data_3RDR # _model_server_result.job_id AoiH6fwGJe-gKFJcfyYN9g _model_server_result.datetime_utc '2024-11-23 21:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RDR # _exptl.entry_id 3RDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RDR _cell.length_a 96.7 _cell.length_b 96.7 _cell.length_c 114.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -48.35 -83.744657 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.35 -83.744657 0 4 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -48.35 -83.744657 57.15 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 57.15 6 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 48.35 -83.744657 57.15 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 32 A HIS 32 1_555 B ZN ZN . A ZN 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A ND1 HIS 133 A HIS 133 1_555 B ZN ZN . A ZN 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A SG CYS 141 A CYS 141 1_555 B ZN ZN . A ZN 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RDR _atom_sites.fract_transf_matrix[1][1] 0.010341 _atom_sites.fract_transf_matrix[1][2] 0.005971 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 190 190 ZN ZN . C 3 CL A 1 158 1 CL CL . D 4 HOH A 1 159 1 HOH HOH . D 4 HOH A 2 160 2 HOH HOH . D 4 HOH A 3 161 3 HOH HOH . D 4 HOH A 4 162 4 HOH HOH . D 4 HOH A 5 163 5 HOH HOH . D 4 HOH A 6 164 6 HOH HOH . D 4 HOH A 7 165 7 HOH HOH . D 4 HOH A 8 166 8 HOH HOH . D 4 HOH A 9 167 9 HOH HOH . D 4 HOH A 10 168 10 HOH HOH . D 4 HOH A 11 169 11 HOH HOH . D 4 HOH A 12 170 12 HOH HOH . D 4 HOH A 13 171 13 HOH HOH . D 4 HOH A 14 172 14 HOH HOH . D 4 HOH A 15 173 15 HOH HOH . D 4 HOH A 16 174 16 HOH HOH . D 4 HOH A 17 175 17 HOH HOH . D 4 HOH A 18 176 18 HOH HOH . D 4 HOH A 19 177 19 HOH HOH . D 4 HOH A 20 178 20 HOH HOH . D 4 HOH A 21 179 21 HOH HOH . D 4 HOH A 22 180 22 HOH HOH . D 4 HOH A 23 181 23 HOH HOH . D 4 HOH A 24 182 24 HOH HOH . D 4 HOH A 25 183 25 HOH HOH . D 4 HOH A 26 184 26 HOH HOH . D 4 HOH A 27 185 27 HOH HOH . D 4 HOH A 28 186 28 HOH HOH . D 4 HOH A 29 187 29 HOH HOH . D 4 HOH A 30 188 30 HOH HOH . D 4 HOH A 31 189 31 HOH HOH . D 4 HOH A 32 191 32 HOH HOH . D 4 HOH A 33 192 33 HOH HOH . D 4 HOH A 34 193 34 HOH HOH . D 4 HOH A 35 194 35 HOH HOH . D 4 HOH A 36 195 36 HOH HOH . D 4 HOH A 37 196 37 HOH HOH . D 4 HOH A 38 197 38 HOH HOH . D 4 HOH A 39 198 39 HOH HOH . D 4 HOH A 40 199 40 HOH HOH . D 4 HOH A 41 200 41 HOH HOH . D 4 HOH A 42 201 42 HOH HOH . D 4 HOH A 43 202 43 HOH HOH . D 4 HOH A 44 203 44 HOH HOH . D 4 HOH A 45 204 45 HOH HOH . D 4 HOH A 46 205 46 HOH HOH . D 4 HOH A 47 206 47 HOH HOH . D 4 HOH A 48 207 48 HOH HOH . D 4 HOH A 49 208 49 HOH HOH . D 4 HOH A 50 209 50 HOH HOH . D 4 HOH A 51 210 51 HOH HOH . D 4 HOH A 52 211 52 HOH HOH . D 4 HOH A 53 212 53 HOH HOH . D 4 HOH A 54 213 54 HOH HOH . D 4 HOH A 55 214 55 HOH HOH . D 4 HOH A 56 215 56 HOH HOH . D 4 HOH A 57 216 57 HOH HOH . D 4 HOH A 58 217 58 HOH HOH . D 4 HOH A 59 218 59 HOH HOH . D 4 HOH A 60 219 60 HOH HOH . D 4 HOH A 61 220 61 HOH HOH . D 4 HOH A 62 221 62 HOH HOH . D 4 HOH A 63 222 63 HOH HOH . D 4 HOH A 64 223 64 HOH HOH . D 4 HOH A 65 224 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.182 _atom_site.Cartn_y -45.013 _atom_site.Cartn_z 17.081 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 190 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #