 HOH A 180 518 194 HOH HOH . H 7 HOH A 181 519 195 HOH HOH . H 7 HOH A 182 520 196 HOH HOH . H 7 HOH A 183 521 197 HOH HOH . H 7 HOH A 184 522 199 HOH HOH . H 7 HOH A 185 523 200 HOH HOH . H 7 HOH A 186 524 201 HOH HOH . H 7 HOH A 187 525 202 HOH HOH . H 7 HOH A 188 526 203 HOH HOH . H 7 HOH A 189 527 204 HOH HOH . H 7 HOH A 190 528 206 HOH HOH . H 7 HOH A 191 529 207 HOH HOH . H 7 HOH A 192 530 208 HOH HOH . H 7 HOH A 193 531 209 HOH HOH . H 7 HOH A 194 532 210 HOH HOH . H 7 HOH A 195 533 211 HOH HOH . H 7 HOH A 196 534 212 HOH HOH . H 7 HOH A 197 535 213 HOH HOH . H 7 HOH A 198 536 214 HOH HOH . H 7 HOH A 199 537 215 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -42.566 _atom_site.Cartn_y -38.743 _atom_site.Cartn_z -8.613 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 335 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #