data_3RCN # _model_server_result.job_id rE9OtELFVIqWaFqBaGIkdg _model_server_result.datetime_utc '2024-11-23 22:04:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":563}' # _entry.id 3RCN # _exptl.entry_id 3RCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RCN _cell.length_a 74.003 _cell.length_b 74.003 _cell.length_c 409.212 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 37.0015 64.088478 341.01 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C THR 143 A THR 140 1_555 A N MSE 144 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C MSE 144 A MSE 141 1_555 A N LEU 145 A LEU 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C PHE 151 A PHE 148 1_555 A N MSE 152 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 152 A MSE 149 1_555 A N PRO 153 A PRO 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C VAL 163 A VAL 160 1_555 A N MSE 164 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C MSE 164 A MSE 161 1_555 A N ALA 165 A ALA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C ALA 165 A ALA 162 1_555 A N MSE 166 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 166 A MSE 163 1_555 A N HIS 167 A HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C ARG 183 A ARG 180 1_555 A N MSE 184 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale11 A C MSE 184 A MSE 181 1_555 A N GLN 185 A GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 A C VAL 399 A VAL 396 1_555 A N MSE 400 A MSE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MSE 400 A MSE 397 1_555 A N CYS 401 A CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C ALA 508 A ALA 505 1_555 A N MSE 509 A MSE 506 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C ALA 508 A ALA 505 1_555 A N MSE 509 A MSE 506 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 509 A MSE 506 1_555 A N GLY 510 A GLY 507 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 A C MSE 509 A MSE 506 1_555 A N GLY 510 A GLY 507 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3RCN _atom_sites.fract_transf_matrix[1][1] 0.013513 _atom_sites.fract_transf_matrix[1][2] 0.007802 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 551 551 SO4 SO4 . C 2 SO4 A 1 553 553 SO4 SO4 . D 2 SO4 A 1 554 554 SO4 SO4 . E 3 ACY A 1 555 555 ACY ACY . F 4 GOL A 1 556 556 GOL GOL . G 2 SO4 A 1 557 557 SO4 SO4 . H 2 SO4 A 1 558 558 SO4 SO4 . I 2 SO4 A 1 559 559 SO4 SO4 . J 4 GOL A 1 560 560 GOL GOL . K 4 GOL A 1 561 561 GOL GOL . L 4 GOL A 1 562 562 GOL GOL . M 4 GOL A 1 563 563 GOL GOL . N 4 GOL A 1 564 564 GOL GOL . O 4 GOL A 1 565 565 GOL GOL . P 5 HOH A 1 541 1 HOH HOH . P 5 HOH A 2 542 2 HOH HOH . P 5 HOH A 3 543 3 HOH HOH . P 5 HOH A 4 544 4 HOH HOH . P 5 HOH A 5 545 5 HOH HOH . P 5 HOH A 6 546 6 HOH HOH . P 5 HOH A 7 547 7 HOH HOH . P 5 HOH A 8 548 8 HOH HOH . P 5 HOH A 9 549 9 HOH HOH . P 5 HOH A 10 550 10 HOH HOH . P 5 HOH A 11 552 11 HOH HOH . P 5 HOH A 12 566 12 HOH HOH . P 5 HOH A 13 567 13 HOH HOH . P 5 HOH A 14 568 14 HOH HOH . P 5 HOH A 15 569 15 HOH HOH . P 5 HOH A 16 570 16 HOH HOH . P 5 HOH A 17 571 17 HOH HOH . P 5 HOH A 18 572 18 HOH HOH . P 5 HOH A 19 573 19 HOH HOH . P 5 HOH A 20 574 20 HOH HOH . P 5 HOH A 21 575 21 HOH HOH . P 5 HOH A 22 576 22 HOH HOH . P 5 HOH A 23 577 23 HOH HOH . P 5 HOH A 24 578 24 HOH HOH . P 5 HOH A 25 579 25 HOH HOH . P 5 HOH A 26 580 26 HOH HOH . P 5 HOH A 27 581 27 HOH HOH . P 5 HOH A 28 582 28 HOH HOH . P 5 HOH A 29 583 29 HOH HOH . P 5 HOH A 30 584 30 HOH HOH . P 5 HOH A 31 585 31 HOH HOH . P 5 HOH A 32 586 32 HOH HOH . P 5 HOH A 33 587 33 HOH HOH . P 5 HOH A 34 588 34 HOH HOH . P 5 HOH A 35 589 35 HOH HOH . P 5 HOH A 36 590 36 HOH HOH . P 5 HOH A 37 591 37 HOH HOH . P 5 HOH A 38 592 38 HOH HOH . P 5 HOH A 39 593 39 HOH HOH . P 5 HOH A 40 594 40 HOH HOH . P 5 HOH A 41 595 41 HOH HOH . P 5 HOH A 42 596 42 HOH HOH . P 5 HOH A 43 597 43 HOH HOH . P 5 HOH A 44 598 44 HOH HOH . P 5 HOH A 45 599 45 HOH HOH . P 5 HOH A 46 600 46 HOH HOH . P 5 HOH A 47 601 47 HOH HOH . P 5 HOH A 48 602 48 HOH HOH . P 5 HOH A 49 603 49 HOH HOH . P 5 HOH A 50 604 50 HOH HOH . P 5 HOH A 51 605 51 HOH HOH . P 5 HOH A 52 606 52 HOH HOH . P 5 HOH A 53 607 53 HOH HOH . P 5 HOH A 54 608 54 HOH HOH . P 5 HOH A 55 609 55 HOH HOH . P 5 HOH A 56 610 56 HOH HOH . P 5 HOH A 57 611 57 HOH HOH . P 5 HOH A 58 612 58 HOH HOH . P 5 HOH A 59 613 59 HOH HOH . P 5 HOH A 60 614 60 HOH HOH . P 5 HOH A 61 615 61 HOH HOH . P 5 HOH A 62 616 62 HOH HOH . P 5 HOH A 63 617 63 HOH HOH . P 5 HOH A 64 618 64 HOH HOH . P 5 HOH A 65 619 65 HOH HOH . P 5 HOH A 66 620 66 HOH HOH . P 5 HOH A 67 621 67 HOH HOH . P 5 HOH A 68 622 68 HOH HOH . P 5 HOH A 69 623 69 HOH HOH . P 5 HOH A 70 624 70 HOH HOH . P 5 HOH A 71 625 71 HOH HOH . P 5 HOH A 72 626 72 HOH HOH . P 5 HOH A 73 627 73 HOH HOH . P 5 HOH A 74 628 74 HOH HOH . P 5 HOH A 75 629 75 HOH HOH . P 5 HOH A 76 630 76 HOH HOH . P 5 HOH A 77 631 77 HOH HOH . P 5 HOH A 78 632 78 HOH HOH . P 5 HOH A 79 633 79 HOH HOH . P 5 HOH A 80 634 80 HOH HOH . P 5 HOH A 81 635 81 HOH HOH . P 5 HOH A 82 636 82 HOH HOH . P 5 HOH A 83 637 83 HOH HOH . P 5 HOH A 84 638 84 HOH HOH . P 5 HOH A 85 639 85 HOH HOH . P 5 HOH A 86 640 86 HOH HOH . P 5 HOH A 87 641 87 HOH HOH . P 5 HOH A 88 642 88 HOH HOH . P 5 HOH A 89 643 89 HOH HOH . P 5 HOH A 90 644 90 HOH HOH . P 5 HOH A 91 645 91 HOH HOH . P 5 HOH A 92 646 92 HOH HOH . P 5 HOH A 93 647 93 HOH HOH . P 5 HOH A 94 648 94 HOH HOH . P 5 HOH A 95 649 95 HOH HOH . P 5 HOH A 96 650 96 HOH HOH . P 5 HOH A 97 651 97 HOH HOH . P 5 HOH A 98 652 98 HOH HOH . P 5 HOH A 99 653 99 HOH HOH . P 5 HOH A 100 654 100 HOH HOH . P 5 HOH A 101 655 101 HOH HOH . P 5 HOH A 102 656 102 HOH HOH . P 5 HOH A 103 657 103 HOH HOH . P 5 HOH A 104 658 104 HOH HOH . P 5 HOH A 105 659 105 HOH HOH . P 5 HOH A 106 660 106 HOH HOH . P 5 HOH A 107 661 107 HOH HOH . P 5 HOH A 108 662 108 HOH HOH . P 5 HOH A 109 663 109 HOH HOH . P 5 HOH A 110 664 110 HOH HOH . P 5 HOH A 111 665 111 HOH HOH . P 5 HOH A 112 666 112 HOH HOH . P 5 HOH A 113 667 113 HOH HOH . P 5 HOH A 114 668 114 HOH HOH . P 5 HOH A 115 669 115 HOH HOH . P 5 HOH A 116 670 116 HOH HOH . P 5 HOH A 117 671 117 HOH HOH . P 5 HOH A 118 672 118 HOH HOH . P 5 HOH A 119 673 119 HOH HOH . P 5 HOH A 120 674 120 HOH HOH . P 5 HOH A 121 675 121 HOH HOH . P 5 HOH A 122 676 122 HOH HOH . P 5 HOH A 123 677 123 HOH HOH . P 5 HOH A 124 678 124 HOH HOH . P 5 HOH A 125 679 125 HOH HOH . P 5 HOH A 126 680 126 HOH HOH . P 5 HOH A 127 681 127 HOH HOH . P 5 HOH A 128 682 128 HOH HOH . P 5 HOH A 129 683 129 HOH HOH . P 5 HOH A 130 684 130 HOH HOH . P 5 HOH A 131 685 131 HOH HOH . P 5 HOH A 132 686 132 HOH HOH . P 5 HOH A 133 687 133 HOH HOH . P 5 HOH A 134 688 134 HOH HOH . P 5 HOH A 135 689 135 HOH HOH . P 5 HOH A 136 690 136 HOH HOH . P 5 HOH A 137 691 137 HOH HOH . P 5 HOH A 138 692 138 HOH HOH . P 5 HOH A 139 693 139 HOH HOH . P 5 HOH A 140 694 140 HOH HOH . P 5 HOH A 141 695 141 HOH HOH . P 5 HOH A 142 696 142 HOH HOH . P 5 HOH A 143 697 143 HOH HOH . P 5 HOH A 144 698 144 HOH HOH . P 5 HOH A 145 699 145 HOH HOH . P 5 HOH A 146 700 146 HOH HOH . P 5 HOH A 147 701 147 HOH HOH . P 5 HOH A 148 702 148 HOH HOH . P 5 HOH A 149 703 149 HOH HOH . P 5 HOH A 150 704 150 HOH HOH . P 5 HOH A 151 705 151 HOH HOH . P 5 HOH A 152 706 152 HOH HOH . P 5 HOH A 153 707 153 HOH HOH . P 5 HOH A 154 708 154 HOH HOH . P 5 HOH A 155 709 155 HOH HOH . P 5 HOH A 156 710 156 HOH HOH . P 5 HOH A 157 711 157 HOH HOH . P 5 HOH A 158 712 158 HOH HOH . P 5 HOH A 159 713 159 HOH HOH . P 5 HOH A 160 714 160 HOH HOH . P 5 HOH A 161 715 161 HOH HOH . P 5 HOH A 162 716 162 HOH HOH . P 5 HOH A 163 717 163 HOH HOH . P 5 HOH A 164 718 164 HOH HOH . P 5 HOH A 165 719 165 HOH HOH . P 5 HOH A 166 720 166 HOH HOH . P 5 HOH A 167 721 167 HOH HOH . P 5 HOH A 168 722 168 HOH HOH . P 5 HOH A 169 723 169 HOH HOH . P 5 HOH A 170 724 170 HOH HOH . P 5 HOH A 171 725 171 HOH HOH . P 5 HOH A 172 726 172 HOH HOH . P 5 HOH A 173 727 173 HOH HOH . P 5 HOH A 174 728 174 HOH HOH . P 5 HOH A 175 729 175 HOH HOH . P 5 HOH A 176 730 176 HOH HOH . P 5 HOH A 177 731 177 HOH HOH . P 5 HOH A 178 732 178 HOH HOH . P 5 HOH A 179 733 179 HOH HOH . P 5 HOH A 180 734 180 HOH HOH . P 5 HOH A 181 735 181 HOH HOH . P 5 HOH A 182 736 182 HOH HOH . P 5 HOH A 183 737 183 HOH HOH . P 5 HOH A 184 738 184 HOH HOH . P 5 HOH A 185 739 185 HOH HOH . P 5 HOH A 186 740 186 HOH HOH . P 5 HOH A 187 741 187 HOH HOH . P 5 HOH A 188 742 188 HOH HOH . P 5 HOH A 189 743 189 HOH HOH . P 5 HOH A 190 744 190 HOH HOH . P 5 HOH A 191 745 191 HOH HOH . P 5 HOH A 192 746 192 HOH HOH . P 5 HOH A 193 747 193 HOH HOH . P 5 HOH A 194 748 194 HOH HOH . P 5 HOH A 195 749 195 HOH HOH . P 5 HOH A 196 750 196 HOH HOH . P 5 HOH A 197 751 197 HOH HOH . P 5 HOH A 198 752 198 HOH HOH . P 5 HOH A 199 753 199 HOH HOH . P 5 HOH A 200 754 200 HOH HOH . P 5 HOH A 201 755 201 HOH HOH . P 5 HOH A 202 756 202 HOH HOH . P 5 HOH A 203 757 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 4 2.605 38.747 173.212 1 86.05 ? C1 GOL 563 A 1 HETATM 2 O O1 GOL . . . M 4 1.306 38.198 173.151 1 85.07 ? O1 GOL 563 A 1 HETATM 3 C C2 GOL . . . M 4 2.704 39.782 174.33 1 82.41 ? C2 GOL 563 A 1 HETATM 4 O O2 GOL . . . M 4 3.764 39.468 175.218 1 69.14 ? O2 GOL 563 A 1 HETATM 5 C C3 GOL . . . M 4 2.858 41.179 173.729 1 86.45 ? C3 GOL 563 A 1 HETATM 6 O O3 GOL . . . M 4 3.536 41.122 172.486 1 85.37 ? O3 GOL 563 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 653 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #