data_3RCK # _model_server_result.job_id Mvtmsy9XxFgqyOxXeKZg6A _model_server_result.datetime_utc '2024-11-28 03:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":211}' # _entry.id 3RCK # _exptl.entry_id 3RCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperazine-1-carbaldehyde _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RCK _cell.length_a 57.328 _cell.length_b 57.328 _cell.length_c 87.397 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C5 H10 N2 O' _chem_comp.formula_weight 114.146 _chem_comp.id 1FP _chem_comp.mon_nstd_flag . _chem_comp.name piperazine-1-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAB 1FP doub 1 n n CAB NAH 1FP sing 2 n n CAC CAE 1FP sing 3 n n CAC NAG 1FP sing 4 n n CAD CAF 1FP sing 5 n n CAD NAG 1FP sing 6 n n CAE NAH 1FP sing 7 n n CAF NAH 1FP sing 8 n n CAB HAB 1FP sing 9 n n CAC HAC 1FP sing 10 n n CAC HACA 1FP sing 11 n n CAD HAD 1FP sing 12 n n CAD HADA 1FP sing 13 n n CAE HAE 1FP sing 14 n n CAE HAEA 1FP sing 15 n n CAF HAF 1FP sing 16 n n CAF HAFA 1FP sing 17 n n NAG HNAG 1FP sing 18 n n # _atom_sites.entry_id 3RCK _atom_sites.fract_transf_matrix[1][1] 0.017443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1FP X 1 208 1 1FP 1FP . C 2 1FP X 1 209 1 1FP 1FP . D 2 1FP X 1 210 1 1FP 1FP . E 2 1FP X 1 211 1 1FP 1FP . F 2 1FP X 1 212 1 1FP 1FP . G 3 HOH X 1 2 1 HOH HOH . G 3 HOH X 2 3 2 HOH HOH . G 3 HOH X 3 4 3 HOH HOH . G 3 HOH X 4 5 4 HOH HOH . G 3 HOH X 5 6 5 HOH HOH . G 3 HOH X 6 7 6 HOH HOH . G 3 HOH X 7 8 7 HOH HOH . G 3 HOH X 8 9 8 HOH HOH . G 3 HOH X 9 10 9 HOH HOH . G 3 HOH X 10 11 10 HOH HOH . G 3 HOH X 11 12 11 HOH HOH . G 3 HOH X 12 13 12 HOH HOH . G 3 HOH X 13 14 13 HOH HOH . G 3 HOH X 14 15 14 HOH HOH . G 3 HOH X 15 16 15 HOH HOH . G 3 HOH X 16 17 16 HOH HOH . G 3 HOH X 17 18 17 HOH HOH . G 3 HOH X 18 19 18 HOH HOH . G 3 HOH X 19 20 19 HOH HOH . G 3 HOH X 20 21 20 HOH HOH . G 3 HOH X 21 22 21 HOH HOH . G 3 HOH X 22 23 22 HOH HOH . G 3 HOH X 23 24 23 HOH HOH . G 3 HOH X 24 25 24 HOH HOH . G 3 HOH X 25 27 26 HOH HOH . G 3 HOH X 26 28 27 HOH HOH . G 3 HOH X 27 29 28 HOH HOH . G 3 HOH X 28 30 29 HOH HOH . G 3 HOH X 29 31 30 HOH HOH . G 3 HOH X 30 32 31 HOH HOH . G 3 HOH X 31 33 32 HOH HOH . G 3 HOH X 32 34 33 HOH HOH . G 3 HOH X 33 35 34 HOH HOH . G 3 HOH X 34 36 35 HOH HOH . G 3 HOH X 35 37 36 HOH HOH . G 3 HOH X 36 38 37 HOH HOH . G 3 HOH X 37 39 38 HOH HOH . G 3 HOH X 38 40 39 HOH HOH . G 3 HOH X 39 41 40 HOH HOH . G 3 HOH X 40 160 159 HOH HOH . G 3 HOH X 41 213 212 HOH HOH . G 3 HOH X 42 214 213 HOH HOH . G 3 HOH X 43 215 1 HOH HOH . G 3 HOH X 44 216 215 HOH HOH . G 3 HOH X 45 217 216 HOH HOH . G 3 HOH X 46 218 41 HOH HOH . G 3 HOH X 47 219 42 HOH HOH . G 3 HOH X 48 220 219 HOH HOH . G 3 HOH X 49 221 220 HOH HOH . G 3 HOH X 50 222 221 HOH HOH . G 3 HOH X 51 223 222 HOH HOH . G 3 HOH X 52 224 223 HOH HOH . G 3 HOH X 53 225 224 HOH HOH . G 3 HOH X 54 226 43 HOH HOH . G 3 HOH X 55 227 226 HOH HOH . G 3 HOH X 56 228 227 HOH HOH . G 3 HOH X 57 229 228 HOH HOH . G 3 HOH X 58 230 229 HOH HOH . G 3 HOH X 59 231 230 HOH HOH . G 3 HOH X 60 232 231 HOH HOH . G 3 HOH X 61 233 232 HOH HOH . G 3 HOH X 62 234 233 HOH HOH . G 3 HOH X 63 235 234 HOH HOH . G 3 HOH X 64 236 235 HOH HOH . G 3 HOH X 65 237 236 HOH HOH . G 3 HOH X 66 238 237 HOH HOH . G 3 HOH X 67 239 238 HOH HOH . G 3 HOH X 68 240 239 HOH HOH . G 3 HOH X 69 241 240 HOH HOH . G 3 HOH X 70 242 241 HOH HOH . G 3 HOH X 71 243 242 HOH HOH . G 3 HOH X 72 244 243 HOH HOH . G 3 HOH X 73 245 244 HOH HOH . G 3 HOH X 74 246 245 HOH HOH . G 3 HOH X 75 247 246 HOH HOH . G 3 HOH X 76 248 247 HOH HOH . G 3 HOH X 77 249 248 HOH HOH . G 3 HOH X 78 250 249 HOH HOH . G 3 HOH X 79 251 250 HOH HOH . G 3 HOH X 80 252 44 HOH HOH . G 3 HOH X 81 253 45 HOH HOH . G 3 HOH X 82 254 46 HOH HOH . G 3 HOH X 83 255 47 HOH HOH . G 3 HOH X 84 256 48 HOH HOH . G 3 HOH X 85 257 49 HOH HOH . G 3 HOH X 86 258 50 HOH HOH . G 3 HOH X 87 259 51 HOH HOH . G 3 HOH X 88 260 52 HOH HOH . G 3 HOH X 89 261 53 HOH HOH . G 3 HOH X 90 262 54 HOH HOH . G 3 HOH X 91 263 55 HOH HOH . G 3 HOH X 92 264 57 HOH HOH . G 3 HOH X 93 265 58 HOH HOH . G 3 HOH X 94 266 59 HOH HOH . G 3 HOH X 95 267 60 HOH HOH . G 3 HOH X 96 268 61 HOH HOH . G 3 HOH X 97 269 62 HOH HOH . G 3 HOH X 98 270 63 HOH HOH . G 3 HOH X 99 271 64 HOH HOH . G 3 HOH X 100 272 65 HOH HOH . G 3 HOH X 101 273 66 HOH HOH . G 3 HOH X 102 274 67 HOH HOH . G 3 HOH X 103 275 68 HOH HOH . G 3 HOH X 104 276 69 HOH HOH . G 3 HOH X 105 277 70 HOH HOH . G 3 HOH X 106 278 71 HOH HOH . G 3 HOH X 107 279 72 HOH HOH . G 3 HOH X 108 280 73 HOH HOH . G 3 HOH X 109 281 75 HOH HOH . G 3 HOH X 110 282 76 HOH HOH . G 3 HOH X 111 283 77 HOH HOH . G 3 HOH X 112 284 79 HOH HOH . G 3 HOH X 113 285 80 HOH HOH . G 3 HOH X 114 286 81 HOH HOH . G 3 HOH X 115 287 82 HOH HOH . G 3 HOH X 116 288 83 HOH HOH . G 3 HOH X 117 289 84 HOH HOH . G 3 HOH X 118 290 85 HOH HOH . G 3 HOH X 119 291 86 HOH HOH . G 3 HOH X 120 292 87 HOH HOH . G 3 HOH X 121 293 88 HOH HOH . G 3 HOH X 122 294 89 HOH HOH . G 3 HOH X 123 295 90 HOH HOH . G 3 HOH X 124 296 91 HOH HOH . G 3 HOH X 125 297 92 HOH HOH . G 3 HOH X 126 298 93 HOH HOH . G 3 HOH X 127 299 94 HOH HOH . G 3 HOH X 128 300 95 HOH HOH . G 3 HOH X 129 301 96 HOH HOH . G 3 HOH X 130 302 98 HOH HOH . G 3 HOH X 131 303 99 HOH HOH . G 3 HOH X 132 304 100 HOH HOH . G 3 HOH X 133 305 101 HOH HOH . G 3 HOH X 134 306 102 HOH HOH . G 3 HOH X 135 307 104 HOH HOH . G 3 HOH X 136 308 105 HOH HOH . G 3 HOH X 137 309 106 HOH HOH . G 3 HOH X 138 310 107 HOH HOH . G 3 HOH X 139 311 108 HOH HOH . G 3 HOH X 140 312 109 HOH HOH . G 3 HOH X 141 313 110 HOH HOH . G 3 HOH X 142 314 111 HOH HOH . G 3 HOH X 143 315 112 HOH HOH . G 3 HOH X 144 316 113 HOH HOH . G 3 HOH X 145 317 114 HOH HOH . G 3 HOH X 146 318 115 HOH HOH . G 3 HOH X 147 319 116 HOH HOH . G 3 HOH X 148 320 117 HOH HOH . G 3 HOH X 149 321 119 HOH HOH . G 3 HOH X 150 322 120 HOH HOH . G 3 HOH X 151 323 121 HOH HOH . G 3 HOH X 152 324 122 HOH HOH . G 3 HOH X 153 325 123 HOH HOH . G 3 HOH X 154 326 124 HOH HOH . G 3 HOH X 155 327 125 HOH HOH . G 3 HOH X 156 328 126 HOH HOH . G 3 HOH X 157 329 127 HOH HOH . G 3 HOH X 158 330 128 HOH HOH . G 3 HOH X 159 331 129 HOH HOH . G 3 HOH X 160 332 130 HOH HOH . G 3 HOH X 161 333 131 HOH HOH . G 3 HOH X 162 334 132 HOH HOH . G 3 HOH X 163 335 133 HOH HOH . G 3 HOH X 164 336 134 HOH HOH . G 3 HOH X 165 337 135 HOH HOH . G 3 HOH X 166 338 136 HOH HOH . G 3 HOH X 167 339 137 HOH HOH . G 3 HOH X 168 340 138 HOH HOH . G 3 HOH X 169 341 141 HOH HOH . G 3 HOH X 170 342 142 HOH HOH . G 3 HOH X 171 343 143 HOH HOH . G 3 HOH X 172 344 144 HOH HOH . G 3 HOH X 173 345 145 HOH HOH . G 3 HOH X 174 346 146 HOH HOH . G 3 HOH X 175 347 147 HOH HOH . G 3 HOH X 176 348 148 HOH HOH . G 3 HOH X 177 349 149 HOH HOH . G 3 HOH X 178 350 150 HOH HOH . G 3 HOH X 179 351 151 HOH HOH . G 3 HOH X 180 352 152 HOH HOH . G 3 HOH X 181 353 153 HOH HOH . G 3 HOH X 182 354 154 HOH HOH . G 3 HOH X 183 355 155 HOH HOH . G 3 HOH X 184 356 156 HOH HOH . G 3 HOH X 185 357 157 HOH HOH . G 3 HOH X 186 358 158 HOH HOH . G 3 HOH X 187 359 160 HOH HOH . G 3 HOH X 188 360 161 HOH HOH . G 3 HOH X 189 361 162 HOH HOH . G 3 HOH X 190 362 163 HOH HOH . G 3 HOH X 191 363 164 HOH HOH . G 3 HOH X 192 364 165 HOH HOH . G 3 HOH X 193 365 166 HOH HOH . G 3 HOH X 194 366 167 HOH HOH . G 3 HOH X 195 367 168 HOH HOH . G 3 HOH X 196 368 169 HOH HOH . G 3 HOH X 197 369 170 HOH HOH . G 3 HOH X 198 370 171 HOH HOH . G 3 HOH X 199 371 172 HOH HOH . G 3 HOH X 200 372 173 HOH HOH . G 3 HOH X 201 373 174 HOH HOH . G 3 HOH X 202 374 175 HOH HOH . G 3 HOH X 203 375 176 HOH HOH . G 3 HOH X 204 376 177 HOH HOH . G 3 HOH X 205 377 178 HOH HOH . G 3 HOH X 206 378 179 HOH HOH . G 3 HOH X 207 379 180 HOH HOH . G 3 HOH X 208 380 181 HOH HOH . G 3 HOH X 209 381 182 HOH HOH . G 3 HOH X 210 382 183 HOH HOH . G 3 HOH X 211 383 184 HOH HOH . G 3 HOH X 212 384 185 HOH HOH . G 3 HOH X 213 385 186 HOH HOH . G 3 HOH X 214 386 188 HOH HOH . G 3 HOH X 215 387 189 HOH HOH . G 3 HOH X 216 388 190 HOH HOH . G 3 HOH X 217 389 191 HOH HOH . G 3 HOH X 218 390 192 HOH HOH . G 3 HOH X 219 391 193 HOH HOH . G 3 HOH X 220 392 194 HOH HOH . G 3 HOH X 221 393 195 HOH HOH . G 3 HOH X 222 394 196 HOH HOH . G 3 HOH X 223 395 197 HOH HOH . G 3 HOH X 224 396 198 HOH HOH . G 3 HOH X 225 397 199 HOH HOH . G 3 HOH X 226 398 200 HOH HOH . G 3 HOH X 227 399 201 HOH HOH . G 3 HOH X 228 400 202 HOH HOH . G 3 HOH X 229 401 204 HOH HOH . G 3 HOH X 230 402 205 HOH HOH . G 3 HOH X 231 403 206 HOH HOH . G 3 HOH X 232 404 208 HOH HOH . G 3 HOH X 233 405 210 HOH HOH . G 3 HOH X 234 406 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 1FP . A . E 2 17.752 27.692 11.892 0.4 25.19 ? OAA 1FP 211 X 1 HETATM 2 O OAA 1FP . B . E 2 11.583 24.747 10.645 0.4 20.1 ? OAA 1FP 211 X 1 HETATM 3 C CAB 1FP . A . E 2 16.669 27.999 12.391 0.4 24.09 ? CAB 1FP 211 X 1 HETATM 4 C CAB 1FP . B . E 2 11.983 25.502 11.527 0.4 19.94 ? CAB 1FP 211 X 1 HETATM 5 C CAC 1FP . A . E 2 13.246 26.941 12.279 0.4 23.58 ? CAC 1FP 211 X 1 HETATM 6 C CAC 1FP . B . E 2 14.953 26.854 9.979 0.4 20.01 ? CAC 1FP 211 X 1 HETATM 7 C CAD 1FP . A . E 2 14.446 25.916 10.466 0.4 23.72 ? CAD 1FP 211 X 1 HETATM 8 C CAD 1FP . B . E 2 14.455 28.06 12.002 0.4 19.93 ? CAD 1FP 211 X 1 HETATM 9 C CAE 1FP . A . E 2 14.241 28.097 12.391 0.4 23.91 ? CAE 1FP 211 X 1 HETATM 10 C CAE 1FP . B . E 2 14.144 25.63 10.414 0.4 19.84 ? CAE 1FP 211 X 1 HETATM 11 C CAF 1FP . A . E 2 15.538 26.99 10.477 0.4 23.91 ? CAF 1FP 211 X 1 HETATM 12 C CAF 1FP . B . E 2 13.644 26.904 12.59 0.4 19.77 ? CAF 1FP 211 X 1 HETATM 13 N NAG 1FP . A . E 2 13.162 26.5 10.879 0.4 23.69 ? NAG 1FP 211 X 1 HETATM 14 N NAG 1FP . B . E 2 15.529 27.525 11.154 0.4 20.07 ? NAG 1FP 211 X 1 HETATM 15 N NAH 1FP . A . E 2 15.528 27.704 11.775 0.4 23.95 ? NAH 1FP 211 X 1 HETATM 16 N NAH 1FP . B . E 2 13.213 25.996 11.504 0.4 20.18 ? NAH 1FP 211 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #