data_3RCD # _model_server_result.job_id Hfn8kVPcIujddg42lngkcg _model_server_result.datetime_utc '2024-11-17 06:38:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rcd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":9001}' # _entry.id 3RCD # _exptl.entry_id 3RCD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.957 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-3-hydroxy-3-methylbutanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.42 _cell.angle_beta 89.72 _cell.angle_gamma 90.35 _cell.entry_id 3RCD _cell.length_a 50.542 _cell.length_b 64.936 _cell.length_c 92.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,H 2 1 C,F,I 3 1 D,J 4 1 A,B,E,G,H 5 1 C,D,F,I,J 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C26 H25 Cl F3 N5 O3' _chem_comp.formula_weight 547.957 _chem_comp.id 03P _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-3-hydroxy-3-methylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TAK-285 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C 03P doub 1 n y N1 C1 03P sing 2 n y C8 N3 03P sing 3 n n N3 C7 03P sing 4 n n N3 HN3 03P sing 5 n n N2 C4 03P sing 6 n y C5 C4 03P doub 7 n y C4 H4 03P sing 8 n n C2 C5 03P sing 9 n y C5 H5 03P sing 10 n n C7 C6 03P sing 11 n n C6 N2 03P sing 12 n n C6 H6 03P sing 13 n n C6 H6A 03P sing 14 n n C7 H7 03P sing 15 n n C7 H7A 03P sing 16 n n O C8 03P doub 17 n n C9 C8 03P sing 18 n n C11 C10 03P doub 19 n y C15 C10 03P sing 20 n y C10 N4 03P sing 21 n n O1 C13 03P sing 22 n n C13 C12 03P doub 23 n y C13 C14 03P sing 24 n y C14 C15 03P doub 25 n y C15 H15 03P sing 26 n n C18 C17 03P doub 27 n y C17 C16 03P sing 28 n y C17 H17 03P sing 29 n n C19 C20 03P doub 30 n y C20 C22 03P sing 31 n n C20 C21 03P sing 32 n y C16 C21 03P doub 33 n y C21 H21 03P sing 34 n n F C22 03P sing 35 n n C22 F2 03P sing 36 n n C22 F1 03P sing 37 n n C23 C24 03P sing 38 n n C24 H24 03P sing 39 n n C24 H24A 03P sing 40 n n C24 H24B 03P sing 41 n n C18 C19 03P sing 42 n y C19 H19 03P sing 43 n n C18 H18 03P sing 44 n n C16 O1 03P sing 45 n n CL C12 03P sing 46 n n C12 C11 03P sing 47 n y C11 H11 03P sing 48 n n C14 H14 03P sing 49 n n N4 C1 03P sing 50 n n N4 HN4 03P sing 51 n n C1 C3 03P doub 52 n y C N 03P sing 53 n y C H 03P sing 54 n n C3 C2 03P sing 55 n y C3 N2 03P sing 56 n y N C2 03P doub 57 n y C23 C9 03P sing 58 n n C9 H9 03P sing 59 n n C9 H9A 03P sing 60 n n C25 C23 03P sing 61 n n C23 O2 03P sing 62 n n O2 HO2 03P sing 63 n n C25 H25 03P sing 64 n n C25 H25A 03P sing 65 n n C25 H25B 03P sing 66 n n # _atom_sites.entry_id 3RCD _atom_sites.fract_transf_matrix[1][1] 0.019786 _atom_sites.fract_transf_matrix[1][2] 0.000121 _atom_sites.fract_transf_matrix[1][3] -0.000095 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0154 _atom_sites.fract_transf_matrix[2][3] 0.000112 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 03P A 1 9001 9001 03P 03P . F 2 03P C 1 9001 9001 03P 03P . G 3 HOH A 1 2 2 HOH HOH . G 3 HOH A 2 4 4 HOH HOH . G 3 HOH A 3 23 23 HOH HOH . G 3 HOH A 4 26 26 HOH HOH . G 3 HOH A 5 27 27 HOH HOH . G 3 HOH A 6 28 28 HOH HOH . G 3 HOH A 7 29 29 HOH HOH . G 3 HOH A 8 30 30 HOH HOH . G 3 HOH A 9 31 31 HOH HOH . G 3 HOH A 10 32 32 HOH HOH . H 3 HOH B 1 6 6 HOH HOH . H 3 HOH B 2 7 7 HOH HOH . H 3 HOH B 3 8 8 HOH HOH . H 3 HOH B 4 9 9 HOH HOH . H 3 HOH B 5 19 19 HOH HOH . H 3 HOH B 6 20 20 HOH HOH . H 3 HOH B 7 21 21 HOH HOH . H 3 HOH B 8 22 22 HOH HOH . H 3 HOH B 9 34 34 HOH HOH . I 3 HOH C 1 1 1 HOH HOH . I 3 HOH C 2 3 3 HOH HOH . I 3 HOH C 3 5 5 HOH HOH . I 3 HOH C 4 17 17 HOH HOH . I 3 HOH C 5 18 18 HOH HOH . J 3 HOH D 1 10 10 HOH HOH . J 3 HOH D 2 11 11 HOH HOH . J 3 HOH D 3 12 12 HOH HOH . J 3 HOH D 4 13 13 HOH HOH . J 3 HOH D 5 14 14 HOH HOH . J 3 HOH D 6 15 15 HOH HOH . J 3 HOH D 7 16 16 HOH HOH . J 3 HOH D 8 24 24 HOH HOH . J 3 HOH D 9 25 25 HOH HOH . J 3 HOH D 10 33 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 03P . . . E 2 14.815 -0.447 28.239 1 34.05 ? N1 03P 9001 A 1 HETATM 2 N N3 03P . . . E 2 15.5 4.594 24.239 1 39.58 ? N3 03P 9001 A 1 HETATM 3 C C4 03P . . . E 2 17.926 1.092 25.359 1 35.36 ? C4 03P 9001 A 1 HETATM 4 C C5 03P . . . E 2 18.061 -0.218 25.753 1 35.32 ? C5 03P 9001 A 1 HETATM 5 C C6 03P . . . E 2 16.373 2.968 25.816 1 36.08 ? C6 03P 9001 A 1 HETATM 6 C C7 03P . . . E 2 15.784 3.2 24.447 1 37.7 ? C7 03P 9001 A 1 HETATM 7 C C8 03P . . . E 2 14.434 5.228 24.847 1 40.16 ? C8 03P 9001 A 1 HETATM 8 C C10 03P . . . E 2 13.258 1.985 28.497 1 32.72 ? C10 03P 9001 A 1 HETATM 9 C C13 03P . . . E 2 11.162 2.206 30.23 1 32.1 ? C13 03P 9001 A 1 HETATM 10 C C15 03P . . . E 2 12.019 2.374 28.023 1 32.05 ? C15 03P 9001 A 1 HETATM 11 C C17 03P . . . E 2 7.902 1.764 31.289 1 32.91 ? C17 03P 9001 A 1 HETATM 12 C C20 03P . . . E 2 8.526 -0.911 31.346 1 33.16 ? C20 03P 9001 A 1 HETATM 13 C C21 03P . . . E 2 9.544 0.013 31.227 1 32.33 ? C21 03P 9001 A 1 HETATM 14 C C22 03P . . . E 2 8.823 -2.362 31.374 1 33.55 ? C22 03P 9001 A 1 HETATM 15 C C24 03P . . . E 2 16.458 7.574 23.662 1 43.09 ? C24 03P 9001 A 1 HETATM 16 F F2 03P . . . E 2 9.776 -2.701 32.285 1 34.27 ? F2 03P 9001 A 1 HETATM 17 F F 03P . . . E 2 7.738 -3.118 31.686 1 34.57 ? F 03P 9001 A 1 HETATM 18 F F1 03P . . . E 2 9.244 -2.782 30.152 1 32.9 ? F1 03P 9001 A 1 HETATM 19 C C19 03P . . . E 2 7.212 -0.508 31.432 1 33.35 ? C19 03P 9001 A 1 HETATM 20 C C18 03P . . . E 2 6.899 0.831 31.403 1 33.56 ? C18 03P 9001 A 1 HETATM 21 C C16 03P . . . E 2 9.206 1.345 31.198 1 32.09 ? C16 03P 9001 A 1 HETATM 22 O O1 03P . . . E 2 10.127 2.34 31.103 1 31.61 ? O1 03P 9001 A 1 HETATM 23 C C12 03P . . . E 2 12.399 1.832 30.711 1 33.05 ? C12 03P 9001 A 1 HETATM 24 CL CL 03P . . . E 2 12.744 1.478 32.368 1 34.64 ? CL 03P 9001 A 1 HETATM 25 C C11 03P . . . E 2 13.445 1.722 29.834 1 33.05 ? C11 03P 9001 A 1 HETATM 26 C C14 03P . . . E 2 10.96 2.487 28.897 1 31.82 ? C14 03P 9001 A 1 HETATM 27 N N4 03P . . . E 2 14.379 1.86 27.68 1 33.21 ? N4 03P 9001 A 1 HETATM 28 C C1 03P . . . E 2 15.125 0.681 27.583 1 33.87 ? C1 03P 9001 A 1 HETATM 29 C C 03P . . . E 2 15.61 -1.507 28.055 1 34.46 ? C 03P 9001 A 1 HETATM 30 C C3 03P . . . E 2 16.237 0.648 26.772 1 34.43 ? C3 03P 9001 A 1 HETATM 31 C C2 03P . . . E 2 16.998 -0.495 26.644 1 34.8 ? C2 03P 9001 A 1 HETATM 32 N N 03P . . . E 2 16.703 -1.631 27.295 1 34.8 ? N 03P 9001 A 1 HETATM 33 N N2 03P . . . E 2 16.823 1.599 25.98 1 35 ? N2 03P 9001 A 1 HETATM 34 O O 03P . . . E 2 13.716 4.736 25.711 1 39.72 ? O 03P 9001 A 1 HETATM 35 C C9 03P . . . E 2 14.205 6.62 24.295 1 41.31 ? C9 03P 9001 A 1 HETATM 36 C C23 03P . . . E 2 15.272 7.674 24.601 1 42.48 ? C23 03P 9001 A 1 HETATM 37 O O2 03P . . . E 2 15.759 7.569 25.931 1 42.51 ? O2 03P 9001 A 1 HETATM 38 C C25 03P . . . E 2 14.649 9.045 24.456 1 43.09 ? C25 03P 9001 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #