data_3RDM # _model_server_result.job_id BzVzcxVN9mi5gcYtxJTDfg _model_server_result.datetime_utc '2024-11-18 08:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3RDM # _exptl.entry_id 3RDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDM _cell.length_a 57.436 _cell.length_b 57.436 _cell.length_c 173.958 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -57.436 -57.436 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -57.436 -57.436 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3RDM _atom_sites.fract_transf_matrix[1][1] 0.017411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 700 700 1PE P2K . C 3 BTN A 1 300 300 BTN BTN . D 4 HOH A 1 154 154 HOH HOH . D 4 HOH A 2 155 155 HOH HOH . D 4 HOH A 3 156 156 HOH HOH . D 4 HOH A 4 157 157 HOH HOH . D 4 HOH A 5 158 158 HOH HOH . D 4 HOH A 6 159 159 HOH HOH . D 4 HOH A 7 160 160 HOH HOH . D 4 HOH A 8 161 161 HOH HOH . D 4 HOH A 9 162 162 HOH HOH . D 4 HOH A 10 163 163 HOH HOH . D 4 HOH A 11 164 164 HOH HOH . D 4 HOH A 12 165 165 HOH HOH . D 4 HOH A 13 166 1 HOH HOH . D 4 HOH A 14 167 2 HOH HOH . D 4 HOH A 15 168 3 HOH HOH . D 4 HOH A 16 169 4 HOH HOH . D 4 HOH A 17 170 5 HOH HOH . D 4 HOH A 18 171 6 HOH HOH . D 4 HOH A 19 172 7 HOH HOH . D 4 HOH A 20 173 8 HOH HOH . D 4 HOH A 21 174 9 HOH HOH . D 4 HOH A 22 175 10 HOH HOH . D 4 HOH A 23 176 11 HOH HOH . D 4 HOH A 24 177 12 HOH HOH . D 4 HOH A 25 178 13 HOH HOH . D 4 HOH A 26 179 14 HOH HOH . D 4 HOH A 27 180 15 HOH HOH . D 4 HOH A 28 181 16 HOH HOH . D 4 HOH A 29 182 17 HOH HOH . D 4 HOH A 30 183 18 HOH HOH . D 4 HOH A 31 184 20 HOH HOH . D 4 HOH A 32 185 21 HOH HOH . D 4 HOH A 33 186 22 HOH HOH . D 4 HOH A 34 187 23 HOH HOH . D 4 HOH A 35 188 24 HOH HOH . D 4 HOH A 36 189 26 HOH HOH . D 4 HOH A 37 190 27 HOH HOH . D 4 HOH A 38 191 28 HOH HOH . D 4 HOH A 39 192 29 HOH HOH . D 4 HOH A 40 193 30 HOH HOH . D 4 HOH A 41 194 31 HOH HOH . D 4 HOH A 42 195 33 HOH HOH . D 4 HOH A 43 196 34 HOH HOH . D 4 HOH A 44 197 35 HOH HOH . D 4 HOH A 45 198 36 HOH HOH . D 4 HOH A 46 199 37 HOH HOH . D 4 HOH A 47 200 38 HOH HOH . D 4 HOH A 48 201 39 HOH HOH . D 4 HOH A 49 202 42 HOH HOH . D 4 HOH A 50 203 43 HOH HOH . D 4 HOH A 51 204 44 HOH HOH . D 4 HOH A 52 205 46 HOH HOH . D 4 HOH A 53 206 47 HOH HOH . D 4 HOH A 54 207 49 HOH HOH . D 4 HOH A 55 208 51 HOH HOH . D 4 HOH A 56 209 52 HOH HOH . D 4 HOH A 57 210 53 HOH HOH . D 4 HOH A 58 211 54 HOH HOH . D 4 HOH A 59 212 55 HOH HOH . D 4 HOH A 60 213 56 HOH HOH . D 4 HOH A 61 214 58 HOH HOH . D 4 HOH A 62 215 60 HOH HOH . D 4 HOH A 63 216 61 HOH HOH . D 4 HOH A 64 217 62 HOH HOH . D 4 HOH A 65 218 64 HOH HOH . D 4 HOH A 66 219 65 HOH HOH . D 4 HOH A 67 220 66 HOH HOH . D 4 HOH A 68 221 67 HOH HOH . D 4 HOH A 69 222 68 HOH HOH . D 4 HOH A 70 223 69 HOH HOH . D 4 HOH A 71 224 70 HOH HOH . D 4 HOH A 72 225 72 HOH HOH . D 4 HOH A 73 226 73 HOH HOH . D 4 HOH A 74 227 74 HOH HOH . D 4 HOH A 75 228 75 HOH HOH . D 4 HOH A 76 229 76 HOH HOH . D 4 HOH A 77 230 77 HOH HOH . D 4 HOH A 78 231 78 HOH HOH . D 4 HOH A 79 232 79 HOH HOH . D 4 HOH A 80 233 80 HOH HOH . D 4 HOH A 81 234 81 HOH HOH . D 4 HOH A 82 235 82 HOH HOH . D 4 HOH A 83 236 85 HOH HOH . D 4 HOH A 84 237 86 HOH HOH . D 4 HOH A 85 238 87 HOH HOH . D 4 HOH A 86 239 88 HOH HOH . D 4 HOH A 87 240 89 HOH HOH . D 4 HOH A 88 241 91 HOH HOH . D 4 HOH A 89 242 93 HOH HOH . D 4 HOH A 90 243 95 HOH HOH . D 4 HOH A 91 244 96 HOH HOH . D 4 HOH A 92 245 98 HOH HOH . D 4 HOH A 93 246 99 HOH HOH . D 4 HOH A 94 247 101 HOH HOH . D 4 HOH A 95 248 102 HOH HOH . D 4 HOH A 96 249 103 HOH HOH . D 4 HOH A 97 250 104 HOH HOH . D 4 HOH A 98 251 105 HOH HOH . D 4 HOH A 99 252 107 HOH HOH . D 4 HOH A 100 253 109 HOH HOH . D 4 HOH A 101 254 110 HOH HOH . D 4 HOH A 102 255 112 HOH HOH . D 4 HOH A 103 256 114 HOH HOH . D 4 HOH A 104 257 117 HOH HOH . D 4 HOH A 105 258 118 HOH HOH . D 4 HOH A 106 259 119 HOH HOH . D 4 HOH A 107 260 120 HOH HOH . D 4 HOH A 108 261 122 HOH HOH . D 4 HOH A 109 262 124 HOH HOH . D 4 HOH A 110 263 125 HOH HOH . D 4 HOH A 111 264 126 HOH HOH . D 4 HOH A 112 265 132 HOH HOH . D 4 HOH A 113 266 134 HOH HOH . D 4 HOH A 114 267 135 HOH HOH . D 4 HOH A 115 268 136 HOH HOH . D 4 HOH A 116 269 140 HOH HOH . D 4 HOH A 117 270 141 HOH HOH . D 4 HOH A 118 271 142 HOH HOH . D 4 HOH A 119 272 143 HOH HOH . D 4 HOH A 120 273 144 HOH HOH . D 4 HOH A 121 274 145 HOH HOH . D 4 HOH A 122 275 146 HOH HOH . D 4 HOH A 123 276 147 HOH HOH . D 4 HOH A 124 277 148 HOH HOH . D 4 HOH A 125 278 151 HOH HOH . D 4 HOH A 126 279 152 HOH HOH . D 4 HOH A 127 280 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . A . B 2 -14.82 -29.287 -7.62 0.5 34.69 ? OH2 1PE 700 A 1 HETATM 2 C C12 1PE . A . B 2 -15.917 -29.638 -8.47 0.5 37.18 ? C12 1PE 700 A 1 HETATM 3 C C22 1PE . A . B 2 -17.225 -29.589 -7.684 0.5 34.89 ? C22 1PE 700 A 1 HETATM 4 O OH3 1PE . A . B 2 -17.978 -28.465 -8.126 0.5 36.13 ? OH3 1PE 700 A 1 HETATM 5 C C13 1PE . A . B 2 -18.273 -27.323 -10.217 0.5 36.18 ? C13 1PE 700 A 1 HETATM 6 C C23 1PE . A . B 2 -17.277 -27.762 -9.15 0.5 35.23 ? C23 1PE 700 A 1 HETATM 7 O OH4 1PE . A . B 2 -17.574 -26.885 -11.386 0.5 36.18 ? OH4 1PE 700 A 1 HETATM 8 C C14 1PE . A . B 2 -17.792 -25.656 -13.463 0.5 36.92 ? C14 1PE 700 A 1 HETATM 9 C C24 1PE . A . B 2 -18.29 -25.835 -12.035 0.5 36.26 ? C24 1PE 700 A 1 HETATM 10 O OH5 1PE . A . B 2 -18.859 -25.15 -14.268 0.5 37.15 ? OH5 1PE 700 A 1 HETATM 11 C C15 1PE . A . B 2 -21.24 -24.721 -14.14 0.5 36.84 ? C15 1PE 700 A 1 HETATM 12 C C25 1PE . A . B 2 -19.884 -24.578 -13.454 0.5 36.67 ? C25 1PE 700 A 1 HETATM 13 O OH6 1PE . A . B 2 -22.017 -25.702 -13.455 0.5 36.51 ? OH6 1PE 700 A 1 HETATM 14 C C16 1PE . A . B 2 -23.285 -27.026 -15.013 0.5 37.21 ? C16 1PE 700 A 1 HETATM 15 C C26 1PE . A . B 2 -23.318 -25.872 -14.016 0.5 36.66 ? C26 1PE 700 A 1 HETATM 16 O OH7 1PE . A . B 2 -24.607 -27.3 -15.49 0.5 37.6 ? OH7 1PE 700 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #