data_3RDM # _model_server_result.job_id u5tzXBiL-o3EraFMJnt7Fw _model_server_result.datetime_utc '2024-11-18 08:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3RDM # _exptl.entry_id 3RDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDM _cell.length_a 57.436 _cell.length_b 57.436 _cell.length_c 173.958 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -57.436 -57.436 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -57.436 -57.436 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 107 n n C11 O12 BTN sing 108 n n C11 C10 BTN sing 109 n n O12 HO2 BTN sing 110 n n C10 C9 BTN sing 111 n n C10 H101 BTN sing 112 n n C10 H102 BTN sing 113 n n C9 C8 BTN sing 114 n n C9 H91 BTN sing 115 n n C9 H92 BTN sing 116 n n C8 C7 BTN sing 117 n n C8 H81 BTN sing 118 n n C8 H82 BTN sing 119 n n C7 C2 BTN sing 120 n n C7 H71 BTN sing 121 n n C7 H72 BTN sing 122 n n C2 S1 BTN sing 123 n n C2 C4 BTN sing 124 n n C2 H2 BTN sing 125 n n S1 C6 BTN sing 126 n n C6 C5 BTN sing 127 n n C6 H61 BTN sing 128 n n C6 H62 BTN sing 129 n n C5 N1 BTN sing 130 n n C5 C4 BTN sing 131 n n C5 H5 BTN sing 132 n n N1 C3 BTN sing 133 n n N1 HN1 BTN sing 134 n n C3 O3 BTN doub 135 n n C3 N2 BTN sing 136 n n N2 C4 BTN sing 137 n n N2 HN2 BTN sing 138 n n C4 H4 BTN sing 139 n n # _atom_sites.entry_id 3RDM _atom_sites.fract_transf_matrix[1][1] 0.017411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 700 700 1PE P2K . C 3 BTN A 1 300 300 BTN BTN . D 4 HOH A 1 154 154 HOH HOH . D 4 HOH A 2 155 155 HOH HOH . D 4 HOH A 3 156 156 HOH HOH . D 4 HOH A 4 157 157 HOH HOH . D 4 HOH A 5 158 158 HOH HOH . D 4 HOH A 6 159 159 HOH HOH . D 4 HOH A 7 160 160 HOH HOH . D 4 HOH A 8 161 161 HOH HOH . D 4 HOH A 9 162 162 HOH HOH . D 4 HOH A 10 163 163 HOH HOH . D 4 HOH A 11 164 164 HOH HOH . D 4 HOH A 12 165 165 HOH HOH . D 4 HOH A 13 166 1 HOH HOH . D 4 HOH A 14 167 2 HOH HOH . D 4 HOH A 15 168 3 HOH HOH . D 4 HOH A 16 169 4 HOH HOH . D 4 HOH A 17 170 5 HOH HOH . D 4 HOH A 18 171 6 HOH HOH . D 4 HOH A 19 172 7 HOH HOH . D 4 HOH A 20 173 8 HOH HOH . D 4 HOH A 21 174 9 HOH HOH . D 4 HOH A 22 175 10 HOH HOH . D 4 HOH A 23 176 11 HOH HOH . D 4 HOH A 24 177 12 HOH HOH . D 4 HOH A 25 178 13 HOH HOH . D 4 HOH A 26 179 14 HOH HOH . D 4 HOH A 27 180 15 HOH HOH . D 4 HOH A 28 181 16 HOH HOH . D 4 HOH A 29 182 17 HOH HOH . D 4 HOH A 30 183 18 HOH HOH . D 4 HOH A 31 184 20 HOH HOH . D 4 HOH A 32 185 21 HOH HOH . D 4 HOH A 33 186 22 HOH HOH . D 4 HOH A 34 187 23 HOH HOH . D 4 HOH A 35 188 24 HOH HOH . D 4 HOH A 36 189 26 HOH HOH . D 4 HOH A 37 190 27 HOH HOH . D 4 HOH A 38 191 28 HOH HOH . D 4 HOH A 39 192 29 HOH HOH . D 4 HOH A 40 193 30 HOH HOH . D 4 HOH A 41 194 31 HOH HOH . D 4 HOH A 42 195 33 HOH HOH . D 4 HOH A 43 196 34 HOH HOH . D 4 HOH A 44 197 35 HOH HOH . D 4 HOH A 45 198 36 HOH HOH . D 4 HOH A 46 199 37 HOH HOH . D 4 HOH A 47 200 38 HOH HOH . D 4 HOH A 48 201 39 HOH HOH . D 4 HOH A 49 202 42 HOH HOH . D 4 HOH A 50 203 43 HOH HOH . D 4 HOH A 51 204 44 HOH HOH . D 4 HOH A 52 205 46 HOH HOH . D 4 HOH A 53 206 47 HOH HOH . D 4 HOH A 54 207 49 HOH HOH . D 4 HOH A 55 208 51 HOH HOH . D 4 HOH A 56 209 52 HOH HOH . D 4 HOH A 57 210 53 HOH HOH . D 4 HOH A 58 211 54 HOH HOH . D 4 HOH A 59 212 55 HOH HOH . D 4 HOH A 60 213 56 HOH HOH . D 4 HOH A 61 214 58 HOH HOH . D 4 HOH A 62 215 60 HOH HOH . D 4 HOH A 63 216 61 HOH HOH . D 4 HOH A 64 217 62 HOH HOH . D 4 HOH A 65 218 64 HOH HOH . D 4 HOH A 66 219 65 HOH HOH . D 4 HOH A 67 220 66 HOH HOH . D 4 HOH A 68 221 67 HOH HOH . D 4 HOH A 69 222 68 HOH HOH . D 4 HOH A 70 223 69 HOH HOH . D 4 HOH A 71 224 70 HOH HOH . D 4 HOH A 72 225 72 HOH HOH . D 4 HOH A 73 226 73 HOH HOH . D 4 HOH A 74 227 74 HOH HOH . D 4 HOH A 75 228 75 HOH HOH . D 4 HOH A 76 229 76 HOH HOH . D 4 HOH A 77 230 77 HOH HOH . D 4 HOH A 78 231 78 HOH HOH . D 4 HOH A 79 232 79 HOH HOH . D 4 HOH A 80 233 80 HOH HOH . D 4 HOH A 81 234 81 HOH HOH . D 4 HOH A 82 235 82 HOH HOH . D 4 HOH A 83 236 85 HOH HOH . D 4 HOH A 84 237 86 HOH HOH . D 4 HOH A 85 238 87 HOH HOH . D 4 HOH A 86 239 88 HOH HOH . D 4 HOH A 87 240 89 HOH HOH . D 4 HOH A 88 241 91 HOH HOH . D 4 HOH A 89 242 93 HOH HOH . D 4 HOH A 90 243 95 HOH HOH . D 4 HOH A 91 244 96 HOH HOH . D 4 HOH A 92 245 98 HOH HOH . D 4 HOH A 93 246 99 HOH HOH . D 4 HOH A 94 247 101 HOH HOH . D 4 HOH A 95 248 102 HOH HOH . D 4 HOH A 96 249 103 HOH HOH . D 4 HOH A 97 250 104 HOH HOH . D 4 HOH A 98 251 105 HOH HOH . D 4 HOH A 99 252 107 HOH HOH . D 4 HOH A 100 253 109 HOH HOH . D 4 HOH A 101 254 110 HOH HOH . D 4 HOH A 102 255 112 HOH HOH . D 4 HOH A 103 256 114 HOH HOH . D 4 HOH A 104 257 117 HOH HOH . D 4 HOH A 105 258 118 HOH HOH . D 4 HOH A 106 259 119 HOH HOH . D 4 HOH A 107 260 120 HOH HOH . D 4 HOH A 108 261 122 HOH HOH . D 4 HOH A 109 262 124 HOH HOH . D 4 HOH A 110 263 125 HOH HOH . D 4 HOH A 111 264 126 HOH HOH . D 4 HOH A 112 265 132 HOH HOH . D 4 HOH A 113 266 134 HOH HOH . D 4 HOH A 114 267 135 HOH HOH . D 4 HOH A 115 268 136 HOH HOH . D 4 HOH A 116 269 140 HOH HOH . D 4 HOH A 117 270 141 HOH HOH . D 4 HOH A 118 271 142 HOH HOH . D 4 HOH A 119 272 143 HOH HOH . D 4 HOH A 120 273 144 HOH HOH . D 4 HOH A 121 274 145 HOH HOH . D 4 HOH A 122 275 146 HOH HOH . D 4 HOH A 123 276 147 HOH HOH . D 4 HOH A 124 277 148 HOH HOH . D 4 HOH A 125 278 151 HOH HOH . D 4 HOH A 126 279 152 HOH HOH . D 4 HOH A 127 280 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . B . C 3 -19.891 -24.869 -13.968 0.3 18.99 ? C11 BTN 300 A 1 HETATM 2 O O11 BTN . B . C 3 -19.886 -25.847 -14.737 0.3 17.49 ? O11 BTN 300 A 1 HETATM 3 O O12 BTN . B . C 3 -20.994 -24.392 -13.606 0.3 18.08 ? O12 BTN 300 A 1 HETATM 4 C C10 BTN . B . C 3 -18.584 -24.289 -13.482 0.3 17.54 ? C10 BTN 300 A 1 HETATM 5 C C9 BTN . B . C 3 -17.685 -25.394 -12.933 0.3 18.08 ? C9 BTN 300 A 1 HETATM 6 C C8 BTN . B . C 3 -18.306 -26.043 -11.701 0.3 16.7 ? C8 BTN 300 A 1 HETATM 7 C C7 BTN . B . C 3 -17.333 -26.953 -10.953 0.3 17.68 ? C7 BTN 300 A 1 HETATM 8 C C2 BTN . B . C 3 -18.055 -27.64 -9.794 0.3 16.93 ? C2 BTN 300 A 1 HETATM 9 S S1 BTN . B . C 3 -17.988 -26.738 -8.388 0.3 17.16 ? S1 BTN 300 A 1 HETATM 10 C C6 BTN . B . C 3 -18.54 -28.209 -7.489 0.3 17.25 ? C6 BTN 300 A 1 HETATM 11 C C5 BTN . B . C 3 -17.847 -29.417 -8.079 0.3 17.11 ? C5 BTN 300 A 1 HETATM 12 N N1 BTN . B . C 3 -16.556 -29.613 -7.451 0.3 17 ? N1 BTN 300 A 1 HETATM 13 C C3 BTN . B . C 3 -15.574 -29.334 -8.3 0.3 17.54 ? C3 BTN 300 A 1 HETATM 14 O O3 BTN . B . C 3 -14.213 -29.335 -7.974 0.3 16.73 ? O3 BTN 300 A 1 HETATM 15 N N2 BTN . B . C 3 -16.052 -29.039 -9.503 0.3 16.99 ? N2 BTN 300 A 1 HETATM 16 C C4 BTN . B . C 3 -17.498 -29.029 -9.505 0.3 17.41 ? C4 BTN 300 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #