data_3RDC # _model_server_result.job_id -JmVK-WMW2gY1GDKmzqMpw _model_server_result.datetime_utc '2024-11-13 16:29:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3RDC # _exptl.entry_id 3RDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.282 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDC _cell.length_a 56.445 _cell.length_b 56.445 _cell.length_c 86.995 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H17 N3 O3' _chem_comp.formula_weight 251.282 _chem_comp.id EA4 _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O EA4 doub 83 n n C CA EA4 sing 84 n n C OAN EA4 sing 85 n n N CA EA4 sing 86 n n N CAO EA4 sing 87 n n CAA CAI EA4 sing 88 n n NAB CAQ EA4 sing 89 n n OAC CAO EA4 doub 90 n n CAE CAG EA4 doub 91 n y CAE CAQ EA4 sing 92 n y CAF CAH EA4 sing 93 n y CAF CAQ EA4 doub 94 n y CAG CAR EA4 sing 95 n y CAH CAR EA4 doub 96 n y CAI OAN EA4 sing 97 n n CAK NAM EA4 sing 98 n n CAK CAR EA4 sing 99 n n NAM CAO EA4 sing 100 n n N HN EA4 sing 101 n n CA HA EA4 sing 102 n n CA HAA EA4 sing 103 n n CAA HAAA EA4 sing 104 n n CAA HAAB EA4 sing 105 n n CAA HAAC EA4 sing 106 n n NAB HNAB EA4 sing 107 n n NAB HNAA EA4 sing 108 n n CAE HAE EA4 sing 109 n n CAF HAF EA4 sing 110 n n CAG HAG EA4 sing 111 n n CAH HAH EA4 sing 112 n n CAI HAI EA4 sing 113 n n CAI HAIA EA4 sing 114 n n CAK HAK EA4 sing 115 n n CAK HAKA EA4 sing 116 n n NAM HNAM EA4 sing 117 n n # _atom_sites.entry_id 3RDC _atom_sites.fract_transf_matrix[1][1] 0.017716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EA4 A 1 1 1 EA4 EA4 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 10 10 HOH HOH . C 3 HOH A 9 11 11 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 13 13 HOH HOH . C 3 HOH A 12 14 14 HOH HOH . C 3 HOH A 13 17 17 HOH HOH . C 3 HOH A 14 18 18 HOH HOH . C 3 HOH A 15 19 19 HOH HOH . C 3 HOH A 16 20 20 HOH HOH . C 3 HOH A 17 22 22 HOH HOH . C 3 HOH A 18 23 23 HOH HOH . C 3 HOH A 19 24 24 HOH HOH . C 3 HOH A 20 25 25 HOH HOH . C 3 HOH A 21 27 27 HOH HOH . C 3 HOH A 22 28 28 HOH HOH . C 3 HOH A 23 29 29 HOH HOH . C 3 HOH A 24 30 30 HOH HOH . C 3 HOH A 25 31 31 HOH HOH . C 3 HOH A 26 32 32 HOH HOH . C 3 HOH A 27 33 33 HOH HOH . C 3 HOH A 28 34 34 HOH HOH . C 3 HOH A 29 36 36 HOH HOH . C 3 HOH A 30 37 37 HOH HOH . C 3 HOH A 31 38 38 HOH HOH . C 3 HOH A 32 39 39 HOH HOH . C 3 HOH A 33 40 40 HOH HOH . C 3 HOH A 34 41 41 HOH HOH . C 3 HOH A 35 208 208 HOH HOH . C 3 HOH A 36 209 1 HOH HOH . C 3 HOH A 37 210 210 HOH HOH . C 3 HOH A 38 211 42 HOH HOH . C 3 HOH A 39 212 212 HOH HOH . C 3 HOH A 40 213 43 HOH HOH . C 3 HOH A 41 214 44 HOH HOH . C 3 HOH A 42 215 215 HOH HOH . C 3 HOH A 43 216 45 HOH HOH . C 3 HOH A 44 217 47 HOH HOH . C 3 HOH A 45 218 48 HOH HOH . C 3 HOH A 46 219 49 HOH HOH . C 3 HOH A 47 220 220 HOH HOH . C 3 HOH A 48 221 221 HOH HOH . C 3 HOH A 49 222 222 HOH HOH . C 3 HOH A 50 223 223 HOH HOH . C 3 HOH A 51 224 50 HOH HOH . C 3 HOH A 52 225 225 HOH HOH . C 3 HOH A 53 226 51 HOH HOH . C 3 HOH A 54 227 227 HOH HOH . C 3 HOH A 55 228 52 HOH HOH . C 3 HOH A 56 229 53 HOH HOH . C 3 HOH A 57 230 230 HOH HOH . C 3 HOH A 58 231 55 HOH HOH . C 3 HOH A 59 232 232 HOH HOH . C 3 HOH A 60 233 233 HOH HOH . C 3 HOH A 61 234 234 HOH HOH . C 3 HOH A 62 235 56 HOH HOH . C 3 HOH A 63 236 236 HOH HOH . C 3 HOH A 64 237 237 HOH HOH . C 3 HOH A 65 238 238 HOH HOH . C 3 HOH A 66 239 239 HOH HOH . C 3 HOH A 67 240 240 HOH HOH . C 3 HOH A 68 241 241 HOH HOH . C 3 HOH A 69 242 242 HOH HOH . C 3 HOH A 70 243 243 HOH HOH . C 3 HOH A 71 244 244 HOH HOH . C 3 HOH A 72 245 245 HOH HOH . C 3 HOH A 73 246 246 HOH HOH . C 3 HOH A 74 247 247 HOH HOH . C 3 HOH A 75 248 248 HOH HOH . C 3 HOH A 76 249 249 HOH HOH . C 3 HOH A 77 250 250 HOH HOH . C 3 HOH A 78 251 251 HOH HOH . C 3 HOH A 79 252 252 HOH HOH . C 3 HOH A 80 253 253 HOH HOH . C 3 HOH A 81 254 254 HOH HOH . C 3 HOH A 82 255 255 HOH HOH . C 3 HOH A 83 256 256 HOH HOH . C 3 HOH A 84 257 257 HOH HOH . C 3 HOH A 85 258 258 HOH HOH . C 3 HOH A 86 259 259 HOH HOH . C 3 HOH A 87 260 260 HOH HOH . C 3 HOH A 88 261 261 HOH HOH . C 3 HOH A 89 262 262 HOH HOH . C 3 HOH A 90 263 57 HOH HOH . C 3 HOH A 91 264 58 HOH HOH . C 3 HOH A 92 265 59 HOH HOH . C 3 HOH A 93 266 60 HOH HOH . C 3 HOH A 94 267 61 HOH HOH . C 3 HOH A 95 268 62 HOH HOH . C 3 HOH A 96 269 63 HOH HOH . C 3 HOH A 97 270 64 HOH HOH . C 3 HOH A 98 271 65 HOH HOH . C 3 HOH A 99 272 66 HOH HOH . C 3 HOH A 100 273 67 HOH HOH . C 3 HOH A 101 274 68 HOH HOH . C 3 HOH A 102 275 70 HOH HOH . C 3 HOH A 103 276 72 HOH HOH . C 3 HOH A 104 277 73 HOH HOH . C 3 HOH A 105 278 74 HOH HOH . C 3 HOH A 106 279 75 HOH HOH . C 3 HOH A 107 280 76 HOH HOH . C 3 HOH A 108 281 77 HOH HOH . C 3 HOH A 109 282 78 HOH HOH . C 3 HOH A 110 283 79 HOH HOH . C 3 HOH A 111 284 80 HOH HOH . C 3 HOH A 112 285 81 HOH HOH . C 3 HOH A 113 286 82 HOH HOH . C 3 HOH A 114 287 83 HOH HOH . C 3 HOH A 115 288 84 HOH HOH . C 3 HOH A 116 289 85 HOH HOH . C 3 HOH A 117 290 86 HOH HOH . C 3 HOH A 118 291 87 HOH HOH . C 3 HOH A 119 292 88 HOH HOH . C 3 HOH A 120 293 89 HOH HOH . C 3 HOH A 121 294 90 HOH HOH . C 3 HOH A 122 295 91 HOH HOH . C 3 HOH A 123 296 92 HOH HOH . C 3 HOH A 124 297 93 HOH HOH . C 3 HOH A 125 298 95 HOH HOH . C 3 HOH A 126 299 96 HOH HOH . C 3 HOH A 127 300 97 HOH HOH . C 3 HOH A 128 301 98 HOH HOH . C 3 HOH A 129 302 99 HOH HOH . C 3 HOH A 130 303 101 HOH HOH . C 3 HOH A 131 304 102 HOH HOH . C 3 HOH A 132 305 103 HOH HOH . C 3 HOH A 133 306 105 HOH HOH . C 3 HOH A 134 307 106 HOH HOH . C 3 HOH A 135 308 107 HOH HOH . C 3 HOH A 136 309 108 HOH HOH . C 3 HOH A 137 310 109 HOH HOH . C 3 HOH A 138 311 110 HOH HOH . C 3 HOH A 139 312 112 HOH HOH . C 3 HOH A 140 313 113 HOH HOH . C 3 HOH A 141 314 114 HOH HOH . C 3 HOH A 142 315 115 HOH HOH . C 3 HOH A 143 316 116 HOH HOH . C 3 HOH A 144 317 117 HOH HOH . C 3 HOH A 145 318 118 HOH HOH . C 3 HOH A 146 319 119 HOH HOH . C 3 HOH A 147 320 120 HOH HOH . C 3 HOH A 148 321 121 HOH HOH . C 3 HOH A 149 322 122 HOH HOH . C 3 HOH A 150 323 123 HOH HOH . C 3 HOH A 151 324 124 HOH HOH . C 3 HOH A 152 325 125 HOH HOH . C 3 HOH A 153 326 126 HOH HOH . C 3 HOH A 154 327 127 HOH HOH . C 3 HOH A 155 328 128 HOH HOH . C 3 HOH A 156 329 129 HOH HOH . C 3 HOH A 157 330 130 HOH HOH . C 3 HOH A 158 331 131 HOH HOH . C 3 HOH A 159 332 132 HOH HOH . C 3 HOH A 160 333 133 HOH HOH . C 3 HOH A 161 334 134 HOH HOH . C 3 HOH A 162 335 136 HOH HOH . C 3 HOH A 163 336 137 HOH HOH . C 3 HOH A 164 337 139 HOH HOH . C 3 HOH A 165 338 140 HOH HOH . C 3 HOH A 166 339 141 HOH HOH . C 3 HOH A 167 340 142 HOH HOH . C 3 HOH A 168 341 143 HOH HOH . C 3 HOH A 169 342 144 HOH HOH . C 3 HOH A 170 343 145 HOH HOH . C 3 HOH A 171 344 146 HOH HOH . C 3 HOH A 172 345 147 HOH HOH . C 3 HOH A 173 346 148 HOH HOH . C 3 HOH A 174 347 149 HOH HOH . C 3 HOH A 175 348 150 HOH HOH . C 3 HOH A 176 349 151 HOH HOH . C 3 HOH A 177 350 152 HOH HOH . C 3 HOH A 178 351 153 HOH HOH . C 3 HOH A 179 352 154 HOH HOH . C 3 HOH A 180 353 155 HOH HOH . C 3 HOH A 181 354 156 HOH HOH . C 3 HOH A 182 355 157 HOH HOH . C 3 HOH A 183 356 158 HOH HOH . C 3 HOH A 184 357 159 HOH HOH . C 3 HOH A 185 358 160 HOH HOH . C 3 HOH A 186 359 162 HOH HOH . C 3 HOH A 187 360 164 HOH HOH . C 3 HOH A 188 361 165 HOH HOH . C 3 HOH A 189 362 166 HOH HOH . C 3 HOH A 190 363 167 HOH HOH . C 3 HOH A 191 364 168 HOH HOH . C 3 HOH A 192 365 169 HOH HOH . C 3 HOH A 193 366 170 HOH HOH . C 3 HOH A 194 367 171 HOH HOH . C 3 HOH A 195 368 172 HOH HOH . C 3 HOH A 196 369 173 HOH HOH . C 3 HOH A 197 370 174 HOH HOH . C 3 HOH A 198 371 175 HOH HOH . C 3 HOH A 199 372 176 HOH HOH . C 3 HOH A 200 373 177 HOH HOH . C 3 HOH A 201 374 178 HOH HOH . C 3 HOH A 202 375 179 HOH HOH . C 3 HOH A 203 376 180 HOH HOH . C 3 HOH A 204 377 181 HOH HOH . C 3 HOH A 205 378 182 HOH HOH . C 3 HOH A 206 379 183 HOH HOH . C 3 HOH A 207 380 189 HOH HOH . C 3 HOH A 208 381 191 HOH HOH . C 3 HOH A 209 382 192 HOH HOH . C 3 HOH A 210 383 193 HOH HOH . C 3 HOH A 211 384 194 HOH HOH . C 3 HOH A 212 385 195 HOH HOH . C 3 HOH A 213 386 196 HOH HOH . C 3 HOH A 214 387 197 HOH HOH . C 3 HOH A 215 388 198 HOH HOH . C 3 HOH A 216 389 199 HOH HOH . C 3 HOH A 217 390 201 HOH HOH . C 3 HOH A 218 391 202 HOH HOH . C 3 HOH A 219 392 203 HOH HOH . C 3 HOH A 220 393 204 HOH HOH . C 3 HOH A 221 394 205 HOH HOH . C 3 HOH A 222 395 206 HOH HOH . C 3 HOH A 223 396 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C EA4 . . . B 2 5.294 20.493 18.312 0.8 18.3 ? C EA4 1 A 1 HETATM 2 N N EA4 . . . B 2 3.052 19.755 17.725 0.8 18.25 ? N EA4 1 A 1 HETATM 3 O O EA4 . . . B 2 5.053 20.052 19.441 0.8 18.1 ? O EA4 1 A 1 HETATM 4 C CA EA4 . . . B 2 4.261 20.383 17.191 0.8 18.34 ? CA EA4 1 A 1 HETATM 5 C CAA EA4 . . . B 2 8.645 21.841 18.495 0.8 16.86 ? CAA EA4 1 A 1 HETATM 6 N NAB EA4 . . . B 2 0.907 14.847 23.434 0.8 16.85 ? NAB EA4 1 A 1 HETATM 7 O OAC EA4 . . . B 2 3.558 17.711 16.952 0.8 18.73 ? OAC EA4 1 A 1 HETATM 8 C CAE EA4 . . . B 2 2.029 16.026 21.749 0.8 15.97 ? CAE EA4 1 A 1 HETATM 9 C CAF EA4 . . . B 2 -0.068 14.941 21.278 0.8 16.25 ? CAF EA4 1 A 1 HETATM 10 C CAG EA4 . . . B 2 2.1 16.468 20.439 0.8 16.82 ? CAG EA4 1 A 1 HETATM 11 C CAH EA4 . . . B 2 -0.01 15.395 19.961 0.8 16.29 ? CAH EA4 1 A 1 HETATM 12 C CAI EA4 . . . B 2 7.536 20.887 18.935 0.8 17.64 ? CAI EA4 1 A 1 HETATM 13 C CAK EA4 . . . B 2 1.18 16.658 18.096 0.8 17.91 ? CAK EA4 1 A 1 HETATM 14 N NAM EA4 . . . B 2 1.648 18.046 18.126 0.8 18.18 ? NAM EA4 1 A 1 HETATM 15 O OAN EA4 . . . B 2 6.466 21.118 18.013 0.8 18.4 ? OAN EA4 1 A 1 HETATM 16 C CAO EA4 . . . B 2 2.793 18.461 17.571 0.8 18.49 ? CAO EA4 1 A 1 HETATM 17 C CAQ EA4 . . . B 2 0.951 15.26 22.171 0.8 16.45 ? CAQ EA4 1 A 1 HETATM 18 C CAR EA4 . . . B 2 1.084 16.153 19.538 0.8 16.74 ? CAR EA4 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #