data_3RD0 # _model_server_result.job_id 7TlSNcvmAjIpvpXK1TmB2A _model_server_result.datetime_utc '2025-01-22 13:38:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":180}' # _entry.id 3RD0 # _exptl.entry_id 3RD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RD0 _cell.length_a 182.175 _cell.length_b 182.175 _cell.length_c 182.175 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 53 A GLU 53 1_555 F CD CD . A CD 179 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A OE1 GLU 53 A GLU 53 1_555 F CD CD . A CD 179 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 A OE1 GLU 56 A GLU 56 1_555 F CD CD . A CD 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 A OE2 GLU 60 A GLU 60 1_555 G CD CD . A CD 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc7 D CD CD . A CD 177 1_555 J O HOH . A HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc8 F CD CD . A CD 179 1_555 J O HOH . A HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc9 G CD CD . A CD 180 1_555 J O HOH . A HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 G CD CD . A CD 180 1_555 J O HOH . A HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RD0 _atom_sites.fract_transf_matrix[1][1] 0.005489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDP A 1 175 1 EDP EDP . C 3 CD A 1 176 1 CD CD . D 3 CD A 1 177 2 CD CD . E 3 CD A 1 178 3 CD CD . F 3 CD A 1 179 4 CD CD . G 3 CD A 1 180 5 CD CD . H 4 SO4 A 1 181 1 SO4 SO4 . I 4 SO4 A 1 182 1 SO4 SO4 . J 5 HOH A 1 183 1 HOH HOH . J 5 HOH A 2 184 2 HOH HOH . J 5 HOH A 3 185 3 HOH HOH . J 5 HOH A 4 186 4 HOH HOH . J 5 HOH A 5 187 5 HOH HOH . J 5 HOH A 6 188 6 HOH HOH . J 5 HOH A 7 189 7 HOH HOH . J 5 HOH A 8 190 8 HOH HOH . J 5 HOH A 9 191 9 HOH HOH . J 5 HOH A 10 192 10 HOH HOH . J 5 HOH A 11 193 11 HOH HOH . J 5 HOH A 12 194 12 HOH HOH . J 5 HOH A 13 195 13 HOH HOH . J 5 HOH A 14 196 14 HOH HOH . J 5 HOH A 15 197 15 HOH HOH . J 5 HOH A 16 198 16 HOH HOH . J 5 HOH A 17 199 17 HOH HOH . J 5 HOH A 18 200 18 HOH HOH . J 5 HOH A 19 201 19 HOH HOH . J 5 HOH A 20 202 20 HOH HOH . J 5 HOH A 21 203 21 HOH HOH . J 5 HOH A 22 204 22 HOH HOH . J 5 HOH A 23 205 23 HOH HOH . J 5 HOH A 24 206 24 HOH HOH . J 5 HOH A 25 207 25 HOH HOH . J 5 HOH A 26 208 26 HOH HOH . J 5 HOH A 27 209 27 HOH HOH . J 5 HOH A 28 210 28 HOH HOH . J 5 HOH A 29 211 29 HOH HOH . J 5 HOH A 30 212 30 HOH HOH . J 5 HOH A 31 213 31 HOH HOH . J 5 HOH A 32 214 32 HOH HOH . J 5 HOH A 33 215 33 HOH HOH . J 5 HOH A 34 216 34 HOH HOH . J 5 HOH A 35 217 35 HOH HOH . J 5 HOH A 36 218 36 HOH HOH . J 5 HOH A 37 219 37 HOH HOH . J 5 HOH A 38 220 38 HOH HOH . J 5 HOH A 39 221 39 HOH HOH . J 5 HOH A 40 222 40 HOH HOH . J 5 HOH A 41 223 41 HOH HOH . J 5 HOH A 42 224 42 HOH HOH . J 5 HOH A 43 225 43 HOH HOH . J 5 HOH A 44 226 44 HOH HOH . J 5 HOH A 45 227 45 HOH HOH . J 5 HOH A 46 228 46 HOH HOH . J 5 HOH A 47 229 47 HOH HOH . J 5 HOH A 48 230 48 HOH HOH . J 5 HOH A 49 231 49 HOH HOH . J 5 HOH A 50 232 50 HOH HOH . J 5 HOH A 51 233 51 HOH HOH . J 5 HOH A 52 234 52 HOH HOH . J 5 HOH A 53 235 53 HOH HOH . J 5 HOH A 54 236 54 HOH HOH . J 5 HOH A 55 237 55 HOH HOH . J 5 HOH A 56 238 56 HOH HOH . J 5 HOH A 57 239 57 HOH HOH . J 5 HOH A 58 240 58 HOH HOH . J 5 HOH A 59 241 59 HOH HOH . J 5 HOH A 60 242 60 HOH HOH . J 5 HOH A 61 243 61 HOH HOH . J 5 HOH A 62 244 62 HOH HOH . J 5 HOH A 63 245 63 HOH HOH . J 5 HOH A 64 246 64 HOH HOH . J 5 HOH A 65 247 65 HOH HOH . J 5 HOH A 66 248 66 HOH HOH . J 5 HOH A 67 249 67 HOH HOH . J 5 HOH A 68 250 68 HOH HOH . J 5 HOH A 69 251 69 HOH HOH . J 5 HOH A 70 252 70 HOH HOH . J 5 HOH A 71 253 71 HOH HOH . J 5 HOH A 72 254 72 HOH HOH . J 5 HOH A 73 255 73 HOH HOH . J 5 HOH A 74 256 74 HOH HOH . J 5 HOH A 75 257 75 HOH HOH . J 5 HOH A 76 258 76 HOH HOH . J 5 HOH A 77 259 77 HOH HOH . J 5 HOH A 78 260 78 HOH HOH . J 5 HOH A 79 261 79 HOH HOH . J 5 HOH A 80 262 80 HOH HOH . J 5 HOH A 81 263 81 HOH HOH . J 5 HOH A 82 264 82 HOH HOH . J 5 HOH A 83 265 83 HOH HOH . J 5 HOH A 84 266 84 HOH HOH . J 5 HOH A 85 267 85 HOH HOH . J 5 HOH A 86 268 86 HOH HOH . J 5 HOH A 87 269 87 HOH HOH . J 5 HOH A 88 270 88 HOH HOH . J 5 HOH A 89 271 89 HOH HOH . J 5 HOH A 90 272 90 HOH HOH . J 5 HOH A 91 273 91 HOH HOH . J 5 HOH A 92 274 92 HOH HOH . J 5 HOH A 93 275 93 HOH HOH . J 5 HOH A 94 276 94 HOH HOH . J 5 HOH A 95 277 95 HOH HOH . J 5 HOH A 96 278 96 HOH HOH . J 5 HOH A 97 279 97 HOH HOH . J 5 HOH A 98 280 98 HOH HOH . J 5 HOH A 99 281 99 HOH HOH . J 5 HOH A 100 282 100 HOH HOH . J 5 HOH A 101 283 101 HOH HOH . J 5 HOH A 102 284 102 HOH HOH . J 5 HOH A 103 285 103 HOH HOH . J 5 HOH A 104 286 104 HOH HOH . J 5 HOH A 105 287 105 HOH HOH . J 5 HOH A 106 288 106 HOH HOH . J 5 HOH A 107 289 107 HOH HOH . J 5 HOH A 108 290 108 HOH HOH . J 5 HOH A 109 291 109 HOH HOH . J 5 HOH A 110 292 110 HOH HOH . J 5 HOH A 111 293 111 HOH HOH . J 5 HOH A 112 294 112 HOH HOH . J 5 HOH A 113 295 113 HOH HOH . J 5 HOH A 114 296 114 HOH HOH . J 5 HOH A 115 297 115 HOH HOH . J 5 HOH A 116 298 116 HOH HOH . J 5 HOH A 117 299 117 HOH HOH . J 5 HOH A 118 300 118 HOH HOH . J 5 HOH A 119 301 119 HOH HOH . J 5 HOH A 120 302 120 HOH HOH . J 5 HOH A 121 303 121 HOH HOH . J 5 HOH A 122 304 122 HOH HOH . J 5 HOH A 123 305 123 HOH HOH . J 5 HOH A 124 306 124 HOH HOH . J 5 HOH A 125 307 125 HOH HOH . J 5 HOH A 126 308 126 HOH HOH . J 5 HOH A 127 309 127 HOH HOH . J 5 HOH A 128 310 128 HOH HOH . J 5 HOH A 129 311 129 HOH HOH . J 5 HOH A 130 312 130 HOH HOH . J 5 HOH A 131 313 131 HOH HOH . J 5 HOH A 132 314 132 HOH HOH . J 5 HOH A 133 315 133 HOH HOH . J 5 HOH A 134 316 134 HOH HOH . J 5 HOH A 135 317 135 HOH HOH . J 5 HOH A 136 318 136 HOH HOH . J 5 HOH A 137 319 137 HOH HOH . J 5 HOH A 138 320 138 HOH HOH . J 5 HOH A 139 321 139 HOH HOH . J 5 HOH A 140 322 140 HOH HOH . J 5 HOH A 141 323 141 HOH HOH . J 5 HOH A 142 324 142 HOH HOH . J 5 HOH A 143 325 143 HOH HOH . J 5 HOH A 144 326 144 HOH HOH . J 5 HOH A 145 327 145 HOH HOH . J 5 HOH A 146 328 146 HOH HOH . J 5 HOH A 147 329 147 HOH HOH . J 5 HOH A 148 330 148 HOH HOH . J 5 HOH A 149 331 149 HOH HOH . J 5 HOH A 150 332 150 HOH HOH . J 5 HOH A 151 333 151 HOH HOH . J 5 HOH A 152 334 152 HOH HOH . J 5 HOH A 153 335 153 HOH HOH . J 5 HOH A 154 336 154 HOH HOH . J 5 HOH A 155 337 155 HOH HOH . J 5 HOH A 156 338 156 HOH HOH . J 5 HOH A 157 339 157 HOH HOH . J 5 HOH A 158 340 158 HOH HOH . J 5 HOH A 159 341 159 HOH HOH . J 5 HOH A 160 342 160 HOH HOH . J 5 HOH A 161 343 161 HOH HOH . J 5 HOH A 162 344 162 HOH HOH . J 5 HOH A 163 345 163 HOH HOH . J 5 HOH A 164 346 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.817 _atom_site.Cartn_y 5.815 _atom_site.Cartn_z 28.592 _atom_site.occupancy 0.43 _atom_site.B_iso_or_equiv 59.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 180 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 586 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 1 #