data_3RDD # _model_server_result.job_id t2VrLPLhQP5wrkq8hQsUgg _model_server_result.datetime_utc '2024-11-08 05:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":166}' # _entry.id 3RDD # _exptl.entry_id 3RDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.282 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDD _cell.length_a 40.774 _cell.length_b 52.377 _cell.length_c 86.965 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H17 N3 O3' _chem_comp.formula_weight 251.282 _chem_comp.id EA4 _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O EA4 doub 83 n n C CA EA4 sing 84 n n C OAN EA4 sing 85 n n N CA EA4 sing 86 n n N CAO EA4 sing 87 n n CAA CAI EA4 sing 88 n n NAB CAQ EA4 sing 89 n n OAC CAO EA4 doub 90 n n CAE CAG EA4 doub 91 n y CAE CAQ EA4 sing 92 n y CAF CAH EA4 sing 93 n y CAF CAQ EA4 doub 94 n y CAG CAR EA4 sing 95 n y CAH CAR EA4 doub 96 n y CAI OAN EA4 sing 97 n n CAK NAM EA4 sing 98 n n CAK CAR EA4 sing 99 n n NAM CAO EA4 sing 100 n n N HN EA4 sing 101 n n CA HA EA4 sing 102 n n CA HAA EA4 sing 103 n n CAA HAAA EA4 sing 104 n n CAA HAAB EA4 sing 105 n n CAA HAAC EA4 sing 106 n n NAB HNAB EA4 sing 107 n n NAB HNAA EA4 sing 108 n n CAE HAE EA4 sing 109 n n CAF HAF EA4 sing 110 n n CAG HAG EA4 sing 111 n n CAH HAH EA4 sing 112 n n CAI HAI EA4 sing 113 n n CAI HAIA EA4 sing 114 n n CAK HAK EA4 sing 115 n n CAK HAKA EA4 sing 116 n n NAM HNAM EA4 sing 117 n n # _atom_sites.entry_id 3RDD _atom_sites.fract_transf_matrix[1][1] 0.024525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EA4 A 1 166 1 EA4 EA4 . C 3 HOH A 1 167 1 HOH HOH . C 3 HOH A 2 168 4 HOH HOH . C 3 HOH A 3 169 5 HOH HOH . C 3 HOH A 4 170 6 HOH HOH . C 3 HOH A 5 171 7 HOH HOH . C 3 HOH A 6 172 8 HOH HOH . C 3 HOH A 7 173 11 HOH HOH . C 3 HOH A 8 174 12 HOH HOH . C 3 HOH A 9 175 14 HOH HOH . C 3 HOH A 10 176 16 HOH HOH . C 3 HOH A 11 177 17 HOH HOH . C 3 HOH A 12 178 18 HOH HOH . C 3 HOH A 13 179 23 HOH HOH . C 3 HOH A 14 180 24 HOH HOH . C 3 HOH A 15 181 26 HOH HOH . C 3 HOH A 16 182 27 HOH HOH . C 3 HOH A 17 183 29 HOH HOH . C 3 HOH A 18 184 32 HOH HOH . C 3 HOH A 19 185 33 HOH HOH . C 3 HOH A 20 186 35 HOH HOH . C 3 HOH A 21 187 36 HOH HOH . C 3 HOH A 22 188 37 HOH HOH . C 3 HOH A 23 189 44 HOH HOH . C 3 HOH A 24 190 46 HOH HOH . C 3 HOH A 25 191 48 HOH HOH . C 3 HOH A 26 192 50 HOH HOH . C 3 HOH A 27 193 53 HOH HOH . C 3 HOH A 28 194 55 HOH HOH . C 3 HOH A 29 195 57 HOH HOH . C 3 HOH A 30 196 60 HOH HOH . C 3 HOH A 31 197 63 HOH HOH . C 3 HOH A 32 198 64 HOH HOH . C 3 HOH A 33 199 65 HOH HOH . C 3 HOH A 34 200 67 HOH HOH . C 3 HOH A 35 201 68 HOH HOH . C 3 HOH A 36 202 73 HOH HOH . C 3 HOH A 37 203 77 HOH HOH . C 3 HOH A 38 204 78 HOH HOH . C 3 HOH A 39 205 79 HOH HOH . C 3 HOH A 40 206 80 HOH HOH . C 3 HOH A 41 207 82 HOH HOH . C 3 HOH A 42 208 87 HOH HOH . C 3 HOH A 43 209 88 HOH HOH . C 3 HOH A 44 210 90 HOH HOH . C 3 HOH A 45 211 91 HOH HOH . C 3 HOH A 46 212 95 HOH HOH . C 3 HOH A 47 213 96 HOH HOH . C 3 HOH A 48 214 99 HOH HOH . C 3 HOH A 49 215 102 HOH HOH . C 3 HOH A 50 216 103 HOH HOH . C 3 HOH A 51 217 111 HOH HOH . C 3 HOH A 52 218 112 HOH HOH . C 3 HOH A 53 219 113 HOH HOH . C 3 HOH A 54 220 114 HOH HOH . C 3 HOH A 55 221 115 HOH HOH . C 3 HOH A 56 222 117 HOH HOH . C 3 HOH A 57 223 118 HOH HOH . C 3 HOH A 58 224 119 HOH HOH . C 3 HOH A 59 225 120 HOH HOH . C 3 HOH A 60 226 121 HOH HOH . C 3 HOH A 61 227 122 HOH HOH . C 3 HOH A 62 228 125 HOH HOH . C 3 HOH A 63 229 126 HOH HOH . C 3 HOH A 64 230 127 HOH HOH . C 3 HOH A 65 231 129 HOH HOH . C 3 HOH A 66 232 130 HOH HOH . C 3 HOH A 67 233 131 HOH HOH . C 3 HOH A 68 234 132 HOH HOH . C 3 HOH A 69 235 133 HOH HOH . C 3 HOH A 70 236 134 HOH HOH . C 3 HOH A 71 237 135 HOH HOH . C 3 HOH A 72 238 136 HOH HOH . C 3 HOH A 73 239 137 HOH HOH . C 3 HOH A 74 240 138 HOH HOH . C 3 HOH A 75 241 139 HOH HOH . C 3 HOH A 76 242 140 HOH HOH . C 3 HOH A 77 243 141 HOH HOH . C 3 HOH A 78 244 142 HOH HOH . C 3 HOH A 79 245 143 HOH HOH . C 3 HOH A 80 246 144 HOH HOH . C 3 HOH A 81 247 145 HOH HOH . C 3 HOH A 82 248 146 HOH HOH . C 3 HOH A 83 249 147 HOH HOH . C 3 HOH A 84 250 148 HOH HOH . C 3 HOH A 85 251 149 HOH HOH . C 3 HOH A 86 252 150 HOH HOH . C 3 HOH A 87 253 151 HOH HOH . C 3 HOH A 88 254 152 HOH HOH . C 3 HOH A 89 255 153 HOH HOH . C 3 HOH A 90 256 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C EA4 . . . B 2 -0.824 14.587 -4.582 1 30.54 ? C EA4 166 A 1 HETATM 2 N N EA4 . . . B 2 -0.904 16.99 -4.364 1 32.41 ? N EA4 166 A 1 HETATM 3 O O EA4 . . . B 2 -1.977 14.64 -5.005 1 29.67 ? O EA4 166 A 1 HETATM 4 C CA EA4 . . . B 2 -0.085 15.822 -4.115 1 31.18 ? CA EA4 166 A 1 HETATM 5 C CAA EA4 . . . B 2 0.031 11.111 -4.442 1 29.91 ? CAA EA4 166 A 1 HETATM 6 N NAB EA4 . . . B 2 -6.68 20.383 -8.62 1 35.01 ? NAB EA4 166 A 1 HETATM 7 O OAC EA4 . . . B 2 0.184 17.595 -6.25 1 33.8 ? OAC EA4 166 A 1 HETATM 8 C CAE EA4 . . . B 2 -4.965 18.978 -7.864 1 34.43 ? CAE EA4 166 A 1 HETATM 9 C CAF EA4 . . . B 2 -4.673 21.359 -7.906 1 34.43 ? CAF EA4 166 A 1 HETATM 10 C CAG EA4 . . . B 2 -3.69 18.824 -7.345 1 33.63 ? CAG EA4 166 A 1 HETATM 11 C CAH EA4 . . . B 2 -3.391 21.209 -7.389 1 34.78 ? CAH EA4 166 A 1 HETATM 12 C CAI EA4 . . . B 2 -0.806 12.269 -5.011 1 30.73 ? CAI EA4 166 A 1 HETATM 13 C CAK EA4 . . . B 2 -1.485 19.793 -6.557 1 35.21 ? CAK EA4 166 A 1 HETATM 14 N NAM EA4 . . . B 2 -1.526 18.829 -5.476 1 33.79 ? NAM EA4 166 A 1 HETATM 15 O OAN EA4 . . . B 2 -0.146 13.425 -4.469 1 30.18 ? OAN EA4 166 A 1 HETATM 16 C CAO EA4 . . . B 2 -0.702 17.792 -5.409 1 33.26 ? CAO EA4 166 A 1 HETATM 17 C CAQ EA4 . . . B 2 -5.458 20.244 -8.138 1 33.64 ? CAQ EA4 166 A 1 HETATM 18 C CAR EA4 . . . B 2 -2.902 19.946 -7.111 1 34.4 ? CAR EA4 166 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #