data_3RDO
#
_model_server_result.job_id            6EnBQssZcelTkQ4v7CJB9g 
_model_server_result.datetime_utc      '2024-11-18 08:38:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    3RDO 
#
_exptl.entry_id    3RDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RDO 
_cell.length_a            57.36 
_cell.length_b            57.36 
_cell.length_c            184.067 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O12 BTN . A BTN 300 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc2 B O11 BTN . A BTN 300 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc3 C NI NI . A NI 301 1_555 D O2 SO4 . A SO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RDO 
_atom_sites.fract_transf_matrix[1][1]    0.017434 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005433 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BTN A 1 300 300 BTN BTN . 
C 3 NI A 1 301 301 NI NI . 
D 4 SO4 A 1 302 302 SO4 SO4 . 
E 5 GOL A 1 303 303 GOL GOL . 
F 5 GOL A 1 304 304 GOL GOL . 
G 6 HOH A 1 141 141 HOH HOH . 
G 6 HOH A 2 142 142 HOH HOH . 
G 6 HOH A 3 143 143 HOH HOH . 
G 6 HOH A 4 144 144 HOH HOH . 
G 6 HOH A 5 145 145 HOH HOH . 
G 6 HOH A 6 146 146 HOH HOH . 
G 6 HOH A 7 147 147 HOH HOH . 
G 6 HOH A 8 148 148 HOH HOH . 
G 6 HOH A 9 149 149 HOH HOH . 
G 6 HOH A 10 150 150 HOH HOH . 
G 6 HOH A 11 151 151 HOH HOH . 
G 6 HOH A 12 152 152 HOH HOH . 
G 6 HOH A 13 153 1 HOH HOH . 
G 6 HOH A 14 154 2 HOH HOH . 
G 6 HOH A 15 155 155 HOH HOH . 
G 6 HOH A 16 156 156 HOH HOH . 
G 6 HOH A 17 157 157 HOH HOH . 
G 6 HOH A 18 158 3 HOH HOH . 
G 6 HOH A 19 159 159 HOH HOH . 
G 6 HOH A 20 160 160 HOH HOH . 
G 6 HOH A 21 161 161 HOH HOH . 
G 6 HOH A 22 162 4 HOH HOH . 
G 6 HOH A 23 163 5 HOH HOH . 
G 6 HOH A 24 164 164 HOH HOH . 
G 6 HOH A 25 165 165 HOH HOH . 
G 6 HOH A 26 166 166 HOH HOH . 
G 6 HOH A 27 167 167 HOH HOH . 
G 6 HOH A 28 168 6 HOH HOH . 
G 6 HOH A 29 169 7 HOH HOH . 
G 6 HOH A 30 170 170 HOH HOH . 
G 6 HOH A 31 171 171 HOH HOH . 
G 6 HOH A 32 172 172 HOH HOH . 
G 6 HOH A 33 173 8 HOH HOH . 
G 6 HOH A 34 174 174 HOH HOH . 
G 6 HOH A 35 175 9 HOH HOH . 
G 6 HOH A 36 176 176 HOH HOH . 
G 6 HOH A 37 177 177 HOH HOH . 
G 6 HOH A 38 178 10 HOH HOH . 
G 6 HOH A 39 179 179 HOH HOH . 
G 6 HOH A 40 180 180 HOH HOH . 
G 6 HOH A 41 181 11 HOH HOH . 
G 6 HOH A 42 182 12 HOH HOH . 
G 6 HOH A 43 183 183 HOH HOH . 
G 6 HOH A 44 184 184 HOH HOH . 
G 6 HOH A 45 185 185 HOH HOH . 
G 6 HOH A 46 186 186 HOH HOH . 
G 6 HOH A 47 187 13 HOH HOH . 
G 6 HOH A 48 188 188 HOH HOH . 
G 6 HOH A 49 189 15 HOH HOH . 
G 6 HOH A 50 190 190 HOH HOH . 
G 6 HOH A 51 191 191 HOH HOH . 
G 6 HOH A 52 192 16 HOH HOH . 
G 6 HOH A 53 193 193 HOH HOH . 
G 6 HOH A 54 194 194 HOH HOH . 
G 6 HOH A 55 195 195 HOH HOH . 
G 6 HOH A 56 196 196 HOH HOH . 
G 6 HOH A 57 197 18 HOH HOH . 
G 6 HOH A 58 198 198 HOH HOH . 
G 6 HOH A 59 199 20 HOH HOH . 
G 6 HOH A 60 200 200 HOH HOH . 
G 6 HOH A 61 201 201 HOH HOH . 
G 6 HOH A 62 202 202 HOH HOH . 
G 6 HOH A 63 203 21 HOH HOH . 
G 6 HOH A 64 204 204 HOH HOH . 
G 6 HOH A 65 205 205 HOH HOH . 
G 6 HOH A 66 206 206 HOH HOH . 
G 6 HOH A 67 207 207 HOH HOH . 
G 6 HOH A 68 208 208 HOH HOH . 
G 6 HOH A 69 209 22 HOH HOH . 
G 6 HOH A 70 210 210 HOH HOH . 
G 6 HOH A 71 211 211 HOH HOH . 
G 6 HOH A 72 212 212 HOH HOH . 
G 6 HOH A 73 213 213 HOH HOH . 
G 6 HOH A 74 214 214 HOH HOH . 
G 6 HOH A 75 215 23 HOH HOH . 
G 6 HOH A 76 216 216 HOH HOH . 
G 6 HOH A 77 217 217 HOH HOH . 
G 6 HOH A 78 218 218 HOH HOH . 
G 6 HOH A 79 219 219 HOH HOH . 
G 6 HOH A 80 220 220 HOH HOH . 
G 6 HOH A 81 221 221 HOH HOH . 
G 6 HOH A 82 222 222 HOH HOH . 
G 6 HOH A 83 223 223 HOH HOH . 
G 6 HOH A 84 224 224 HOH HOH . 
G 6 HOH A 85 225 225 HOH HOH . 
G 6 HOH A 86 226 226 HOH HOH . 
G 6 HOH A 87 227 227 HOH HOH . 
G 6 HOH A 88 228 228 HOH HOH . 
G 6 HOH A 89 229 229 HOH HOH . 
G 6 HOH A 90 230 230 HOH HOH . 
G 6 HOH A 91 231 231 HOH HOH . 
G 6 HOH A 92 232 232 HOH HOH . 
G 6 HOH A 93 233 233 HOH HOH . 
G 6 HOH A 94 234 234 HOH HOH . 
G 6 HOH A 95 235 24 HOH HOH . 
G 6 HOH A 96 236 25 HOH HOH . 
G 6 HOH A 97 237 26 HOH HOH . 
G 6 HOH A 98 238 27 HOH HOH . 
G 6 HOH A 99 239 29 HOH HOH . 
G 6 HOH A 100 240 30 HOH HOH . 
G 6 HOH A 101 241 31 HOH HOH . 
G 6 HOH A 102 242 32 HOH HOH . 
G 6 HOH A 103 243 33 HOH HOH . 
G 6 HOH A 104 244 34 HOH HOH . 
G 6 HOH A 105 245 35 HOH HOH . 
G 6 HOH A 106 246 36 HOH HOH . 
G 6 HOH A 107 247 37 HOH HOH . 
G 6 HOH A 108 248 38 HOH HOH . 
G 6 HOH A 109 249 39 HOH HOH . 
G 6 HOH A 110 250 40 HOH HOH . 
G 6 HOH A 111 251 41 HOH HOH . 
G 6 HOH A 112 252 42 HOH HOH . 
G 6 HOH A 113 253 43 HOH HOH . 
G 6 HOH A 114 254 44 HOH HOH . 
G 6 HOH A 115 255 45 HOH HOH . 
G 6 HOH A 116 256 46 HOH HOH . 
G 6 HOH A 117 257 47 HOH HOH . 
G 6 HOH A 118 258 48 HOH HOH . 
G 6 HOH A 119 259 49 HOH HOH . 
G 6 HOH A 120 260 50 HOH HOH . 
G 6 HOH A 121 261 51 HOH HOH . 
G 6 HOH A 122 262 52 HOH HOH . 
G 6 HOH A 123 263 53 HOH HOH . 
G 6 HOH A 124 264 54 HOH HOH . 
G 6 HOH A 125 265 55 HOH HOH . 
G 6 HOH A 126 266 56 HOH HOH . 
G 6 HOH A 127 267 57 HOH HOH . 
G 6 HOH A 128 268 58 HOH HOH . 
G 6 HOH A 129 269 60 HOH HOH . 
G 6 HOH A 130 270 61 HOH HOH . 
G 6 HOH A 131 271 62 HOH HOH . 
G 6 HOH A 132 272 63 HOH HOH . 
G 6 HOH A 133 273 64 HOH HOH . 
G 6 HOH A 134 274 65 HOH HOH . 
G 6 HOH A 135 275 66 HOH HOH . 
G 6 HOH A 136 276 67 HOH HOH . 
G 6 HOH A 137 277 68 HOH HOH . 
G 6 HOH A 138 278 69 HOH HOH . 
G 6 HOH A 139 279 70 HOH HOH . 
G 6 HOH A 140 280 71 HOH HOH . 
G 6 HOH A 141 281 73 HOH HOH . 
G 6 HOH A 142 282 74 HOH HOH . 
G 6 HOH A 143 283 75 HOH HOH . 
G 6 HOH A 144 284 76 HOH HOH . 
G 6 HOH A 145 285 77 HOH HOH . 
G 6 HOH A 146 286 78 HOH HOH . 
G 6 HOH A 147 287 79 HOH HOH . 
G 6 HOH A 148 288 80 HOH HOH . 
G 6 HOH A 149 289 81 HOH HOH . 
G 6 HOH A 150 290 82 HOH HOH . 
G 6 HOH A 151 291 83 HOH HOH . 
G 6 HOH A 152 292 84 HOH HOH . 
G 6 HOH A 153 293 85 HOH HOH . 
G 6 HOH A 154 294 86 HOH HOH . 
G 6 HOH A 155 295 87 HOH HOH . 
G 6 HOH A 156 296 88 HOH HOH . 
G 6 HOH A 157 297 89 HOH HOH . 
G 6 HOH A 158 298 90 HOH HOH . 
G 6 HOH A 159 299 91 HOH HOH . 
G 6 HOH A 160 305 92 HOH HOH . 
G 6 HOH A 161 306 95 HOH HOH . 
G 6 HOH A 162 307 96 HOH HOH . 
G 6 HOH A 163 308 97 HOH HOH . 
G 6 HOH A 164 309 98 HOH HOH . 
G 6 HOH A 165 310 100 HOH HOH . 
G 6 HOH A 166 311 101 HOH HOH . 
G 6 HOH A 167 312 102 HOH HOH . 
G 6 HOH A 168 313 103 HOH HOH . 
G 6 HOH A 169 314 104 HOH HOH . 
G 6 HOH A 170 315 105 HOH HOH . 
G 6 HOH A 171 316 106 HOH HOH . 
G 6 HOH A 172 317 107 HOH HOH . 
G 6 HOH A 173 318 108 HOH HOH . 
G 6 HOH A 174 319 109 HOH HOH . 
G 6 HOH A 175 320 110 HOH HOH . 
G 6 HOH A 176 321 111 HOH HOH . 
G 6 HOH A 177 322 114 HOH HOH . 
G 6 HOH A 178 323 115 HOH HOH . 
G 6 HOH A 179 324 116 HOH HOH . 
G 6 HOH A 180 325 117 HOH HOH . 
G 6 HOH A 181 326 118 HOH HOH . 
G 6 HOH A 182 327 120 HOH HOH . 
G 6 HOH A 183 328 121 HOH HOH . 
G 6 HOH A 184 329 122 HOH HOH . 
G 6 HOH A 185 330 125 HOH HOH . 
G 6 HOH A 186 331 126 HOH HOH . 
G 6 HOH A 187 332 127 HOH HOH . 
G 6 HOH A 188 333 128 HOH HOH . 
G 6 HOH A 189 334 129 HOH HOH . 
G 6 HOH A 190 335 130 HOH HOH . 
G 6 HOH A 191 336 133 HOH HOH . 
G 6 HOH A 192 337 134 HOH HOH . 
G 6 HOH A 193 338 135 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -25.828 
_atom_site.Cartn_y               -21.363 
_atom_site.Cartn_z               16.004 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.32 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#